Citrobacter farmeri: CI104_20315
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Entry
CI104_20315 CDS
T05012
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cfar
Citrobacter farmeri
Pathway
cfar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CI104_20315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfar03400
]
CI104_20315
Enzymes [BR:
cfar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CI104_20315
DNA repair and recombination proteins [BR:
cfar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CI104_20315
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AST81261
UniProt:
A0ACA8DAX0
LinkDB
All DBs
Position
complement(4080140..4083685)
Genome browser
AA seq
1181 aa
AA seq
DB search
MNDVAESLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSSAFPRPLTVEELL
VVTFTEAATEELRGRIRNNIHELRIACLRESTENPLYARLLDEIDDKKQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA
QVVFETWKGPQALLADINRYLQGEAPVIKAPPPDDETLASRHQQIVQRINALKQQWCEAV
DELDGLMEASGIDRRKFNRGNQGKWIEKISAWAQSGTQSYQLPEALEKFSQRFLEERTKE
GGAVPQHPLFVAIDELLSEPLTLRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDD
ALRSESGDALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWRHQPDTALLLIGDPKQAIY
AFRGADIFTYMKARGEVNAHYTLDTNWRSAPGMVNSVNRLFSQMDDAFMFREIPFQPVKY
ADKNQSLRFEFHGETQPAMTMWLMEGESCGIGDYQSYMAQVCAVQIRDWLKAGLSGEAIL
ISGQDVRPVSAADISVLVRSRQEAALVRDALTHLAIPSVYLSNRDSVFETLEAQEMLWVL
QAVMAPEKENTLRSALATSMMGLNARDIDMLNNNENAWDEVVEEFVGYRQIWQKRGVMPM
LRALMSARQIAENLLATAGGERRLTDILHISELLQEAASQLESEHALVRWLSQHILEPDS
NASSQQMRLESDNHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQAFYHDRNTFEAVLDL
SEADESVALAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPMDAAGLRAAIETVCDENIVCRIPEAASMEPLPDAVALEASLNARQVQRIPGDS
WRVTSYSGLQQRGHGIAQDLMPRLDIDATGVGEVVEEPELTPHQFPRGASPGTFLHSLFE
DLDFTQPVEADWVQEKLALGGYDVCWEPVITAWVTSILHAPLNESGISLSQLSAREKQVE
MEFYLPISQPLIAERLDALIRQFDPLSAGCPPLEFTQVRGMLKGFIDLVFRHNGRYYLLD
YKSNWLGENSSAYTPEAMARAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIY
LFLRGVDSEQPQQGIYTTRPSEELIARMDEMFAGVALEDAS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgtcgccgagtcccttgatcccctgcgcttgcccctcacgggcgagcgcctg
attgaagcctctgcgggcaccggcaaaacctttactatcgcggcgctctatctgcgtctg
ctcctggggcttggcggttcctccgcctttccccgtcccctgaccgttgaagaactgctg
gtggtgacctttaccgaggcagccactgaagagttgcgcggtcgtattcgtaataatatt
catgagttgcggatcgcctgtctgcgcgaatcgaccgaaaatcccctttatgcccgtctg
ctggatgagatcgacgataaaaaacaggcggctcagtggctgctgctcgccgagaggcag
atggatgaggcggcggtgttcaccatccacggtttttgtcagcgcatgctgagtctcaat
gccttcgaatctggcatgctgtttgagcaacaactgattgaagatgaatcattgttgcgc
taccaggcctgtgcggatttctggcgtcgtcactgttaccccttgccgcgtgaaattgct
caggtggtatttgaaacgtggaaaggaccgcaggcgctgctggcagatatcaaccgctac
ctgcaaggggaagcgccggtcatcaaggcgccgccgccggatgacgaaacgctggcgtcc
cgtcatcaacagatcgtgcagcgaatcaacgcgcttaaacagcagtggtgtgaagcggtg
gatgagcttgacggattgatggaagcctcaggcattgaccggcgtaaatttaaccgtggc
aaccagggaaagtggatcgagaagatcagcgcctgggcccagtccgggacgcaaagttac
cagttgccagaggctctcgagaaattctcgcagcgttttcttgaggaacgcaccaaagaa
ggcggcgcggtgccgcagcatccgctgtttgtcgcaattgatgaattgctgtcggaacct
ctgacactcagagatttggtgatcactcgtgcgctggcggagatccgtgagacggtggcg
agagaaaaacgtcgtcggggtgagctgggatttgacgatatgctcagccgactggatgac
gcgctgcgcagtgaaagcggcgatgcgctggcggcggcgattcgaacccgtttcccggtg
gcgatgatcgatgagttccaggacaccgatccgcagcaataccgcattttccgtcgcatc
tggcgtcatcagccagataccgcgctgttgttgataggcgacccgaagcaggcgatttat
gcgtttcgcggcgcggatatttttacctatatgaaggctcggggtgaggtcaacgcgcac
tataccctcgacaccaactggcgttccgcgccgggtatggtgaacagcgtcaacaggctg
ttcagccagatggacgatgccttcatgttccgggagatcccgttccagccggtgaaatac
gccgataaaaatcagtcgctacgttttgaatttcatggcgaaactcaacccgcgatgacg
atgtggctaatggaaggggaaagctgcggaataggggattatcaaagttatatggcgcag
gtgtgcgccgtgcagatacgcgactggctgaaggccggcttaagcggtgaggcaatactt
atcagcggtcaggatgtgcgtccggtgagtgcggcggatatcagtgtgctggtgcgtagc
cgacaggaagcggcgctggtgcgtgatgctctgacgcacctggcgattccttccgtctat
ctttccaaccgcgacagcgtgtttgaaacgctggaagcgcaggagatgctctgggtttta
caggcggtgatggcgccagaaaaggaaaatacgctacgtagcgcgctggcgacctcaatg
atggggttgaacgcacgcgacattgacatgctcaacaacaatgaaaatgcctgggatgag
gtggtcgaagaatttgtcggctatcgtcagatctggcagaaacggggcgtgatgccgatg
ctgcgcgcgctgatgtccgcgcgacagattgcggaaaatctgctggcgacggcgggggga
gagcgtcgcctgaccgatattttgcacatcagcgaactgttgcaggaggccgcttcgcaa
ctggaaagcgagcatgcgctggtgcgctggctttcgcagcatattcttgagcctgacagc
aacgcttccagccagcaaatgcgtctggaaagcgacaaccatctggtacagatcgtcact
atccacaagtcaaaagggctggagtatccgctggtctggctgccgtttatcacgaatttc
cgcgtacaggaacaggcgttttatcatgaccgtaacacatttgaagcggtactggatctg
agcgaagcggacgaaagcgtggcactggcagaagccgaacgactggcggaggatctgcgt
ttactgtacgtggcgctgacccgttcagtctggcactgcagtttgggcgtcgctcctctg
gttcgtcgtcggggcgataaaaagggcgataccgatgtgcatcagagcgcgctggggcgt
ctgctgcaaaagggcgaaccaatggatgccgccgggctacgcgcggcgatcgagaccgtt
tgcgatgagaacatcgtctgtcgtatcccggaagcggccagcatggagccgttgcctgac
gccgttgcgctcgaagcgtcgctgaatgcccgacaggtacaaagaataccgggcgacagt
tggcgggtgaccagttattccggcctgcaacagcgtggtcacggtattgcacaggatctc
atgccgcgactggacatcgatgcgacaggcgtcggtgaggtcgttgaggagccggaactg
acgccgcatcagtttccacgcggtgcgtcgccggggacgtttttacacagcctgtttgaa
gatctcgattttacccagccagtagaggctgactgggtgcaggaaaaactggcgcttggg
ggttacgatgtctgctgggaaccggttatcaccgcatgggtgacctccattcttcatgct
ccgctcaatgagagcggcattagcctgagccagctttccgcgcgggaaaaacaggtcgag
atggagttttatctgccaattagccagccgcttattgcagagaggctggatgcgctgatc
cgccagtttgacccactctcggcgggctgtccgccgctggagttcacccaggttcgcggg
atgctgaagggctttatcgatctggtgtttcgtcacaacgggcgctattacctgctggat
tacaaatcgaactggctgggtgaaaacagctcggcttacaccccagaggcgatggcgagg
gcaatgcaggcgcatcgctacgatttacagtatcagctctataccctcgcgctgcaccgg
tatttgcgccatcgcatcgcggattacgactacgagcgccattttggtggcgtgatttat
ctgttcctgcgtggtgtggacagcgagcagccgcagcaggggatttacaccacccgcccg
tcggaggagctgattgcccgaatggacgagatgtttgccggggtggcactggaggacgca
tcgtga
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integrated database retrieval system
