Cellvibrio sp. KY-YJ-3: D0B88_03705
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Entry
D0B88_03705 CDS
T06234
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cek
Cellvibrio sp. KY-YJ-3
Pathway
cek00040
Pentose and glucuronate interconversions
cek01100
Metabolic pathways
cek02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
cek00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
D0B88_03705
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
D0B88_03705
Enzymes [BR:
cek01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
D0B88_03705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
QEY11445
LinkDB
All DBs
Position
complement(852249..855956)
Genome browser
AA seq
1235 aa
AA seq
DB search
MKHLLSRYSWRNLSAFCAIALSANSMALDLNVIALNKLSETRIDRTTYDYVFSVTVQNGA
QAVNNAAQTLTASGAGTTILDGSVLLGNLASGEQITPADTIKIRHNRALPFDQSALIWSA
SGAEVSSSSSAASSVANLELLNEPFNIDKATLFSAAYRSISTDPGAALFFVTGGNSGITI
ANNELTIAAGRFTIGNKPPRSNTTIGDTTANGDFDLSKPYRISFRIVASAGSGAVQVMVD
NNTTSAGNSLHGSASRVFNASANSLVAGQMIELLPTVGTATSFISLRAESSASVTIDDLV
IEYLDGTATSSSSAPSSTAPSSTPASASVISSSFSSSSVATSVNTSSSVIASAMPSSTAT
SESSSSTASYDGALRPAKIEGFAAHAAVTGGQGGAVVMVTSGTQLNAALCARATMSTPIT
ILVNGTISHANTTAQGCNTQADVIEIKQMSNVSIVGVGTNALFEEIGIHVRDASNIIIQN
VHVRNVKKSGSPTSNGGDAIGMETNVNRVWIDHNWLEASGGEKDGYDSLLDMKAGVTNVT
VSYNLFNDSSRAGLIGSSDSDNKNTNITFHHNWYKNIEQRTPLIRHALVHMYNNYWSNDT
IDYMFHAINSRMNAKALVESNYFYNVNNPLLASDDSDVAGCWQTNNENTVLPSIYYSRTV
GNGALVIPEVVDGQLQSTCSVTVPYTVEMDHSSTVPEIVMANAGVGKIVIGVDASSSSSL
ASSSASSEALSSVTSSHSVIGDSSSSAISSSLSSSSSSAPYIPGDVNLSADCINLATNPN
VNWRDTALQTDQEIVECLYKTLGTPVGYGENAKGGYDPNGNSKLTIITKNSSTSVEQQVL
DAISGEAHNWIVFDKIQFAQPTEIGMYRLGCSNATVQSILGATEAECVNYQQWCAKNSVS
ESACVSTFFNTAMNKSNNPIRNPVIGSNKSIDGRGSEAHFLFSGFAIGKDSTGQPTQTAT
SVILTHLNFKGAGHTEDHYVDPDMIRSTGASHDIWIHKNTFDTTGDSAFDVKVGAYGITM
SFNEILDVKRATLHSSSDSHTIDAQIRTTMHHNLFVTRDASYMALGNTLRRVPLIRRGTS
HMLNNVFVNYRKDLLSIRVGASVLQQDNMFVVNRIHQEKADLAASLAELKNNLIRDVTGG
NYRGEGNFVWFGDAACNLDETTKTGFTISSGAVANLAENYSATSQGLLGNWYFAAGQDLV
DYLSATAGKYGQVPFNSPLSGDRHYVLGLGKVACQ
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatttattatcgcgttactcatggagaaatttatcagcgttctgtgctattgca
ttgtcggccaacagtatggcgttggatctcaacgtgatcgcactcaataaattgagtgaa
acccgtatcgatcgcactacttacgattatgtattttccgtcaccgtgcaaaacggtgcg
caagccgttaacaatgcagcgcaaaccttaaccgccagcggtgcgggcacaacgattctt
gatggcagtgtactgctcggcaatctcgccagcggcgaacaaattaccccagcggatacc
ataaaaatccgtcataaccgtgcgctgccatttgatcaatcggcattgatctggtcggcg
agtggcgcagaggtaagctcatcgtccagcgctgcaagcagtgttgcaaacctggaattg
ttgaacgaaccttttaatatcgataaagcgactttgttcagtgccgcctatcgttcaatt
tcaactgaccctggtgcggccttattttttgtaacgggtggcaacagtggcataactatc
gctaacaatgaattaaccattgcagcgggacgtttcactattggcaataaaccgccgcgc
agcaataccaccattggcgacactaccgccaatggcgattttgatttaagtaaaccttac
cgaatttcttttcgcatagttgccagcgccggttccggtgctgtgcaagtgatggtggat
aacaacactaccagcgctggcaattcattacacggcagtgcatcgcgggtatttaatgcg
agtgcaaacagtttagtggcgggacaaatgattgaattgttaccgacagtgggaactgca
acttcatttatatcgctgcgcgctgaaagttctgcatcagtaacgattgatgatttggtc
attgaatatctggatggcacagccactagttcttcatctgcgccatcctctacagcaccc
tcgtcgacaccggcaagtgccagcgttatatcgtcgagcttttcatcatcaagtgttgct
acctcggtgaatacatcgtccagtgttattgcctcggcaatgcccagcagcacagcgacc
agcgaatcctctagcagtactgcatcttatgacggcgcattgcgtccggcgaaaatagaa
ggctttgcagcccatgcggctgtgactggtgggcaaggtggtgcagtagtaatggtgact
agtggtacgcaattaaatgcagcgctttgcgcacgcgccactatgagcacaccgattacg
attttggtgaacggcactatcagccacgcgaataccaccgcacaaggttgtaatacccaa
gccgatgttattgaaataaaacaaatgagtaacgtttccattgttggtgtaggtactaac
gcgctgtttgaagaaattgggattcatgtgcgcgatgcgtccaacattattattcaaaac
gttcatgtgcgtaacgtgaaaaaaagcggttcacctacgtccaatggcggcgatgcgatt
ggcatggaaaccaatgtgaatcgtgtgtggattgatcacaattggttggaagcatccggt
ggtgaaaaagacggttacgattcgctgctggatatgaaagcaggtgtaactaatgtgacg
gtttcctacaatctatttaacgattccagtcgcgccggtttgatcggctccagcgatagc
gacaacaaaaataccaatattactttccatcacaattggtacaaaaatattgaacagcga
acgccgttaattcgccatgcgctcgtgcatatgtacaacaactactggtctaacgacact
atcgattatatgtttcatgcgatcaactcgcgcatgaatgctaaagctctggtggagagc
aattatttttataatgttaataatccattgcttgcatcggacgattcggatgttgccggc
tgctggcaaaccaataatgaaaataccgtactgccgtcgatttattacagccgcacagtt
ggcaatggtgcattggttattccggaagtagtggatggacaattgcaatcaacctgcagc
gtgaccgtgccttacaccgttgaaatggatcactcatccacagtaccggaaattgtgatg
gctaacgcaggggttggaaaaattgttatcggtgttgatgcttccagcagcagttctctt
gcatcctcaagtgcaagtagcgaggcactgagttcagttacttcgtcgcatagtgttatt
ggcgattcatcaagctctgccatttcatctagtctgagcagttcatcatcgagtgcacct
tatattcccggcgatgtaaacctgagtgcagactgtattaatctcgccactaatccgaac
gtcaactggcgcgataccgccttgcaaaccgatcaggaaattgtggagtgtttatataaa
accctcggtactccagtgggctatggtgaaaatgccaaaggcggatacgatcctaacggc
aacagcaaactcactatcatcactaaaaattccagcacctcggttgaacagcaagtgttg
gatgcaattagcggtgaagcgcacaactggatagtgttcgacaaaatccaatttgcgcag
ccaaccgaaattggtatgtaccgtttgggttgcagcaatgcgactgtgcaatccattctc
ggcgcaaccgaagcagagtgtgtgaattaccagcagtggtgcgcaaaaaacagtgtgagt
gaatcggcctgtgtgagcactttctttaacacggcgatgaacaaatccaataacccgatt
cgcaatccggtgattggctccaacaaaagtatcgatggtcgcggcagtgaagctcacttc
ctgtttagcggttttgcgattggcaaagattccactggccaaccgacacagaccgcaacc
agtgtgattctcacgcacttgaactttaaaggcgcaggccacaccgaagaccattatgtt
gacccggatatgattcgctccaccggcgcatcacacgatatttggattcacaaaaatacc
ttcgataccaccggcgattccgcgtttgatgtgaaagtcggcgcctacggcatcaccatg
tcattcaacgaaattctcgatgtgaaacgtgcaacgctacacagctccagcgatagccac
acaatcgacgcgcaaatcagaaccaccatgcaccacaatttatttgtgacgcgcgatgcg
agttatatggcactgggtaataccctgcgccgcgtaccgctgatccgccgcggtacctcg
catatgttgaacaacgtgtttgtgaattatcgcaaagacctgctcagcattcgtgtgggc
gccagcgtgttgcagcaagacaatatgtttgtggtcaatcgcatccatcaggaaaaagcg
gatctggcagcatcactggcggagctgaaaaataatttgatccgcgatgtgaccggcggt
aattatcgcggcgaaggcaactttgtttggttcggcgatgcggcctgcaacctcgatgaa
accaccaaaaccggctttaccattagctcgggtgcagtggctaatttggcggagaactat
tccgccacctcacagggcctattgggcaattggtattttgcggctgggcaggatctggtg
gattacctgagcgctacggcaggtaaatatggtcaggtgccgtttaattcgcctttgtcg
ggcgaccgtcattatgttctgggtttgggtaaggtggcctgtcagtaa
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integrated database retrieval system
