Canis lupus familiaris (dog): 477100
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Entry
477100 CDS
T01007
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X4
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03008
Ribosome biogenesis in eukaryotes
cfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
477100 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
477100 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
477100 (XRN1)
03009 Ribosome biogenesis [BR:
cfa03009
]
477100 (XRN1)
03016 Transfer RNA biogenesis [BR:
cfa03016
]
477100 (XRN1)
03036 Chromosome and associated proteins [BR:
cfa03036
]
477100 (XRN1)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
477100 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
477100 (XRN1)
Ribosome biogenesis [BR:
cfa03009
]
Eukaryotic type
Pre-60S particles
RNases
477100 (XRN1)
Transfer RNA biogenesis [BR:
cfa03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
477100 (XRN1)
Chromosome and associated proteins [BR:
cfa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
477100 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
Motif
Other DBs
NCBI-GeneID:
477100
NCBI-ProteinID:
XP_038312964
Ensembl:
ENSCAFG00000007783
VGNC:
48471
LinkDB
All DBs
Position
23:complement(38020211..38058721)
Genome browser
AA seq
709 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEARNYKEKKKSKGQENAICWAALDKNGEEVVTSKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQVPPNDPIKI
HGIGWDHYGSNLALGAANIMPSSSHLFGSMPWGPPVPVPGKPFHHTSYSGTMPMAGGMPG
GVHNQFIPLQVTKKRVANKKNFESKEAQCSATPLQTSQPGSSNVTKVIPQESSSASLKSS
QITQPASSFQVEAASQGHNVSHHKSTPSSSSRRKSRKLAVNFGVSKPSE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcggtatccctgcctcagtgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctggatatgaatggaatcata
catcagtgttcccatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactacttggaggtgttatttcgcattattaaacctaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgggggagg
cgttttaggtcggcaaaggaagcggaagacaaaataaaaaaagcattagaaaaaggagaa
actcttcctacagaggccagatttgattccaactgcattacaccagggactgaattcatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttctacagataagtcg
tggcaaggagttaccatctacttctcaggccatgagactcccggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacat
tgtctttatggtttagatgctgacttgattatgcttggattgacaagtcacgagacacat
ttctctcttttaagagaagaggttcggtttggtggcaaaaaaacacaaagggtatgcgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagagtatattgactat
gagttttcagaattgaaagccaagatcacttttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttggtggttatattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaaactatcagactttgatcgggaacacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgtagcagcagaagaa
gccaggaactacaaggaaaagaagaagtcaaagggccaggaaaatgccatatgttgggct
gctttagacaaaaatggagaagaagtggtaacttctaaggataatttagaagatgagact
gaagatgatgacctgtttgaaactgagtttagacaatataaaagaacatactacatgacg
aagatgggagttgatgtagtatctgacgactttctggctgatcaagctgcatgttatgtt
caggcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtat
tatccctaccattatgcacctttcctatctgatatccgcaacatcagtacactcaaaatc
cattttgagctaggaaaaccttttaagccatttgaacagcttcttgctgtacttccagca
gctagcaaaaatttacttcctacatgctaccaggtgccccccaatgacccaattaaaatt
catggtataggctgggatcactatggaagcaacttagcattgggggcagctaatataatg
ccttcatcatctcacctctttggctccatgccatggggaccaccagtgccagttcctgga
aaaccctttcatcatacttcatattctgggaccatgcccatggctgggggaatgccaggt
ggtgtgcacaatcaattcatacctctacaggttactaagaaaagggttgcaaataaaaag
aactttgagagtaaggaggcccagtgttctgctaccccacttcagactagccagccaggg
tcttccaatgtcaccaaagtgattccacaggagagttcatcagcttccttaaagtcctct
cagattactcagcctgcatcttcttttcaagttgaagctgcctcccaaggccataatgtg
tctcaccacaagtcaacaccaagctcttcttcaagaagaaaatcaagaaaactggctgtc
aattttggcgtttctaaaccttctgaataa
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