Caproicibacter fermentans: HCR03_12075
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Entry
HCR03_12075 CDS
T07651
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
cfem
Caproicibacter fermentans
Brite
KEGG Orthology (KO) [BR:
cfem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfem03032
]
HCR03_12075 (gyrB)
03400 DNA repair and recombination proteins [BR:
cfem03400
]
HCR03_12075 (gyrB)
Enzymes [BR:
cfem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HCR03_12075 (gyrB)
DNA replication proteins [BR:
cfem03032
]
Prokaryotic type
DNA Topoisomerases
HCR03_12075 (gyrB)
DNA repair and recombination proteins [BR:
cfem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HCR03_12075 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
TOPRIM_C
Motif
Other DBs
NCBI-ProteinID:
QNK39485
UniProt:
A0A6N8HZJ0
LinkDB
All DBs
Position
complement(2441289..2443229)
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AA seq
646 aa
AA seq
DB search
MEFGNVTQTNSEYDESEIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEIVDNAIDEALA
GCCDKIEVALEPGDIIRVTDNGRGIPVGIHHQVGIPTVTVVYTMLHAGGKFGGGGYKVSG
GLHGVGASVVNALSQWLEVEVFKDGVVYFQRFERGKPVTGLEQRGETERTGTRVRFQADP
EIFKETTSYDYETLQTRLREQAFLNAGVRILLEDGRDPETHRLDDFRFEGGIKSFVEYIN
KKKAVEVIHPDVIYFSGVAPDDSATAEVAMQYNDSYNELMLSFANDIHTTDGGTHEDGFR
RALTRVMNDYGRKFNILKESDKNLSGDDFREGLTVIISVKLREAQFEGQTKARLGNTEIG
TLVNSMISEKLSVYLEENPAVSRAIFDKAMAASHAREAARKARDMVRRKSALENASLPGK
LADCQSRNSEETEIYIVEGDSAGGSAKGGRDRRYQAILPLWGKMLNVEKARLDKVYGNEK
LMPVVTALGCGIGEEFDLNKLRYGKIIIMADADVDGSHIRTLLLTFFFRFMKPLVEEGHV
YLAQPPLYRLTKSKKHYYAYTDKERDRLMQDFVSGYEIQRYKGLGEMDPEQLWETTMNPE
TRMMLRVEVEDAAAADEAFTVLMGDKVEPRREFIEQNAKYVQNLDV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
ttggagtttggcaatgtcacacagacgaacagcgaatacgacgaaagtgaaatacaggtt
ctggaaggacttgaagccgttcggaagcgccccggcatgtacatcggttccaccggtccg
cgcgggctgcaccacctggtgtatgagattgtggacaacgcgatcgacgaggcccttgcc
ggctgctgcgataaaatcgaggtcgcgctcgaaccgggcgatattatccgcgtcaccgac
aacgggcgaggaattccggtcggaatccaccaccaggtgggaatcccgacagtcacggtc
gtttacaccatgctgcacgcgggcggaaaattcggcggcggcggatacaaggtttccggc
ggcctgcacggcgtgggcgcaagcgtggtcaacgcgctttcccagtggctggaggtcgag
gttttcaaagacggcgtcgtctattttcagcgttttgagcgcggcaagccggtaaccggg
ctggaacagcgcggagagaccgaacgcaccggtacgcgcgtgcgctttcaggcggaccct
gaaatttttaaggagaccacatcttacgattacgaaacgctgcagacgcggctgcgcgag
caggcgtttctgaacgcgggcgtccggattcttctggaggacggaagggacccggaaaca
caccggctggacgatttccgctttgagggcggcattaaaagctttgttgagtacatcaac
aaaaagaaagccgttgaggtcattcatccggacgtcatctatttttcgggggtcgcgccg
gacgattccgccacggcggaggtcgccatgcagtacaacgactcttacaacgagctgatg
ctgtcgttcgcgaacgacatccacacgaccgacggcggcacgcatgaggacgggttccgc
cgcgcgctgacccgcgtgatgaacgattacgggcggaaattcaacattctgaaggaaagc
gacaaaaacctttccggcgacgatttccgcgagggcctgaccgtcatcatcagcgtcaag
ctgcgggaggcccagtttgagggccagaccaaggcgaggctcggcaataccgaaatcggc
accctggtcaattccatgatttccgaaaagctttcggtttatctggaagaaaacccggcg
gtctcccgcgcaattttcgacaaggcgatggcggcttcccacgcaagggaggcggcgcgg
aaagcgcgcgacatggtccgcagaaaatcggcgctggaaaacgcctcgttacccggaaag
ctggcggactgccagagccggaactccgaggaaaccgagatctatatcgtcgagggcgat
tcggccggcggctccgcaaaaggcgggcgcgaccgccgctaccaggcgattctgccgctc
tggggcaagatgctgaacgtggaaaaggcaaggctcgacaaggtttacggcaacgaaaag
ctgatgccggtcgtcaccgcgctcggctgcggaatcggcgaagaattcgatttgaataag
ctgcgctacggcaaaatcatcatcatggcggatgccgacgtcgacggctcgcatatccgc
acgctgcttttgacctttttcttccgctttatgaagccgcttgtggaagaggggcatgtt
tacctcgcgcagcctcccctttaccggctgaccaagtccaaaaaacactattacgcctac
accgacaaggaacgcgacaggctgatgcaggactttgtttccggttatgaaattcagcgg
tacaagggccttggcgagatggaccccgagcagctatgggaaaccaccatgaatccggaa
acccggatgatgctgcgcgtggaagtcgaggacgcggcggcggccgacgaggcgttcacc
gttctgatgggcgacaaggtggagccgcgccgggaatttattgagcagaacgcgaaatac
gttcagaatctggacgtttaa
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