KEGG   Caenorhabditis elegans (nematode): CELE_T13H5.4
Entry
CELE_T13H5.4      CDS       T00019                                 
Symbol
prp-9
Name
(RefSeq) Matrin-type domain-containing protein
  KO
K12827  splicing factor 3A subunit 3
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_T13H5.4 (prp-9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cel03041]
    CELE_T13H5.4 (prp-9)
Spliceosome [BR:cel03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    CELE_T13H5.4 (prp-9)
 Complex B
    CELE_T13H5.4 (prp-9)
 Complex C
   U2 SnRNP specific factors
    CELE_T13H5.4 (prp-9)
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd TPPII_C zf-met
Other DBs
NCBI-GeneID: 174364
NCBI-ProteinID: NP_495799
WormBase: WBGene00011758
Ensembl: WBGene00011758
UniProt: Q22469
LinkDB
Position
II:complement(8523494..8525396)
AA seq 500 aa
MDSCLETIRNLHEERERLIDITVKEKIAEKLTHKAKVNSEQRVKTFVDRYYSVSAELAKF
YKDEDGSKSMEMDSVSGPNEFAEFYSRLKVIKDAHRRNPDELAEPLTVEFQKINEEIINP
ERAEPDMVEFSDEEAYGRFLDLHAQYDKFINLKNIKRVDYMTYLLNFEKFTEIPKNTTKK
TGAYKEYINSLKDYLVSFMQRTRPLHDLDSVFSEVNQTVERAFKAGNLPGWEADKNKNGP
QAAAVDLSPYNSAEELEGLGLERLKGALMAIGLKCGGTLKERADRLFATKGHKLSDLEKA
AMSSNNSDAEKQNAKNLTLAQTEAHIMALADILAEERTGTRENVERKQARSAGEVEEEEE
EEIVIEEEEEIDESAPYNPKNLPLGWDGKPIPYWLYKLHGLNLSYSCEICGNQTYKGPKA
FQKHFNEWRHSHGMRCLGIPNTSHFANITKIKDALDLWNKLKTEKEMAKWNPDIDEEYED
SSGNVVTRKMYEDLKRQGLL
NT seq 1503 nt   +upstreamnt  +downstreamnt
atggattcgtgtctagaaaccatcagaaacttgcacgaggaacgggaacgattaatcgat
ataactgttaaggaaaaaattgcagaaaagttaacgcataaggccaaagttaatagcgaa
cagcgagtgaaaacatttgtcgataggtactattcagtttccgccgagcttgccaaattt
tataaagatgaagacggttcgaagagcatggaaatggattcagtttctggtccaaatgag
ttcgccgaattttattcaagactgaaggtcatcaaagatgcgcacagaagaaatccagac
gagcttgccgaaccactcaccgtggagttccaaaaaatcaatgaagaaatcatcaaccct
gaaagagccgagccagatatggttgaattcagtgatgaagaagcttacggtcgttttcta
gatcttcatgcacaatacgacaaattcattaacttgaagaacatcaaaagggttgattac
atgacgtatttgttgaattttgagaaattcacagagataccgaaaaatactaccaagaag
acaggagcatataaagaatacatcaattccttaaaagactatcttgtttctttcatgcaa
cgaactcgcccactccatgatctcgattcagttttctctgaggttaatcaaactgtagaa
agagcatttaaagcagggaatcttcctggttgggaagctgataaaaacaagaacggacct
caagcagctgctgtggatttatctccatacaatagtgctgaagaactcgagggattggga
ttggaacgtttgaaaggagctctcatggcaattggtctgaaatgtggaggaactctgaaa
gaacgcgctgatcgtcttttcgctaccaaagggcataaactgtcagatctcgaaaaagca
gcaatgtcttcaaataattccgatgccgaaaagcagaacgctaaaaatttgacattggca
caaacggaagctcatattatggcacttgctgatattctagctgaagaacgtactggaact
cgcgaaaatgtcgagagaaaacaagctagatctgctggagaggtcgaagaagaggaggag
gaggaaattgtgatcgaggaagaggaagaaattgatgagagtgcaccatataatccaaaa
aatctaccgcttggttgggatggaaagccaattccgtattggttgtacaaacttcacggc
ctcaatctatcatattcatgtgaaatctgtggaaatcaaacttacaaaggtccaaaggcg
ttccaaaagcatttcaacgagtggcgacattctcatggaatgagatgtcttggaattccg
aatacctctcatttcgccaacattacgaagatcaaagatgcactggatttatggaataaa
ttgaaaaccgaaaaggagatggctaaatggaatccggacatcgatgaggagtacgaggac
tccagcggaaatgtggtcaccaggaagatgtatgaggatttgaaaagacaaggacttctg
tag

DBGET integrated database retrieval system