Corynebacterium deserti: CDES_02625
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Entry
CDES_02625 CDS
T04068
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cdx
Corynebacterium deserti
Pathway
cdx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cdx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDES_02625 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cdx03021
]
CDES_02625 (rpoB)
03400 DNA repair and recombination proteins [BR:
cdx03400
]
CDES_02625 (rpoB)
Enzymes [BR:
cdx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDES_02625 (rpoB)
Transcription machinery [BR:
cdx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDES_02625 (rpoB)
DNA repair and recombination proteins [BR:
cdx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDES_02625 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ALC04980
UniProt:
A0A0M4CN81
LinkDB
All DBs
Position
534691..538170
Genome browser
AA seq
1159 aa
AA seq
DB search
MAVSRQTKSVVDIPGAPQRYSFAKVSAPIEVPGLLDLQLDSYSWLIGTPEWRARQKEEFG
EGARITSGLENILEELSPIQDYSGNMSLSLSEPRFEDVKNTIDEAKEKDINYAAPLYVTA
EFVNNTTGEIKSQTVFIGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDQTIDKSTER
PLHAVKVIPSRGAWLEFDVDKRDSVGVRIDRKRRQPVTVLLKALGWTTEQITERFGFSEI
MMSTLESDGVANTDEALLEIYRKQRPGEQPTRDLAQSLLDNSFFRAKRYDLARVGRYKIN
RKLGLGGDHDGLMTLTEEDIATTIEYLVRLHAGERVMTSPNGEEIPVETDDIDHFGNRRL
RTVGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINVRPVSAAIREFFGTSQLSQ
FMDQNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHPSHYGRMCPIETPEGPNIGLIG
SLASYARVNPFGFIETPYRRIIDGKLTDQIDYLTADEEDRFVVAQANTHYDEDGNITDET
VTVRLKDGDIAMVNRTEVDYMDVSPRQMVSVGTAMIPFLEHDDANRALMGANMQKQAVPL
VRAEAPFVGTGMEQRAAYDAGDLVITPVAGVVENVSADVITIMADDGKRESYLLRKFQRT
NQGTSYNQKPLVNLGERVEAGQVIADGPGTYNGEMALGRNLLVAFMPWEGHNYEDAIILN
QNIVEQDILTSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLKDLDERGIVRIGADVRD
GDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGKVIGVRHFSREDD
DDLAPGVNEMIRIYVAQKRKIQDGDKLAGRHGNKGVVGKILPQEDMPFLPDGTPVDIILN
THGVPRRMNIGQVLETHLGWLASAGWSVDPEDPNNAELVKTLPKDLYEVPAGSLTATPVF
DGASNEELAGLLANSRPNRDGDVMVNADGKATLIDGRSGEPYPYPVSIGYMYMLKLHHLV
DEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGAAYTLQELLTIKSDDVV
GRVKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLSADGTPMELAGDDDDFDQA
GASLGINLSRDERSDADTA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctcccgccagaccaagtcagtcgtcgatattcccggtgcaccgcagcgttat
tctttcgcgaaggtgtccgcgcccattgaggtgcccgggctactagatcttcaactggat
tcctactcctggctgattggtacgcctgaatggcgtgctcgtcagaaggaggaattcgga
gagggagcccgcatcaccagcggccttgagaacattctcgaggaactctccccaatccag
gattactctggaaacatgtctcttagcctttcggagccacgcttcgaagacgtcaagaac
accattgacgaggctaaggaaaaggacattaactatgcggcaccgctgtatgtgaccgca
gagttcgttaacaacaccaccggtgaaatcaagtctcagactgtgttcatcggcgatttc
ccaatgatgacggacaagggaacgttcatcatcaacggaaccgaacgtgttgtggtcagt
cagctcgtccgctccccgggcgtctactttgaccagaccatcgacaagtcgactgagcgt
ccactgcacgccgtgaaggtaatcccttcccgtggcgcatggctcgagtttgacgtcgat
aagcgcgattcggtcggtgtacgcatcgaccgcaagcgtcgccagcccgtcaccgttttg
ctgaaggcattgggttggaccactgagcagatcaccgagcgcttcggtttctctgagatc
atgatgtccaccctggagtctgatggtgttgcaaacaccgatgaggctttgctggagatt
taccgcaagcagcgtccaggcgagcagcctacccgtgaccttgcgcagtctctgctggac
aacagcttcttccgcgcaaagcgttatgatcttgcgcgcgttggtcgttacaagatcaac
cgcaagcttggcctcggcggcgaccacgatggtttgatgactctgactgaagaggacatc
gcaaccaccatcgagtacttggtgcgcctgcacgcaggtgagcgcgtcatgacttcccct
aacggtgaagaaatcccagtcgagaccgacgacattgaccactttggtaaccgtcgtctg
cgtaccgttggcgaactgatccagaaccaggttcgtgtcggtctgtcccgtatggagcgc
gttgttcgtgagcgtatgaccacccaggatgcggagtccatcactcctacctccttgatc
aacgttcgtcctgtctctgcagctatccgcgagttcttcggaacttcccagctgtctcag
ttcatggaccagaacaactctctgtctggtttgacccacaagcgtcgtctgtcggctctc
ggtccgggtggtctgtcccgtgagcgtgctggcatcgaggttcgagacgttcacccatct
cactacggccgtatgtgcccaattgagactcctgaaggtccaaacattggtctgatcggt
tccctggcttcgtacgctcgcgtgaacccattcggattcattgaaaccccttaccgtcgc
atcatcgacggcaagctgaccgatcagattgactacctcaccgctgatgaggaagaccgc
ttcgttgttgctcaggcaaacacccactacgacgaagatggaaacatcactgatgagacc
gtcactgttcgtctgaaggacggcgacatcgccatggttaaccgcactgaggttgactac
atggacgtctccccacgtcagatggtttctgttggtaccgcaatgattccattcctcgag
cacgacgatgctaaccgtgcactgatgggtgcgaacatgcagaagcaggctgtgccactg
gttcgcgccgaggctcctttcgtgggtaccggtatggaacagcgcgcagcttacgacgcc
ggcgacctggttatcaccccagttgcgggtgtcgtggagaacgtctccgctgacgtcatc
accatcatggctgatgacggcaagcgcgagagctacctgctgcgtaagttccagcgcacc
aaccagggcaccagctacaaccagaagcctttggtgaacttgggcgagcgcgttgaagct
ggccaggttatcgccgatggtcctggtacctacaacggtgaaatggctcttggccgtaac
cttttggttgcgttcatgccttgggaaggccacaactacgaggatgcgatcatcctcaac
cagaacattgttgagcaggacatcttgacctcgatccacatcgaggagcatgagatcgat
gcccgcgacaccaagcttggtgccgaggaaatcacccgcgacatccctaacgtttctgaa
gaagttctcaaggacctcgatgagcgcggtattgttcgcattggtgctgacgtccgcgac
ggcgacattctggtcggtaaggtcactcctaagggcgagaccgagctgactcctgaagag
cgtcttctgcgcgcaatcttcggcgaaaaggctcgcgaagttcgcgatacctccatgaag
gtgcctcacggcgagaccggtaaggtcatcggcgttcgccacttctcccgcgaggacgac
gacgatctggccccaggtgttaacgagatgatccgcatctacgttgcccagaagcgcaag
atccaggacggcgacaagctcgctggccgccacggcaacaagggtgttgtcggcaagatc
ctgccacaggaggatatgccattccttccggacggcactcctgttgacatcatcttgaac
acccacggtgtgcctcgtcgtatgaacatcggtcaggttctggaaacccacctcggctgg
ctggcatctgctggttggtccgtggatccagaggatccaaacaacgctgaactggtcaag
accctccctaaggacctctacgaggttcctgcaggttccttgactgcaaccccagtgttc
gacggtgcttccaacgaggagctcgcaggcctgctcgccaactcccgccctaaccgcgac
ggcgacgtcatggttaacgcggacggcaaagcaacgcttatcgacggtcgctccggtgag
ccttacccatacccggtctctatcggctacatgtacatgctcaagctgcaccacctggtc
gacgagaagatccacgcacgttccactggtccttactccatgatcacccagcagccactg
ggtggtaaggcacagttcggtggccagcgtttcggcgaaatggaagtgtgggcaatgcag
gcctacggcgctgcttacaccctccaagagctgctgaccatcaagtctgacgacgtggtt
ggccgtgtcaaggtctacgaggcaattgtgaagggcgagaacatcccggatccaggtatt
cctgagtccttcaaggttctcctcaaggagcttcagtccctgtgcctgaacgtggaggtt
ctttccgcagacggcacaccaatggagctcgcgggtgacgacgacgacttcgatcaggca
ggcgcctcactgggcatcaacttgtctcgtgacgagcgttccgacgccgataccgcatag
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