Corynebacterium diphtheriae HC01: CDHC01_0384
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Entry
CDHC01_0384 CDS
T01693
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cdt
Corynebacterium diphtheriae HC01
Pathway
cdt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDHC01_0384 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdt03021
]
CDHC01_0384 (rpoB)
03400 DNA repair and recombination proteins [BR:
cdt03400
]
CDHC01_0384 (rpoB)
Enzymes [BR:
cdt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDHC01_0384 (rpoB)
Transcription machinery [BR:
cdt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDHC01_0384 (rpoB)
DNA repair and recombination proteins [BR:
cdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDHC01_0384 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEX73637
LinkDB
All DBs
Position
366615..370145
Genome browser
AA seq
1176 aa
AA seq
DB search
MVVNIAGPPPREVLEGPILAVSRQTKANIPGAPERKSFAKITEPIEVPGLLDIQLNSFAW
LIGTPEWRARQQEELGDSVRVTSGLEDILEELSPIQDYSGNMSLSLSEPRFEDMKNTIDE
CKDKDINYSAPLYVTAEFINNETQEIKSQTVFIGDFPMMTDKGTFIVNGTERVVVSQLVR
SPGVYFDQTIDKSTERPLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL
GWTTEQITERFGFSEIMMSTLESDGVSNTDEALLEIYRKQRPGEQPTRDLAQSLLDNSFF
RAKRYDLAKVGRYKVNRKLGLGGDNEGLMTLTEEDIATTLEYLVRLHAGETTMTSPTGEV
IPVETDDIDHFGNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINVRP
VSAAIREFFGTSQLSQFMDQNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHASHYGR
MCPIETPEGPNIGLIGSLASYARVNAFGFIETPYRKVENGVLTDQIDYLTADEEDRFVVA
QANVEHDADGKITAESVTVRVKNGDIQVVAPESVDYLDVSPRQMVSVATAMIPFLEHDDA
NRALMGANMQRQAVPLVRSEAPFVGTGMERAAAYDAGDLIINKKGGVVENVSADIITVMA
DDGTRETYILRKFERTNQGSCYNQTPLVNIGDRVEAGQVLADGPGTHNGEMSLGRNLLVA
FMPWEGHNYEDAIILNQRVVEEDILTSIHIEEHEIDARDTKLGPEEITREIPNVSEDVLK
DLDERGIVRIGADVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHG
ETGKVIGVRRFSRDDDDDLAPGVNEMIRVYVAQKRKIQDGDKLAGRHGNKGVVGKILPQE
DMPFMPDGTPVDIILNTHGVPRRMNIGQVLEVHLGWLAAAGWKIDTEDPANAELLKTLPE
DLYDVPAGSLTATPVFDGATNEEIAGLLGNSRPNRDGDVMVDENGKATLFDGRSGEPFPY
PVSVGYMYILKLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGA
AYTLQELLTIKSDDVVGRVKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLSAD
GTPMELSGSDDDEFDQAGASLGINLSRDERSDADIA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcaatattgcggggccaccgccgcgtgaggtgctagaaggacccatcttggca
gtctcccgccagaccaaggccaacatccctggggcccccgaacgcaagtcgttcgcaaag
attacggaaccaatcgaggttccggggcttctcgatattcagctcaactcctttgcatgg
ttgattggtacgcctgagtggcgcgcccgccagcaagaagagctgggcgactcggttcgc
gtaacaagcggacttgaagacatcttggaggagctatctcctatccaggattattccgga
aatatgtcgctgtctctttctgagcctcgcttcgaggacatgaaaaacactattgatgag
tgcaaagacaaagacatcaactactccgcgccactgtatgtgaccgcagagttcattaac
aacgaaacccaagagatcaaatcgcagaccgtattcatcggcgacttcccgatgatgacg
gacaagggcacgttcattgtgaacggtaccgagcgtgtcgttgtctctcagctggttcgt
tctcctggcgtgtactttgatcagacgatcgataagtccaccgagcgtccactgcactcc
gtgaaggtcattccttcccgcggtgcatggctcgagttcgacgtggataagcgtgacacc
gttggtgtgcgtatcgaccgcaagcgtcgtcagcctgtgaccgtcttgctcaaggccctt
ggttggaccactgagcagatcacggagcgcttcggcttctctgagatcatgatgtccacc
ctcgagtccgacggtgtatctaacaccgacgaggctttgctggaaatctaccgcaagcag
cgtccaggtgagcagcctacccgcgacttggcacagtccctgctggacaactctttcttc
cgcgcaaagcgctacgacctagcaaaggtgggccgctacaaggtcaaccgcaagctgggc
ttgggtggcgacaacgagggcctcatgaccctcaccgaagaagacatcgcaaccaccttg
gagtacttggtacgcctgcacgcaggtgaaaccaccatgacgtcgccaaccggcgaggtc
atcccagtggaaaccgatgacatcgaccacttcggtaaccgtcgtctgcgtaccgtcggc
gagctgatccaaaaccaggttcgtgtgggtctttcccgcatggagcgcgttgttcgcgag
cgcatgaccactcaggatgctgagtcgatcacccctacctcgctgatcaacgttcgccct
gtttctgccgccatccgcgagttcttcggaacctcgcagctgtcgcagttcatggaccag
aacaactctttgtccggtctgacccacaagcgtcgtctctccgcactgggcccaggcggc
ctgtcgcgtgagcgcgccggcattgaggtccgagacgttcacgcttctcactacggccgt
atgtgcccaattgagactccggaaggtccaaacattggtctgatcggttcgcttgcgtcc
tacgctcgcgtcaacgcctttggcttcattgaaacgccataccgcaaggtagaaaacggc
gttctgactgaccagatcgactacctgaccgctgatgaggaagatcgcttcgtcgtcgcg
caggcaaacgtcgagcatgatgctgacggcaagatcaccgcagagagcgtaaccgtgcgt
gtgaagaacggcgacatccaggtcgtcgcaccggaatccgtcgattacctcgacgtttcg
ccacgtcagatggtttctgtggcaaccgccatgattccattcctcgagcacgacgacgct
aaccgtgccttgatgggtgcgaacatgcagcgtcaggctgtgccactcgtgcgttctgag
gcaccattcgttggcaccggtatggagcgcgcagctgcctacgatgctggtgacttgatc
atcaacaagaagggcggcgtggttgaaaacgtctccgcagacatcatcaccgtgatggct
gacgacggaacccgcgaaacctacatcctgcgtaagttcgagcgcaccaaccagggctcc
tgctacaaccagacgccgctggtaaacatcggcgatcgtgttgaggccggtcaggttctc
gccgacggcccaggtacgcacaacggcgaaatgtccctcggacgcaacctcctcgtggct
ttcatgccatgggaaggccacaactacgaggacgctattatcctgaaccagcgcgtggtc
gaagaggatatcctcacctcgatccacatcgaagagcatgagatcgatgctcgcgacacc
aagctgggacctgaggaaatcacccgcgagatcccgaacgtttccgaagacgtgctcaag
gatctcgacgagcgcggtatcgttcgcatcggtgcggacgttcgcgacggcgacatcctc
gtcggtaaggtcaccccgaagggtgaaaccgagctgacccctgaagagcgtctgcttcgt
gccatcttcggcgagaaggcacgcgaagtccgcgacacctccatgaaagtacctcacggt
gaaaccggtaaggtcatcggcgttcgccgcttctcgcgtgacgacgatgacgatctcgca
ccaggcgtcaacgagatgattcgcgtctacgttgcccaaaagcgcaagatccaagacggc
gacaagctcgctggtcgccacggcaacaagggtgtcgtgggcaagatcctgcctcaggaa
gatatgccattcatgccagacggcaccccagtggacatcatcctgaacacccacggtgtg
cctcgtcgtatgaacatcggccaggtgctcgaggttcacttgggctggttggccgctgcc
ggttggaagatcgacaccgaagaccccgcaaacgctgaattgctcaagaccctcccagag
gatctctacgacgtcccagctggttcactgaccgcaaccccagtgttcgacggtgctacc
aacgaggaaatcgcaggtctgttgggcaattctcgtccaaaccgcgacggcgacgtcatg
gtcgacgaaaacggcaaggctacgctgttcgacggtcgctccggcgaaccattcccatac
ccagtgtctgttggctacatgtacatcctgaagctgcaccacttggttgatgagaagatc
cacgcacgttccaccggtccttactccatgattacccagcagccactgggtggtaaggca
cagttcggtggtcagcgcttcggcgagatggaggtgtgggcaatgcaggcatacggcgct
gcctacaccctgcaggaactcctgaccatcaagtctgacgacgtggttggccgcgtcaag
gtgtacgaggccattgtgaagggcgaaaacattccggatcctggtatcccagagtccttc
aaggtgctcctgaaagagctccagtcgctgtgcttgaacgtggaagttctctccgcagac
ggcaccccgatggagttgtctggatcggatgacgacgagttcgatcaggccggtgcctcc
ttgggcatcaacctgtcgcgcgacgagcgttccgacgcagacatcgcctaa
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