Caproicibacter fermentans: HCR03_03005
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Entry
HCR03_03005 CDS
T07651
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cfem
Caproicibacter fermentans
Pathway
cfem03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfem00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCR03_03005 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfem03021
]
HCR03_03005 (rpoB)
03400 DNA repair and recombination proteins [BR:
cfem03400
]
HCR03_03005 (rpoB)
Enzymes [BR:
cfem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCR03_03005 (rpoB)
Transcription machinery [BR:
cfem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCR03_03005 (rpoB)
DNA repair and recombination proteins [BR:
cfem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCR03_03005 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QNK41286
UniProt:
A0A6N8I4R1
LinkDB
All DBs
Position
complement(614483..618229)
Genome browser
AA seq
1248 aa
AA seq
DB search
MVNVKPVKVGKNTRMSFARIDEVLDMPNLIEVQKKSYQWFLDEGLKEVFKEVSGITDYTG
NLVLDFVDYKLDVDKPNYSVEECKERDATYSAALRVTARLLNKESGEIKESEVFMGDFPL
MTDSGTFVINGAERVIVSQLVRSPGVYYKMEYDKTGKELYSSTVIPNRGAWLEYENDAND
VFYVRIDKNRKIPVTVFIRSLGLGSDEEIRDYFGVDERIEATIAKDPCKNTEEALFEIYR
KLRPSEPPTIESAQAHINSLFFDARRYDLSRVGRYKYNKKLNLAGRISGQVLSKPIADPR
TGELLAEAGVAVSHELAEQIDDAGVSIAYVQDGDREIKVISNGMVNIQKFVNFDAKTECD
INERVRFTILNEILESSSTDEEIKEKVIARIDELIPKHIIIDDIFASINYMNCLAVGLGT
IDDIDHLGNRRIRSVGELLQNQFRIGFSRLERVIRERMTLQAQDLEVLTPHSLINIRPVV
AAIREFFGSSPLSQFMDQTNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRMC
PIETPEGPNIGLISYLATFAKINDYGFIEAPFRRVDKKTGVVTKEVVYMTADVEDNYIVA
QANEPLDEEGRFVNPKVNGRYRDEFVEIERERADFMDVSPRMVVSVATAMIPFLENDDAN
RALMGSNMQRQAVPLLKTESPIVGTGMEYKAGVDSGVCVLAKRSGVVSSVSADEIKITTD
NGETDVYHVIKFMRSNQGTCINQVPIVDINQRVAEGDVIADGPATKDGEISLGKNALIGF
MTWEGYNYEDAVLINEKVVRDDVFTSIHIEEYETEARDTKLGPEEITRDIPNVNEDLLRD
LDDGGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGE
SGIVVDVKVFTRENSHDELSPGVNKVVRCYLAQKRKISVGDKMAGRHGNKGVVSRILPVE
DMPFLPDGTPLDIVLNPLGVPSRMNIGQVLEVHLGLAAKALGWKIMTPVFDGAHEDNIVE
CLTQAGLSPDGKILLKDGRTGEYFDNPVTVGYMYYLKLHHLVDDKIHARSTGPYSLVTQQ
PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGQNIPTP
GIPESFKVLIKELQSLALDVKVLDVNNDEIDLKQNFDDDDDIGFNPSEENFDEPTVAEGD
FEGFSMEEAEDDGSLFDDSDGFTDEGSGDSEDLGKDDLFDMSSDEDKI
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgtcaaaccggttaaggttggcaaaaatactcgaatgagttttgcgcgtatt
gatgaagtccttgatatgccgaatcttatcgaagtacagaaaaagtcctatcagtggttc
ctcgatgaaggactcaaggaagtattcaaggaagtctccggcatcacggattacacgggc
aatctcgtacttgattttgtcgattacaaactggatgtcgacaagccgaattacagcgtg
gaagaatgcaaggaacgcgatgctacttattccgcggcattacgggtcacggcacggctg
cttaacaaggaaagcggcgaaattaaagaatccgaagtattcatgggggattttcccctg
atgaccgacagcggaacctttgtaatcaacggcgctgagcgcgtcattgtttcccagctg
gttcgttcgcccggcgtttattataaaatggaatacgataaaacgggcaaggaactttac
agctccaccgttatcccgaaccgcggcgcatggctggaatatgaaaacgacgcgaacgac
gttttctatgttcgtattgataaaaaccgcaaaattcccgttaccgtatttatccgctcc
ctcggtcttggttcggacgaggaaatccgcgattattttggcgtcgacgagcggatagaa
gcaacgattgccaaagatccgtgcaaaaacacggaggaagccctgtttgaaatttacaga
aagcttcgtccgagcgaaccgccgaccatagaaagcgcgcaggctcacatcaacagcctg
ttttttgatgcgcgccgttatgacctttcgcgggtcggccgttacaaatacaacaaaaag
ctgaatcttgccggccgtatctccggtcaggtgctttccaagccgatcgcggatccccgc
acgggggaactgcttgcggaggcgggtgtggccgtgtcccatgagcttgcggaacagatt
gacgatgccggtgtctccatcgcgtatgtgcaggatggggaccgcgaaatcaaagtgatt
tccaacggcatggttaatattcagaaattcgtaaactttgacgccaaaacagaatgcgat
atcaacgagagggtccgtttcaccattctcaatgaaattcttgagtccagttccacggat
gaagaaatcaaggaaaaagtcatcgccagaatcgacgagctgattccaaagcacattatt
atcgatgacatttttgcctctatcaattatatgaattgcctggcggttggcctgggtacg
attgacgatatcgaccatttgggcaacaggcgaatccggtctgtcggcgagctgctccag
aaccagtttcgcatcggcttttcccgcctggaacgagtgattcgtgaacgcatgacgctt
caggcccaggatctggaggttcttacaccgcattctttaatcaatatccgccctgtggtt
gcggcaatccgtgaatttttcggatcttctccgctgtctcagtttatggatcagaccaat
ccgcttgcggagcttacccataagagacgtctttccgcgctggggcccggcggtctttca
agagatcgcgcgggatttgaggtacgcgacgttcattacacacactatggacgcatgtgc
ccgattgaaacgccggaagggccgaatatcggtttgatctcctatttggccacattcgcg
aaaatcaatgattacggatttatcgaagcgccgtttcgccgcgttgacaaaaaaaccggt
gttgtaacaaaagaagtcgtctatatgacggcggatgttgaagacaattatattgtggca
caggcgaatgaacctctcgatgaagaaggccgcttcgtaaacccgaaggtaaacggccgc
tatcgcgacgaatttgttgaaatagagcgcgaacgcgctgatttcatggatgtttcgccg
cggatggttgtttccgtcgcgaccgcgatgattccctttctggaaaacgacgatgcgaac
cgcgcgctgatgggttccaacatgcagcggcaggcggtaccgcttttgaagacggaatct
ccgattgtcggtaccggcatggagtataaagcgggcgtggattccggtgtctgtgtgctt
gcaaagcgcagcggcgtcgtcagcagcgtttccgccgacgaaattaagattactacggac
aacggggaaaccgacgtctatcatgttattaaatttatgcgttccaatcagggaacatgc
attaatcaggtcccgatagtagacattaaccagcgcgtggcggagggagacgtcatcgca
gacggcccggccacaaaggacggggaaatcagccttggcaaaaacgccctgatcggcttc
atgacctgggagggctacaactacgaggacgccgtcctgatcaatgaaaaagttgtgcgc
gacgatgtttttacctctatccacattgaggaatatgagacggaagcccgcgacaccaaa
cttggtccggaagaaattacacgggatattccgaatgtcaacgaagacctgctccgtgat
ttggacgacggcggaatcatccgcatcggcgcggaagtccgtgcgggagatattcttgtc
ggtaaggtaacgccaaagggcgaaaccgagctgaccgcggaagagcgtctgcttcgtgcc
atttttggagaaaaagcacgcgaggttcgcgatacctcccttcgcgttccgcacggtgaa
agcggcattgttgtcgacgttaaggtcttcacccgtgaaaacagccatgacgagctgagc
ccgggcgtcaataaagtggttcgctgctatctggcgcagaagagaaaaatatcagtcggc
gataaaatggcgggccgccacggaaacaagggcgttgtctcgcgcattctgccggtggaa
gatatgccgttccttccggacgggactccgcttgacattgtgctgaatcctctgggcgta
ccctcccgaatgaatatcgggcaggtgctggaagttcacctgggtcttgccgcaaaagca
cttggctggaaaattatgactcctgtcttcgacggtgctcacgaagacaatattgtggag
tgcctgacgcaggcgggactgagccccgacggaaagatccttttgaaagacggccgcacc
ggggagtattttgacaaccccgttaccgtcggttatatgtattatctgaaactccaccac
ctggtagacgataaaatccatgcccgttccaccggcccgtattcccttgttacgcagcag
cctctgggcggcaaagcacagttcggcggacagcgctttggcgaaatggaggtgtgggcg
cttgaggcttacggcgccgcctatacgcttcaggaaattctcaccgtcaagtccgacgac
gtggtcggacgcgtgaagacgtatgaagcaattgtcaaaggtcagaatattccgacgccc
ggaattccggaatcgtttaaggttttgatcaaagaactccagtccctcgcgctcgacgtc
aaggtactggatgtaaataatgatgaaatagacctgaagcagaattttgacgacgacgac
gatattggattcaatccttcggaagaaaactttgatgaaccgacggtcgctgagggcgac
tttgaaggcttctccatggaagaagcggaggatgacggaagtctgtttgatgattccgat
ggttttactgacgaaggttccggcgattccgaagatcttgggaaagacgatctgttcgat
atgagttccgatgaagataaaatttga
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