Cardinium endosymbiont of Sogatella furcifera: CE557_817
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Entry
CE557_817 CDS
T05597
Name
(GenBank) beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cec
Cardinium endosymbiont of Sogatella furcifera
Pathway
cec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CE557_817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cec03021
]
CE557_817
03400 DNA repair and recombination proteins [BR:
cec03400
]
CE557_817
Enzymes [BR:
cec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CE557_817
Transcription machinery [BR:
cec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CE557_817
DNA repair and recombination proteins [BR:
cec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CE557_817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AXI24603
LinkDB
All DBs
Position
1:1043767..1047642
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AA seq
1291 aa
AA seq
DB search
MKKKPSSKQNCHMPSADTPANYTDLLEIQLKSFRDFFQLGVSPENRINEGLYKVFMEHFP
IEDAKRNYILEFIDYNLELPQYTPRECIERGLTYDVPLKAKLRLLQNDEHTGKYEGVEQE
VFLGNVPYMTDQGSFILSGVERVVVSQVHKSSGIFFFQNKHISGSNVYAAKVVPAKGVWI
EFSVDINSVMYIYLDRKKKIPITTMLRAIGYSSDKDILDIFGLADEVKATRAVLEKQMGR
KLAARVLKSCEECYVDEETGEEYLRTTHQVLVERNTVLDEAVIEVILSAEVASIILHKSE
AVYADYHLVYNSFGKDTTNDTKEAIEQIYRQLRNAEAPDEQTAREVVESLFFSSKRYTLG
EVGRYRINKKLNLDIPIKTCVLTQEDIVQIIHYLIKVVNGKAEVDDIDHLSNRRVRSVGE
QLFTQFGVGFSRLARTIRERINIRDNELFKPADLINARTLSSVINSFFGINPLSQLIDQV
NPLAEITHKRRVSALGPGGLSRDRAGFEVRDVHYSHYGRLCTIETPEGMNIGLISSLCMY
ARVNSMGFIETPYRRVADGKVDLSGDICYLNAAEEEHGNFAPANIRMDRDGVMLDNRVKV
RNGDEYPLVKPEQVNYMDVSSSQIASVAASLIPFLEHNDASRALMGSNMQRQAVPLIRPD
VPIVCTGVEKRVAKEFRGLPTAEGSGMVTYVDSRKVVVEYDRSAEEALVAFDEASVTYSM
DKFRGTNRSTCINLSPIVAKGSRVEKGQVLCEGYATKNAELALGKNLKVAFLSWKGYTFE
DGIVISERIVRDDVFTSIHIKEFILEVKDTKFGAEELTNEIPNVSEEAIAKLDLDGIVKV
GTEVKEGDILIGKITPKGEIDVTPEARLLKAIFGDKAGDVKNTSLRVPSGMEGIVIDTKI
FSSPERSKESKEKIKKELELLKRAHTKHLLKLRDIAIKKLSIVLDDIVTSGIYHQFGDEI
IAEGTKLTSLLIAEKLFPSKNIYRDESLYNVPAEANLLGDLVWSNWTADPSKNELVQRIA
SNYVKKCVASIVRFKRDRFTLEAGDGLPKGVVKVAKVYIAEKRKLKVGDKMSGRHGNKGI
VCKIVPQEDMPFLADGTPVDVVLSPLGLPSRMNLGQLYETVLGWAGDQLGKRYINPIFEG
MSLDQISSELDQAGLPTFGKTTVYDGGTGMPFSQKVTVGVVYLLKLAHLVDDKMHARSTG
PYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLNTKSDDVVGRSKAYEAIV
KGNNIPKPNLSESFNVLIHELRGLGLEITLV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaaaaaaccatctagtaaacaaaattgccatatgccttctgctgatacccctgca
aactatactgatttgcttgaaatccagttaaagtcgtttagggacttttttcaactgggt
gttagtccagagaatagaatcaatgaagggctctataaggtttttatggagcattttcct
attgaagacgctaagcggaactatatcctggagtttattgattacaatttagagcttccc
caatatacgcctcgggaatgtattgagcgtgggttgacctatgatgttcctttgaaagca
aaattacgcttattgcaaaatgatgagcatactggaaagtatgaaggtgtggaacaagag
gtttttttgggtaatgtaccctatatgaccgatcagggttcctttattttaagtggtgtg
gagcgtgtagtggtttctcaggtgcataagtcttctggtattttcttttttcagaataaa
cacattagtgggtcaaatgtttacgctgctaaagtggtgcctgccaagggggtttggatt
gaattttcggttgacatcaattcggtgatgtatatctacctagataggaaaaagaagatt
cccattaccaccatgttgcgtgccattggttatagtagcgataaagatattttagatatc
tttggccttgccgatgaggtaaaggccactagagccgtgctggaaaaacagatgggtcgt
aagttggctgctcgggttttaaaaagctgtgaggagtgttatgtggatgaagaaactggt
gaagaatatctacgtaccacccatcaagtccttgtagagcgcaatacggtattggatgaa
gccgttatagaggtgatcttatctgctgaagttgcttctattattttgcataaatcagaa
gcagtatatgcggattaccacctggtttataattcctttgggaaagatacgaccaatgat
accaaggaggccatagagcaaatttaccgtcagttgcgtaatgcggaggcaccggatgag
caaactgcgcgtgaagtagtagaaagccttttttttagcagtaagcggtacaccctgggt
gaggtaggtcgttataggatcaataaaaaattaaacctggacattccaatcaagacttgt
gtcttgacacaagaagatattgtacaaattattcattacctcatcaaagtggtcaatggt
aaagcagaagtagatgatattgatcacttaagcaatcgccgggttcgttcggttggcgag
caactttttacccaatttggcgtaggattctctcggttggctagaaccattcgggaacgc
attaatattagagacaatgagctgtttaagccagcagatcttattaacgcacgtaccctt
tcttctgtcatcaattctttctttggcattaatccactgtctcagttgattgatcaagtc
aatccactcgcagagattacccataagcgccgtgtatctgcgttaggacctgggggactt
tctagggaccgggccggttttgaggtccgtgacgtgcactattcccattatggcaggctg
tgtaccattgaaacaccagagggtatgaacattggtttgatttcctctctctgcatgtat
gcacgtgtcaacagtatgggttttattgaaacaccttatcgccgggtagcggatggtaaa
gtagatctaagcggtgacatctgttaccttaatgcagcagaagaagagcatggcaatttt
gctccggctaatataaggatggatcgagatggcgttatgctagataaccgtgtaaaggtc
cgcaatggagatgaatatccgttggtaaaaccagagcaggttaattatatggatgtttcc
agtagccagattgcttcagtggctgcttctttgattccatttttggagcacaatgacgcc
agtcgtgcattgatgggttctaacatgcaacgtcaggccgttcctttgattcgcccagat
gtacccattgtatgcaccggtgtagaaaaaagagtagcaaaagagtttaggggtttgcct
actgcagaaggtagtggtatggttacttatgtagatagtagaaaagttgtggtggaatat
gaccgctcagcagaagaagcgctcgttgcatttgatgaagcttcggtgacctattccatg
gataagtttagaggtaccaatcgaagtacttgcattaacttatcgcccattgttgctaaa
ggaagtcgggtagaaaaaggtcaggtgctctgtgaaggttatgcgactaaaaatgccgag
ttggcattaggtaagaatttaaaagtagccttcttgtcttggaagggatatacctttgaa
gatggtattgtcatttctgaacgtattgtgcgggatgatgtctttacctctattcatatc
aaggaatttattctggaggtaaaagataccaagtttggtgcagaagagttgaccaatgaa
attccaaatgtaagtgaagaagcgattgccaagttggatctggatggtattgtaaaggta
ggtacagaagtcaaagaaggcgatatattaattggtaaaattaccccaaaaggagagata
gatgttaccccagaagccaggcttttgaaagctatttttggtgataaagcaggcgatgtt
aagaatacctctttgcgcgttccatctggtatggaaggtattgtcatcgatacgaaaatt
ttctctagccccgaaaggagtaaggaaagtaaagaaaaaatcaaaaaagaactagaatta
ttaaaaagggcacataccaagcatttgctcaaactacgagatatagccattaaaaagtta
tccattgtgttagatgacatcgttactagtggtatttatcaccaatttggcgatgagatt
atagcagagggtaccaaactcacctccttattaattgctgaaaagctttttccttctaaa
aacatctatcgtgatgaatccctgtacaatgtgcctgcagaagccaatttacttggggat
cttgtatggagtaattggacagctgatccatctaaaaatgagctggtgcagcgtattgca
agtaactatgttaaaaagtgtgtggcctctattgtacgttttaaacgtgaccgatttaca
ctagaagcaggtgatgggctacccaagggggtggtaaaagtagcgaaggtctatattgca
gaaaaaagaaagcttaaggtgggtgataagatgtccggaaggcatggtaataaaggcatt
gtttgtaaaatagtgcctcaagaagatatgcctttcttagcagacggtacaccggtagac
gttgtattgagtccattgggcttaccttcgcgtatgaacttaggtcagttatatgaaacc
gtattaggatgggccggtgatcagttaggtaaacggtatatcaatcctatttttgagggg
atgagcttagatcagatttccagtgagttagatcaagctggcttacctacttttggtaaa
acaaccgtttatgatggtggaacgggtatgccatttagtcaaaaagttaccgttggcgtg
gtctacctactcaagttggcccatttggtagacgataaaatgcatgcacgttctacaggg
ccttattctttgattacccagcaaccattaggtggtaaagcccaatttggtggacaaaga
tttggtgaaatggaggtatgggcattggaagcctatggcgctgcttatacattacaagaa
atgctcaataccaaatcagatgatgtagtcggaagatctaaagcctatgaagccattgtg
aaaggtaataatattccaaagcccaatttatccgaatcatttaatgtattgattcatgag
ctaagaggcctagggcttgaaattacacttgtatga
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integrated database retrieval system
