Coxiella endosymbiont of Amblyomma sculptum: EGQ50_01530
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Entry
EGQ50_01530 CDS
T06434
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cend
Coxiella endosymbiont of Amblyomma sculptum
Pathway
cend03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cend00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EGQ50_01530 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cend03021
]
EGQ50_01530 (rpoB)
03400 DNA repair and recombination proteins [BR:
cend03400
]
EGQ50_01530 (rpoB)
Enzymes [BR:
cend01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EGQ50_01530 (rpoB)
Transcription machinery [BR:
cend03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EGQ50_01530 (rpoB)
DNA repair and recombination proteins [BR:
cend03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EGQ50_01530 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
DUF507
Motif
Other DBs
NCBI-ProteinID:
QHG92431
LinkDB
All DBs
Position
317983..322098
Genome browser
AA seq
1371 aa
AA seq
DB search
MVQSNAENRRTVAVSYTEKLRARVNLGKREVEVLKTPYLLETQIEFYRSFLQKDVAPESR
RDTGLHAAFNSVFPISSYSGHAELAYINYSLDEEPVFDVEECKLRGLTYAASLKVSMRLS
IYDKSILTGKKIIKDVKEQEVYMGEIPLMTETGSLIINGTERVVVSQLHRSPGVFFEHDK
GKTHSSGKLLYSARIIPYRGSWLDFEFDYKDCLFARIDRRRKLPATVILKALGYDTEKIL
EVFYEINSFCLNETSVTLKLIPKRLRGELATMEIRDKKGKIIVKPNRRISTRHVRLIEQA
GIDKLELSDDYLYGRVIGKAIVDTETEEVVAQANETITPDLLRTLRTRKISSLHTLYINE
IECGSYISDTLRLDNTENQLEALAEIYRIMRPGEPPTKEAAESLFENLFFSPERYDLSAV
GRMKFNRRVGRKQSTGLWTLSKEDIVDVLRVLVKIRDGKGDVDDIDHLGNRRIRSVGEMV
ENQFRIGLVRVERAVKDRLNLADIENLVPQDLINAKPVSAAIKEFFGSSQLSQFMDQNNP
LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVFAR
ANEYGFLETPYRKVLDGTVTDKIEYLSAIEEGDYYIAQANTSTDETGRMVDELVSCRHKG
EFTLTVPDKVDYIDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTIRSEAPLV
GTGMERTVAVDSGVTVVAKRDGIVDSVDASRIVVRINENGGDDIGVDIYNLTKFSRSNQN
TCINQYPIVEIGDRIQKGDVLADGPSTDLGELALGQNLLVAFMPWNGYNFEDSILISERL
VEEDRFTTIHIQEFTCIARDTKLGPEEITADIPNIGESALAKLDESGIVYIGAEVGPSDI
LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRATPGTIGTVIDVRIFTREGVKKD
KRALEIEKLELANIEKDLNDRFRIREYALFQNVKKFLINQVALSVESPKKHTTIGRDFLE
TLPRNRWFEIQLRDGSAAKRLESAYERYKKLCKMRDEKLKDFHQKLTQGGDLAPGVIKIV
KVYLAVKRRIQPGDKMAGRHGNKGVISTIVPIEDMPYLKDGTPVDIVLNPLGVPSRMNIG
QVLETHLGWAAKSLGAKIGDLLDQKHTDLKRLRGLLKSIYDLSKVQKFSVEDLSDTEIVI
LANNLRKGVPVSSPVFDGATEEEIKRLLEMANLPISGQSCLYDGRTGKKFDRAVTVGYMY
MLKLNHLVDDKIHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML
TVKSDDVVGRTRMYKNIVDGDHRMDAGMPESFNVLIKEIRSLAIDIDLEND
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaatcaaatgccgaaaatagaaggacagttgcagtttcttacaccgagaagctg
cgcgcgcgcgtcaacttaggcaagcgtgaggtcgaagttctcaaaacgccgtatctgttg
gaaacacaaatcgaattctatcggtcttttttacaaaaagatgtcgctcctgaatctcga
agagatacgggactgcatgccgcattcaactctgtattccctatttccagctattccggt
cacgcagaattggcgtatatcaattacagtttagacgaagaacctgttttcgatgttgaa
gaatgtaaattgcgaggtctaacctacgccgcttctttgaaagtaagtatgcgtctatca
atttacgataaaagtatacttacaggaaaaaaaatcattaaagacgtcaaagaacaagaa
gtatatatgggcgaaattccgttgatgacagagacaggaagtctcataattaacggaacc
gaacgagtggttgtttctcaattgcatcgatctcctggagtgtttttcgaacacgataaa
ggaaagactcattcttctggaaaattgttgtattcggctcgaatcattccttatcgtggt
tcgtggttggactttgagtttgactacaaagattgtttatttgcgaggattgatcggcgt
cgaaaattaccggcgacggtaattttaaaagctttaggttacgataccgaaaagattctt
gaagtgttttatgagatcaactctttttgtctcaatgagacgagtgtcactttgaaacta
atacccaaaagactgcgtggtgaattggcgacaatggagataagagacaaaaaaggaaag
ataattgtcaaacctaatcgtcgtatttcaacccgacatgttcgtctgattgaacaagct
ggaattgataaacttgagttgtcggatgactatttgtacggaagggtcattggtaaagcc
attgttgatacagaaaccgaagaagtagtcgcacaggcaaacgaaaccatcacgccggat
ttgctgaggacattacgaactcgaaaaatctcgtcgttgcatacactgtatatcaacgaa
attgaatgcggatcctatatttccgacactttaagactagacaacaccgaaaaccaattg
gaagctctggctgaaatttatcgcatcatgcgaccgggtgagccgccaaccaaagaagcg
gccgaaagtttgttcgaaaatctgtttttctcgccagaacgttacgatttgtccgctgta
ggtcggatgaaattcaatcgtcgggttggaaggaaacagtcgacaggattgtggaccctg
tctaaagaagatattgtggatgtgttacgtgttcttgtcaaaattcgagatggtaaaggg
gatgtggacgatattgatcatttgggaaaccgtcgtatacgcagtgtaggcgaaatggtc
gaaaaccaatttcggattggtttggttcgtgtcgaaagagcggtaaaagacagattgaat
ctagcggatattgaaaatctagtacctcaagatttgataaatgcaaaacctgtatcggcg
gcaatcaaagaatttttcggttcgagccaattgtcacaatttatggatcaaaacaatccg
ttatccgaaataactcataaacgtcggatatccgctttaggtccgggggggttaacacga
gagagggcgggttttgaggtgagagatgtacatcccacgcactacgggagagtgtgtcct
atagagactccggaaggaccgaatattgggttaattaattcactagcggtatttgccaga
gcgaatgagtatggttttttagaaacgccttatagaaaagtactcgacgggacggttact
gataaaatcgaatatttatcggccattgaagaaggcgattattacattgcgcaagcaaac
accagtacagacgaaacaggccgcatggtggatgaattggtttcatgccgtcataaagga
gaattcacccttaccgtaccggacaaagtagattatatagatgtatcgccacgacaaatt
gtttccgttgccgctgccctaattccttttctagaacacgatgacgccaatcgggcttta
atgggttccaatatgcaacggcaagcagtgcctacgattagatcagaagcaccgctagta
ggaaccggaatggaacgaactgtagctgtagactctggagtcaccgtagttgctaaacga
gacggtattgtcgattctgttgatgcttcgcgtattgtggtccgtataaatgaaaatggc
ggagacgacatcggggttgatatttataatctgaccaaatttagcaggtccaatcaaaac
acctgtatcaatcaatatcccattgtagagattggagatcgtatacagaagggggatgta
ctggctgatggtccttctacagatcttggtgagctcgcattaggacaaaatttgttggtg
gcctttatgccttggaacggttacaattttgaagattccattctcatctccgaacgattg
gtcgaagaagatcgattcaccaccattcatatccaagagtttacttgcatcgctcgagac
actaaattgggtccagaagaaatcacagcagacattccaaatattggagaaagtgcgttg
gcaaaattggacgaatccggaattgtatatattggggccgaagtaggacctagtgatatt
ttagtgggtaaggtaactcctaaaggtgaaacgcaactcacaccggaggaaaaattgttg
cgggcgatttttggtgaaaaagcgtcggacgtaaaagatacgtctttacgagccactccc
ggaactattggaactgttatcgatgtacgtatttttactcgtgaaggtgtaaaaaaagac
aaacgcgctctggagatcgaaaaattggaactcgcaaacatagaaaaagatttaaacgat
cgatttcgcattcgtgagtatgccctatttcagaatgtgaaaaaatttcttatcaatcag
gtagcgttgtctgttgaatcgcctaaaaagcatacaacaatcggtagagattttttagaa
acactgcctcggaacagatggtttgaaattcaattgcgcgacggcagtgcagcaaagcgt
cttgaatccgcatacgaacgttataaaaaattgtgtaaaatgcgagacgaaaaactcaaa
gattttcaccaaaaactgacacaaggtggggatttggcaccgggagtcattaaaatagta
aaagtctacttagcggttaaacgccgcattcaacccggagacaaaatggcggggcgccat
ggaaataaaggcgttatttccaccatcgtccccatcgaagatatgccttatttgaaggac
gggacaccagtagatattgtactgaatcctttgggagttccttctcgaatgaatattggt
caagtactggagacccatttgggatgggccgcaaaaagcctaggtgcgaaaataggcgac
cttcttgaccaaaaacacaccgatttaaagcgattgcgcggacttcttaaatccatttac
gatttgagtaaagttcaaaagtttagtgtagaagatttgagcgacacagaaatcgtaatt
ttggctaacaatctaagaaaaggtgtacctgtgtcttcacctgttttcgatggtgctacg
gaagaggaaataaagcgtttgctagaaatggcaaatcttcccatttccggacaatcttgt
ttgtacgatggacgtaccggaaagaaatttgatcgagcggttactgtaggttatatgtat
atgctaaaactcaatcatttggttgacgataagatacacgctcgttctacaggttcttat
agtcttgtgacccagcaacctttaggaggaaaagctcaattcggaggacaacggtttgga
gaaatggaagtttgggcgctagaagcctatggagcggcttataccctgcaagaaatgttg
actgtgaaatccgatgatgttgtgggccgtacccgtatgtacaaaaatatcgtcgacggc
gatcatcgaatggatgccggtatgccggaatctttcaacgttttgatcaaagaaattcgt
tcgctggctattgatattgatttggaaaacgactga
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