Clostridium felsineum DSM 794: CLFE_007790
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Entry
CLFE_007790 CDS
T08216
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLFE_007790 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfb03021
]
CLFE_007790 (rpoB)
03400 DNA repair and recombination proteins [BR:
cfb03400
]
CLFE_007790 (rpoB)
Enzymes [BR:
cfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLFE_007790 (rpoB)
Transcription machinery [BR:
cfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLFE_007790 (rpoB)
DNA repair and recombination proteins [BR:
cfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLFE_007790 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
URZ14766
LinkDB
All DBs
Position
825912..829640
Genome browser
AA seq
1242 aa
AA seq
DB search
MIHPVQVGKRTRMSFAKLNEIGVMPNLIEVQLDSYQWFLDNGLQEIFDDINPIQDYTGNL
ILEFIGYKLDMDNIKYSVEECKERDTTYAAPLKVKVRLLNKETGEVKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGAYYDYTVDKNGKKLFSATVIPNRGAWLEYETDSNSVI
HVRIDKTRKLPITILVRAMGFGSDAEIVNYFGEEERLKATIEKDNTKTREEALLEIYKRL
RPGEPPTVDSAFSLINSLFFDAKRYDLSRVGRYKFNKKLAVSIRIANKTAAKDIVNPETG
EIIVEKGQRISKEKALEVQNAGINSVDILVDDNTIRVIGNNFVDIKSYIKFDISDLNIKE
LVYYPVLKEILDNYTDEEAIKEELKKNVHKLVPKHIIKDDMFATVSYELGLAYGIGNVDD
IDHLGNRRVRSVGELLQNQFRIGLSRMERVVKERMTIQDQEVITPQALINIRPVAASIKE
FFGSSQLSQFMDQINPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATYARVNEYGFVETPYRIVDKEAGRVTDEIHYFTADEEDRCLIARANEQ
IDENGYFIDKKITVRLPDEVLVVPANEVDLMDVSARQLVSVATAMIPFLENDDASRALMG
SNMQRQAVPLLKPQAPVVGTGIEHKAAVDSGILPKARNAGTVEYVSANEVRVRRDSDGGI
DTYRLLKFKRSNQGTCINQRPIVEKGEKVEKGAVLSDGQSTDLGEIALGRNIRMGFITWE
GYNYEDAMLISEQLVRDDVFTSIHIEEYEAEARDTKLGPEEITRDIPNVGEDALKDIDER
GIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGII
VDVKIFTRENGDELPPGVNELVRCYIAQKRKISVGDKMSGRHGNKGVISRVLPEEDMPFL
PDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAAANLGWHIATPVFDGALEPEIVECLKRA
GYDADGKTALYDGRTGEAFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGIPEA
FKVLIKELQALCLDVKVLSDENTEIEIKESIEDETEELDVNIEGNEDSNKAEQTKPQDVE
ENVSSNETDAAYESEEIDIDYEDLDIDDLKNGLGLEDFNDEH
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgatacatcctgtccaagttggtaaaagaactagaatgagttttgctaaactcaatgaa
attggcgttatgcctaatcttattgaggtgcagttggattcataccaatggtttttagac
aatgggcttcaagagatatttgatgacattaatccaattcaagattatacaggaaatctt
atactagaatttattggttacaagctcgatatggataatatcaaatattccgttgaggaa
tgtaaagaaagagacaccacttatgcggcaccacttaaggttaaagtaagattacttaat
aaagaaactggtgaagtaaaagaacaagaagtatttatgggtgattttcctttaatgaca
gaacagggaacatttataataaatggtgcagaaagagttattgtaagtcagcttgttaga
tcaccaggagcttattatgattacacagtagacaaaaatggtaaaaaattattttcagca
acagtcattcctaataggggggcgtggttagaatatgaaacagattcaaacagcgttatt
catgttagaattgacaaaacaagaaagttgccaattactatacttgtaagggcaatggga
tttggttctgatgctgaaatagttaattactttggagaagaagaaagacttaaggctact
atagagaaagataatactaaaactagagaagaagctcttctagaaatatataagagactt
agaccaggtgaaccaccaacagttgatagtgcattttctcttataaattccttatttttt
gatgccaaaagatatgatttgtccagagttggaagatacaagttcaataagaaattggcg
gttagcataagaatagccaataaaacagctgcaaaggatattgtaaatcctgaaacaggt
gaaattattgtagaaaaaggtcaaagaataagtaaagaaaaagcattagaagttcaaaat
gcaggcataaattcagttgatattttagttgatgacaatactatacgagttataggtaat
aattttgttgatataaaaagttacataaagtttgacataagtgatttaaatattaaagaa
ttagtatattatcctgttcttaaagaaattttggataattacacagacgaagaagctata
aaagaggaacttaagaaaaatgttcataaattggttccaaagcatattattaaagatgat
atgtttgcaactgtaagctatgagttaggattggcttatggaattggtaatgtagatgat
atagatcatcttggaaatagaagagttagatcagttggcgaattactacaaaaccaattt
agaattggtctttcaagaatggaaagagtagttaaagagagaatgactatacaagaccaa
gaagttattactccacaagctcttataaacataagacctgtagctgcgtctattaaagaa
ttctttggaagttcacagctttctcaattcatggatcaaataaatccattatcagaactt
acacataaaagaagattatcagccttaggaccaggaggtctttcaagagaaagagctggt
tttgaagtaagagacgttcatcactcacactatggaagaatgtgccctatagaaacgcca
gaaggacctaatataggtcttataaactcgcttgcaacatatgcaagagtgaatgagtat
ggctttgtagaaacaccttatagaatagtggataaagaagctggaagagttactgatgaa
attcattactttacagcagatgaagaagatagatgcttaatagcaagagcaaatgagcaa
atagatgaaaatggatattttatagataaaaagataaccgtaagacttccagatgaagtc
ttagtggtaccagctaatgaagttgatttaatggatgtttctgcaagacaattggtatct
gtagcaacggcaatgattccattccttgaaaatgatgatgccagtcgtgcacttatggga
tcaaacatgcaacgtcaagctgttccacttttaaaacctcaagctccagttgttggtact
ggtatagaacataaggctgctgtagattctggtattttaccaaaagctagaaatgcagga
actgtagaatatgtgagcgccaatgaagtaagagtaagaagagacagtgatggtggaata
gacacatatagacttcttaagtttaagagatcaaaccagggtacgtgtataaaccaaaga
cctattgttgaaaaaggtgaaaaagttgaaaagggagctgttttatcagatggccagtca
actgacttaggtgaaattgcacttggtagaaatatcagaatgggtttcataacttgggaa
ggatataactacgaagatgctatgcttatatcagagcaacttgtacgtgacgatgtgttt
acatctattcatatagaagaatatgaagcagaagctagagatacaaaattaggaccagaa
gaaataactagagatataccaaacgttggtgaagatgcacttaaggatatagacgaaaga
ggaataataagaataggtgctgaagttagatcaggtgatattcttgttggaaaggttact
ccaaaaggagaaactgaacttacagcagaggaaagactcttaagagcaatatttggtgaa
aaagcaagggaagtaagggatacatctcttagagttccacatggagaagctggaataata
gttgatgtaaaaatattcactagggaaaatggtgatgaattaccacctggtgtaaatgaa
cttgtaagatgttatattgcacaaaaaagaaaaatttctgttggagataagatgtcagga
agacatggtaataagggtgttatttctagagtgctaccagaagaagatatgcctttctta
ccagatggaagacctcttcaaatatgtcttaacccactaggagttccttctcgtatgaat
ataggtcaggttttagaggttcatcttggttgggcagcagctaacttaggatggcatatt
gctacaccagtatttgatggagctttagagccagaaatagttgaatgtcttaagagagca
ggatatgatgcagatggaaagactgctttatatgatggaagaacaggagaagcttttgat
aatagggttacagtaggatatatgtatatacttaaactagcccatctagtagatgataaa
atccatgctagatcaactggtccttattcattagtaacgcaacaaccattgggtggtaaa
gctcaatttggtggtcagagatttggagaaatggaagtttgggcacttgaagcttatggt
gctgcacatacactacaagaaatactcacagtgaaatctgacgatgttgttggaagagtt
aaaacctatgaagctatagttaagggtgaaaatatccctgaaccaggaataccagaagca
tttaaagttcttataaaagaactacaagcattatgtcttgatgttaaagtattatctgat
gagaatacagaaatagaaataaaagagtcaattgaagatgaaacagaggaattagacgtt
aatatagagggcaatgaagattccaacaaagccgagcaaacaaaaccgcaagatgttgaa
gaaaatgttagtagtaatgaaacggatgcggcatacgagagtgaagagatagatatcgac
tatgaagatttagatatagacgatcttaaaaatggattagggcttgaagatttcaatgat
gaacattaa
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