Corynebacterium diphtheriae VA01: CDVA01_0337
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Entry
CDVA01_0337 CDS
T01702
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cdv
Corynebacterium diphtheriae VA01
Pathway
cdv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDVA01_0337 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdv03021
]
CDVA01_0337 (rpoB)
03400 DNA repair and recombination proteins [BR:
cdv03400
]
CDVA01_0337 (rpoB)
Enzymes [BR:
cdv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDVA01_0337 (rpoB)
Transcription machinery [BR:
cdv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDVA01_0337 (rpoB)
DNA repair and recombination proteins [BR:
cdv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDVA01_0337 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AEX82606
LinkDB
All DBs
Position
352286..355816
Genome browser
AA seq
1176 aa
AA seq
DB search
MVVNIAGPPPREVLEGPILAVSRQTKANIPGAPERKSFAKITEPIEVPGLLDIQLNSFAW
LIGTPEWRARQQEELGDSVRVTSGLEDILEELSPIQDYSGNMSLSLSEPRFEDMKNTIDE
CKDKDINYSAPLYVTAEFINNETQEIKSQTVFIGDFPMMTDKGTFIVNGTERVVVSQLVR
SPGVYFDQTIDKSTERPLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL
GWTTEQITERFGFSEIMMSTLESDGVSNTDEALLEIYRKQRPGEQPTRDLAQSLLDNSFF
RAKRYDLAKVGRYKVNRKLGLGGDNEGLMTLTEEDIATTLEYLVRLHAGETTMTSPTGEV
IPVETDDIDHFGNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINVRP
VSAAIREFFGTSQLSQFMDQNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHASHYGR
MCPIETPEGPNIGLIGSLASYARVNAFGFIETPYRKVENGVLTDQIDYLTADEEDRFVVA
QANVEHDADGKITADSVTVRVKNGDIQVVAPESVDYLDVSPRQMVSVATAMIPFLEHDDA
NRALMGANMQRQAVPLVRSEAPFVGTGMERAAAYDAGDLIINKKGGVVENVSADIITVMA
DDGTRETYILRKFERTNQGTCYNQTPLVNIGDRVEAGQVLADGPGTHNGEMSLGRNLLVA
FMPWEGHNYEDAIILNQRVVEEDILTSIHIEEHEIDARDTKLGPEEITREIPNVSEDVLK
DLDERGIVRIGADVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHG
ETGKVIGVRRFSRDDDDDLAPGVNEMIRVYVAQKRKIQDGDKLAGRHGNKGVVGKILPQE
DMPFMPDGTPVDIILNTHGVPRRMNIGQVLEVHLGWLAAAGWKIDTEDPANAELLKTLPE
DLYDVPAGSLTATPVFDGATNEEIAGLLGNSRPNRDGDVMVDENGKATLFDGRSGEPFPY
PVSVGYMYILKLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGA
AYTLQELLTIKSDDVVGRVKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLSAD
GTPMELSGSDDDEFDQAGASLGINLSRDERSDADIA
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcaatattgcggggccaccgccgcgtgaggtgctggaaggacccatcttggca
gtctcccgccagaccaaggccaacatccctggggcccccgaacgcaagtcgttcgcaaag
attacggaaccaatcgaggttccggggcttctcgatattcagctcaactcctttgcatgg
ttgattggtacgcctgagtggcgcgcccgccagcaagaagagctgggcgactcggttcgc
gtaacaagcggacttgaagacatcttggaggagctatctcctatccaggattattccgga
aatatgtcgctgtctctttctgagcctcgcttcgaggacatgaagaacactattgatgag
tgcaaagacaaagacatcaactactccgcgccactgtatgtgaccgcagagttcatcaac
aacgaaacccaagagatcaaatcgcagaccgtattcatcggcgacttcccgatgatgacg
gacaagggcacgttcattgtgaacggtaccgagcgtgttgttgtctctcagctggttcgt
tctcctggcgtgtactttgatcagacgatcgataagtccaccgagcgtccactgcactcc
gtgaaggtcattccttcccgcggtgcatggctcgagttcgacgtggataagcgtgacacc
gttggtgtgcgtatcgaccgcaagcgtcgtcagcctgtgaccgttttgctcaaggccctt
ggttggaccactgagcagatcacggagcgcttcggcttctctgagatcatgatgtccacc
ctcgagtccgacggtgtatctaataccgacgaggctttgctggaaatctaccgcaagcag
cgtccaggtgagcagcctacccgcgacttggcacagtccctgctggacaactctttcttc
cgcgcaaagcgctacgacctagcaaaggtgggccgctacaaggtcaaccgcaagctgggc
ttgggcggcgacaacgagggcctcatgaccctcaccgaagaagacatcgcaaccaccttg
gagtacttggtacgcctgcacgcaggtgaaaccaccatgacgtcgccaaccggcgaggtc
atcccagtggaaaccgatgacatcgaccacttcggtaaccgtcgtctgcgtaccgtcggc
gagctgatccaaaaccaggttcgtgtgggtctttcccgcatggagcgcgttgttcgcgag
cgcatgaccactcaggatgctgagtcgatcacccctacctcgctgatcaacgttcgccct
gtttctgccgccatccgcgagttcttcggaacctcgcagctatcgcagttcatggaccag
aacaactctctgtccggtctgacccacaagcgtcgtctctccgcactgggcccaggtggc
ctgtcgcgtgagcgcgccggcattgaggtccgagacgttcacgcttctcactacggccgt
atgtgcccaattgagactcctgaaggtccaaacattggtctgatcggttcgcttgcgtcc
tacgctcgcgtcaacgccttcggcttcatcgaaacgccataccgcaaagtagaaaacggc
gttctgactgaccagatcgactacctgaccgctgatgaggaagatcgcttcgtcgtcgcg
caggcaaacgtcgagcatgacgctgacggcaagatcaccgcagacagcgtaaccgtgcgt
gtgaagaacggcgacatccaggtcgtcgcaccggaatccgtcgattacctcgacgtttcg
ccacgccagatggtttctgtggcaaccgccatgattccattcctcgagcacgacgacgct
aaccgcgccttgatgggtgcgaacatgcagcgtcaggctgtgccactcgtacgttctgag
gcaccattcgttggcaccggtatggagcgcgcagctgcctacgatgctggtgacttgatc
atcaacaagaagggcggcgtggttgaaaacgtctccgcagacatcatcaccgtgatggct
gacgacggaacccgcgaaacctacatcctgcgtaagttcgagcgcaccaaccaaggcacc
tgctacaaccagacgccgctggtaaacatcggcgatcgggtagaggccggtcaggttctc
gccgacggcccaggtacgcacaacggtgaaatgtccctcggacgcaacctcctcgtggct
ttcatgccatgggaaggccacaactacgaggacgctattatcctgaaccagcgcgtggtc
gaagaggatatcctcacctcgatccacatcgaagagcatgagatcgatgctcgcgacacc
aagctgggacctgaggaaatcacccgcgagatcccgaacgtttccgaagacgtgctcaag
gacctcgacgagcgcggtatcgttcgcatcggtgcggacgttcgcgacggcgacatcctc
gtcggtaaggtcaccccgaagggtgaaaccgagctgacccctgaagagcgtctgcttcgc
gccatcttcggcgagaaggcacgcgaagtccgcgacacctccatgaaggtacctcacggt
gaaaccggtaaggtcatcggcgttcgccgcttctcgcgtgacgacgatgacgatctcgca
ccaggcgtcaacgagatgattcgcgtctacgttgcccaaaagcgcaagatccaggacggc
gacaagctcgctggtcgccacggcaacaagggtgttgtgggcaagatcctgcctcaggaa
gatatgccattcatgccagacggcaccccagtggacatcatcctgaacacccacggtgtg
cctcgtcgtatgaacatcggccaggtgctcgaggttcacttgggctggttggccgctgcc
ggttggaagatcgacaccgaagacccagcaaacgctgaattgctcaagaccctcccagag
gatctctacgacgtcccagctggttcactgaccgcaaccccagtgttcgacggtgctacc
aacgaggaaatcgcaggtctgttgggcaattctcgtccaaaccgcgacggcgacgtcatg
gtcgacgaaaacggcaaggctacgctgttcgacggccgctccggcgaaccattcccatac
ccagtgtctgttggctacatgtacatcctgaagctgcaccacttggttgatgagaagatc
cacgcacgttccaccggtccttactccatgattacccagcagccactgggtggtaaggca
cagttcggtggtcagcgcttcggcgagatggaggtgtgggcaatgcaggcgtacggcgct
gcctacaccctgcaggaactcctgaccatcaagtctgacgacgtggttggccgcgtcaag
gtgtacgaggccattgtgaagggcgaaaacattccggatcctggtatcccagagtctttc
aaggtgctcctgaaagagctccagtcgctgtgcttgaacgtggaggttctctccgcagac
ggcaccccgatggagttgtctggatcggatgacgacgagttcgatcaggccggtgcctcc
ttgggcatcaacctgtcgcgcgacgaacgttccgacgcagacatcgcctaa
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