Colletotrichum fioriniae: CFIO01_06560
Help
Entry
CFIO01_06560 CDS
T04796
Name
(GenBank) 3' exoribonuclease family protein
KO
K12589
exosome complex component RRP42
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFIO01_06560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfj03019
]
CFIO01_06560
Messenger RNA biogenesis [BR:
cfj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CFIO01_06560
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CFIO01_06560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
EXF80959
UniProt:
A0A010RSD5
LinkDB
All DBs
AA seq
367 aa
AA seq
DB search
MASAQQVLLSPAELAYLHTTLSLTPPIRPDGRKANQFRPLTAETGILPGTNGSARICFSD
GTEAIVGVKAEIEKTASPFGADIDAEEASETRKDAGKKEEVKGNNDWLEITVEIPASRED
DAATVFLANMLSEALLADGEFTKKLRINSRFHWKLYLDILLISPPLSYPLPLLSLTTHLS
LLATRLPRLKSEGDEDPMFDDDWQASTFLYPRDGSAPVDGGSRPPITLLVIAVGGNVIFD
PAREELAVAESALAVSVAEEKTAASAGGMDVDGRQLKLLSVRTVDPPSRLTAPGVPNSVN
PATGLAGTPLKAPTAPAAAQGQAAEGVWKPPIGGTKVHVIEGMISKVLEKGGVADEVLEA
IAAVELA
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgcacagcaggttctgctctccccggcagagctcgcctacctccacacaacc
ctctccctcacgccgcccatccgcccagatggccgcaaggcaaaccagttccgccctctg
accgcagagacgggcatccttcccggcaccaacggcagcgcgcgcatctgcttctccgac
ggcacggaggccatcgtaggcgtcaaggcggagatcgagaagacggccagcccgtttggc
gcagacatagacgccgaggaggcttcagagacgaggaaagacgcgggtaagaaggaggag
gtcaagggcaacaatgactggctcgagataacggtcgagatcccggcctccagggaggat
gacgccgcgaccgttttccttgccaacatgctcagcgaagcgctgctcgccgacggggag
ttcaccaagaagctgcggattaacagccggttccactggaagctctacctagacatcctc
ctcatctccccgcctctatcctacccgctgcccctcctctcactcacaacccacctctcg
ctcctcgcaacccgcctcccgcgcctcaagtcagagggcgacgaagaccccatgttcgac
gacgactggcaggcctcgacgttcctgtaccctcgcgacggcagcgcacccgtcgacggc
ggctcgcgcccgcccataacactgctcgtcatcgccgtcggcggcaacgtcatctttgac
cccgcgcgcgaggagctcgccgtcgcggagtcagcgctggcggtgtcggttgccgaggag
aagacggccgcctcggctggcgggatggacgtggacggtcgccagctgaagctgctctcc
gtgcggacggtcgacccgccttcgcggttgacggcgcccggcgtgcccaattctgtgaac
ccggccacaggcctcgctggcacgccgttaaaggcaccgacggccccggcggctgcgcag
gggcaggccgcggagggagtttggaagccacctataggaggtacgaaggtacacgtgatt
gaggggatgatctccaaggttctggagaaggggggcgtcgcggacgaggtgctggaggcg
attgccgcggtagagctggcctaa
DBGET
integrated database retrieval system
