Caenorhabditis elegans (nematode): CELE_M03F8.3
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Entry
CELE_M03F8.3 CDS
T00019
Symbol
syf-3
Name
(RefSeq) Pre-mRNA-splicing factor Syf1/CRNKL1-like C-terminal HAT-repeats domain-containing protein
KO
K12869
crooked neck
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_M03F8.3 (syf-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cel03041
]
CELE_M03F8.3 (syf-3)
03036 Chromosome and associated proteins [BR:
cel03036
]
CELE_M03F8.3 (syf-3)
Spliceosome [BR:
cel03041
]
Complex B
Other components
Prp19-related factors
CELE_M03F8.3 (syf-3)
Complex C
CELE_M03F8.3 (syf-3)
Chromosome and associated proteins [BR:
cel03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
CELE_M03F8.3 (syf-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
Suf
TPR_19
TPR_CcmH_CycH
TPR_16
TPR_17
ARM_TT21
SNAP
ARM_TT21_5th
TPR_9
Mad3_BUB1_I
RAB3GAP2_C
U3_assoc_6
Motif
Other DBs
NCBI-GeneID:
178979
NCBI-ProteinID:
NP_001122979
WormBase:
WBGene00019762
Ensembl:
WBGene00019762
UniProt:
A9D4S6
LinkDB
All DBs
Position
V:5940022..5943366
Genome browser
AA seq
747 aa
AA seq
DB search
MSDDEAAVPGNKPIRLPKKAAKVKNKAPAQLQITAEQLLREAKERELELIPPAPKTKITD
PDELKEYQRKKRKEFEDGIRKNRMQLANWIKYGKWEESIGEIQRARSVFERALDVDHRSI
SIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERW
IEWEPPEQAWQTYINFELRYKEIDRARSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNA
RAAYEKAMEYFGEEDINETVLVAFALFEERQKEHERARGIFKYGLDNLPSNRTEEIFKHY
TQHEKKFGERVGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVY
ERAIANIPPHSYFQEKRYWRRYIYLWINYALYEELVAKDFDRARQVYKACIDIIPHKTFT
FAKVWIMFAHFEIRQLDLNAARKIMGVAIGKCPKDKLFRAYIDLELQLREFDRCRKLYEK
FLESSPESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALDMPELLWKAYIDFEIACEE
HEKARDLYETLLQRTNHIKVWISMAEFEQTIGNFEGARKAFERANQSLENAEKEERLMLL
EAWKECETKSGDQEALKRVETMMPRRVKKRRQIQTEDGVDAGWEEYFDYIFPQDQAAKGS
FKLLEAAARWKREREEAAARAAQELDAPIPEGDDDEEKEEAGKDAEEKVREGDSDTDLSE
SSSSSDSESSSSSSSDSSDSSDDDEDK
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgacgaagccgcagttccaggcaataagccaattcggctcccaaaaaaggct
gcgaaagtgaaaaataaggcaccagctcaacttcaaatcacagccgaacaattgctccga
gaagcgaaagaacgagagcttgaactcattccacccgcaccaaaaacaaaaatcaccgat
ccagatgaattgaaagaatatcagcgaaaaaagaggaaggagttcgaagatggaattcgt
aaaaatcgtatgcaacttgccaattggattaagtatggaaaatgggaagaatcgattgga
gagattcaacgagctcgatcagttttcgaaagagctttggacgttgatcatcgttcaatc
agtatttggctgcagtacgctgaaatggagatgcgatgcaaacaaatcaatcacgcgaga
aacgtgttcgatagagcaatcaccattatgccacgtgccatgcaattctggttaaaatac
tcctacatggaggaagtgattgagaacattcccggagccagacaaatctttgagcgatgg
attgagtgggaaccaccagagcaggcttggcagacttatatcaactttgagcttcgctat
aaggagattgatcgtgctcgttctgtgtatcagaggtttttacatgttcacggaattaat
gtacaaaactggatcaaatacgccaagtttgaagaacgaaatggatatattggtaatgct
agagcagcgtacgagaaagctatggaatactttggagaagaagatatcaatgagacggtg
ctggttgcttttgctctttttgaagagcgtcagaaagaacacgaaagagcacgtggaatc
ttcaaatacggattagacaatcttccatcgaaccgaaccgaagaaattttcaagcactac
acgcaacacgagaagaagtttggagaacgagtgggaattgaagatgtaattatcagtaaa
agaaagacacagtacgagaaaatggttgaagagaatggatacaattatgatgcatggttc
gattatttacgattgttggagaatgaggaaactgatcgagaagaagttgaagatgtctac
gagagagcaattgctaatattccgcctcattcctactttcaggaaaaacgctattggcgt
cggtacatttacctctggatcaactacgctttgtatgaagaactcgttgcaaaagatttt
gatagagctcgtcaggtctacaaagcatgtattgatatcattccacacaaaactttcaca
tttgcaaaagtctggatcatgtttgcgcattttgaaattcgacagctggatcttaacgct
gcaagaaagattatgggtgttgctattggaaagtgccccaaggacaagctgttccgtgcg
tacatcgatttggagctgcaacttcgtgaattcgatcggtgtcggaaactctacgagaag
tttttagaaagttctccagaaagttctcaaacttggatcaaattcgccgagcttgaaact
ctccttggtgatactgaccgttctcgtgctgttttcacaattgccgtacaacaaccggct
cttgatatgcctgaacttctttggaaagcctatattgactttgaaattgcttgtgaggaa
cacgaaaaggctagagatctctatgaaaccctactccaacgaacaaatcacattaaagtc
tggatttcgatggctgaatttgaacaaaccattggaaactttgaaggggcgcgtaaggcg
tttgaaagagctaatcaatcattggagaatgccgagaaagaggaacgattgatgttactg
gaagcatggaaagaatgtgaaacgaagagcggtgatcaagaagcgttaaagagagttgaa
actatgatgcctcgtagagtcaaaaaacgacgtcaaatacaaactgaagatggtgtcgat
gcaggatgggaggaatactttgactacatattcccacaagatcaagcagcaaaaggcagt
ttcaaacttctcgaagcagccgccagatggaagagggaaagagaagaagctgcagcacga
gcagctcaggaacttgatgctcctattccagaaggagatgatgatgaagaaaaagaggaa
gctgggaaagatgctgaagaaaaagtacgagaaggcgatagcgatacggatttatcggaa
agcagtagtagcagcgatagtgaatcatcatcatcatcatcatctgactcttctgattcc
tctgatgatgacgaagacaagtaa
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integrated database retrieval system
