Cellvibrio sp. KY-YJ-3: D0B88_03630
Help
Entry
D0B88_03630 CDS
T06234
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Pathway
cek00040
Pentose and glucuronate interconversions
cek01100
Metabolic pathways
cek02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
D0B88_03630
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
D0B88_03630
Enzymes [BR:
cek01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
D0B88_03630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
CBM_35
CBM_6
CBM_35_2
Motif
Other DBs
NCBI-ProteinID:
QEY11430
LinkDB
All DBs
Position
complement(834451..837027)
Genome browser
AA seq
858 aa
AA seq
DB search
MTIFKHTSKHCMHWLSLGLVLSAASLLATAVHAQTLGTNLAITGPSAGADGSGFNDTKLV
RDGDTGTYTQASGTSNQRVSVKWGSAVNFNTVILRESGSTVGTWELVNNDTGAVLATGSG
IGAARTVNLGSVSMKKLNLIVSGSSPLRMAEIEVYNASGTASSSSVVSSAVASSSAPSSI
AASSTPASSSAPASQTVSYEAESGSLSQAAVESNHTGYNGSGFVNFDNLVGSSAQWTVNQ
ASAGTATITFRYANGTTSNRAMAISVNGTVINSALAFNGTGAWATWATQSLTANLNAGSN
VIRAVSTTSDGGPNLDQLSVTGGTVVGNSSSSQSSVASSVAPSSTPASSSVASSTPSSVA
PSSTAQSSSSVASSQVNSSASSVNSSSGAISAECIQLATNPSVNWRDTSLQSDQAIVECL
SKTLGKPVGYGENAKGGYDPNGNSKLTIITKNSSTSVEQQILNAITGEEHNWIVFDKIQF
AQPHEIGMYRLGCSNPTVQSLLGATEAECVNYTQWCAKNGVSSANCVTQFFNTAMNKSNN
PIRNPVIGSNKTIDGRGSEAYFLFSGFAIGKDSTGSPTQTATSVILTHLNFKGAGHTEDH
YCDPDMIRSTGASHDIWIHKNTFDTTGDSAFDVKVGAYGITMSFNEILDVKRATLHSSSD
SHTIDAQIRTTMHHNLFVTRDASYDLLGNTLRRVPLIRRGSSHMLNNAFINYRKDLLSIR
VGASVLQEDNMFVVNRIHQEKSDLAASLAELQGNLIKDVTGGNYRGERNFLWFGDAACNV
DESTKTGFTISSGTVANLMSNYSSASQTTLNNWRFAAGQDLVDYLSATAGKYGEMPFNSP
LAGDRFYVLGLGKVSCQN
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgactattttcaaacacacgtccaagcactgcatgcattggctaagcctgggattggtg
ctcagtgccgccagcttgcttgccactgcagtacacgcacaaaccctgggcaccaacctt
gccattaccggccccagcgcgggcgccgatggctcgggttttaacgacaccaagctggta
cgcgatggcgacaccggcacctatacccaagccagcggcacctccaaccaacgcgtttcg
gttaagtggggcagtgcagtgaactttaatacggtgatcctgcgcgagtcaggcagcacc
gtgggcacctgggagctggtgaacaacgataccggcgcggtattggcgacaggttctggc
ataggcgccgcgcgcactgtgaatctgggttcggtgtcgatgaaaaaactgaacctgatt
gtcagcggcagctcacccctgcgcatggcggagattgaggtgtacaacgccagtggtact
gccagctccagctcagttgtttccagtgccgtcgcctcaagttcagcgccgtccagtatt
gccgcatccagtaccccggcttccagcagcgcacccgcgagccagacagtgagctacgaa
gccgagagtggcagcttgtcgcaagcggcagtggaatccaatcacacaggctacaacggc
agcgggtttgtgaacttcgacaatctggtcggcagttccgcccagtggaccgtcaatcaa
gccagtgccggcaccgcgactatcaccttccgctatgccaatggcaccaccagcaatcgc
gccatggcgatcagtgtcaatggcacggtgatcaattccgcgctggcgtttaacggcacc
ggcgcctgggcgacctgggcgacacaatcgctcacggctaatttgaatgccggtagcaat
gtgattcgcgcggtatccaccaccagcgatggcggcccgaatctggatcagttatcagtg
accggtggaacggtggtgggcaactcctccagcagccagtcatcggtagcttcatcagta
gcgccgagcagcacaccggcctcatcatcggtggcctcatcaacgccttcatcagttgca
ccttcatcaaccgctcagagcagttccagtgtggcttccagccaggtcaacagcagcgca
tcctcggtgaattcctccagcggtgccatcagcgccgagtgtatccagttggcgactaac
ccctcggtgaactggcgcgacacttcgctgcaatcggatcaggcgattgtggagtgtctc
tccaaaaccctgggcaaaccggtgggttacggtgaaaacgccaagggtggatacgaccct
aacggcaatagcaaactcaccatcatcaccaaaaattccagcacctcggttgagcagcaa
atcctgaatgcgattactggcgaagagcataactggatcgtattcgacaaaatccaattt
gcgcagcctcacgaaattggcatgtaccgtttgggttgcagcaacccgacagtgcaatcg
ctgctcggcgcaacggaagccgagtgtgtgaactacacgcaatggtgcgcaaaaaatggt
gtgagcagtgcaaattgtgtaacgcaattttttaacaccgcgatgaacaaatccaacaac
ccgattcgcaacccggtgataggctccaacaaaactatcgatggccgcggcagcgaggcg
tacttcctgtttagcggttttgcgattggtaaagactccactggctcgcccacccaaacc
gcgaccagtgtcatcctcacgcaccttaactttaaaggcgcaggccacaccgaagaccat
tattgcgacccggatatgatccgctccaccggtgcatcacacgatatctggattcacaaa
aacaccttcgataccaccggcgattcggcgtttgatgtgaaagtgggtgcttatggcatc
accatgtcgttcaatgaaattctcgatgtgaaacgcgcaacactgcacagttccagcgac
agccacaccatcgatgcgcaaatcagaaccactatgcaccacaatttatttgtgacgcgc
gatgcgagttatgacttgctgggcaataccctgcgccgcgtaccgctgatccgccgtggc
agctcgcacatgttgaacaatgcatttatcaactaccgcaaggatctgttgagcattcgc
gtcggtgcgagtgtattgcaggaagacaatatgtttgtggtcaatcgcattcatcaggaa
aaatctgacttggccgcatcgcttgcggaactgcaaggcaacctgattaaggatgtgacc
ggcggtaactatcgcggtgagcgcaacttcctctggtttggtgatgcagcatgtaatgtg
gatgaatcgaccaaaaccggttttaccatcagttccggtacggtggcgaatttaatgagc
aattattcctctgcctcacaaaccacactcaacaactggcgctttgctgcaggtcaggat
ttggttgactacctgagcgccacggcgggtaaatacggcgagatgccattcaactcacca
ctggcgggcgaccgtttttatgtgctgggtttgggtaaggtatcctgccaaaactaa
DBGET
integrated database retrieval system
