Camponotus floridanus (Florida carpenter ant): 105251911
Help
Entry
105251911 CDS
T03919
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105251911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfo03019
]
105251911
Messenger RNA biogenesis [BR:
cfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105251911
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105251911
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
105251911
NCBI-ProteinID:
XP_011257319
LinkDB
All DBs
Position
Unknown
AA seq
2407 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKKNYEDSCQEISVLVQWHGLEADRHFLRCLISCVDFSKG
EQSDSSAKDYFQAKLLKQECNSLLSKPCFISNLCFAIDNPLHHQKSLNPSPKFFVNLKKT
LGLTLVQEVAFAIALQHSENTELRLLALEHTQKQLPELIKNYINSETSNKHHEGGLHDSL
PEVLQLILGQVFHTSNPYNIPVEAKEKFLQNLRRDFPRELVPVVLAPFLYPGDGETSQFK
IEFNMAVNQMDNSTLVELIMELGYSFTSNVDECRSSLAGLGAREISPTCVARVLAHMARS
CSNLEDAGGLQSFWGNSAASQDSSKEKPSDNSIPTTWNVEVFIQTLKEMQSTLSWNDVIV
KLDHAEFIIKDRQGLSLLITGLKLGLQHQGYPPDRFPVELFYRHWDNVEGQFSLIQQILK
CPDIFCFADYPYHSVTVDVLKAAPESDSKEGQTWRSLNIVELLLHMAERGLYNSVQEIFK
WPVQHCPDVLVLALLQINPPLTLLRQELFTTLLPIFLGNHPNSAVILHHAWHSNNAKIKT
IIMHAMADWYTRGDHDQTRLSRILDVAQDLKALSALLNSQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVAACVKFLQRRCPQVMGPGIKEDPTIPKASQLPQETLTTILACLQ
VCAGSVSQELSELIMTMVQHCSLMLSKSTMNRPPPPGVLRHRGLEPFNPATLGSQLFSSK
QVDPLGNLSSSLATMGLGTGLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGGTIGGLSRLGPPTGIEKARMPETSSLFPDMSTNVSKEVED
EANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYP
EKELQITAQLFGGIIERGLVNSYMTLGLALRFVLDALKKPEGSKMYYFGITALDRFKSRL
KDYQTYCEHVRTIPHFNEFPPHLIEYIEYGLQGQEPPSRPQGPVLPKTLAAMLAPVTTPY
KTMTTTTITTSTTQAKPSTTPTTSLSARPSMPSVANATNIDTLLVATDKEEKITTPPEAL
QDKTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDC
IKLPEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDI
DLKSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDL
KLNLKFEIEVLCKNLSIDVGELKPVIYLKDPEKLRNLEYQLSHPNKKVEPTTNQQQPQGP
IEELVGSTTTSGTVINPQTAPPANTTPSLPTGGAPEPRFSYMDISVTGIANISQHISINN
QLPLFQTHPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRIR
TAGRNMVRNLTAGMAMITCRDQILASISTNLKQALLTALIGTTPQQKELAEQAANVVAAD
NMELACAFVQKTAIEKALPEMDKRLMSETELRKIARQEGRRYCDPLAKYQAERMPEQIRL
KVGGVTPQQMAVYEEFARNIPGFLPLSERDTQALFMPKPINETPVTAFTPNSAVTVATAQ
QVAAYAAAVSNDEVGAMLEKLAAEAEVLLGAMGPAAPPPQHAALHSLLESIILTRRSRDA
GAAMTLLKKAVEGLLDGPIISGVIESENLIQRYRELHLRILKCLQDPRAYGMQWTNKHVT
RCLTECREEFRYNFEAVDYLIRSHLISLPQYDVALAQAMEAGNAMATAFAMQLVQLYLID
ERQATHVTETDLFHTIEILARMAHHRTPPEGILLFRLTSLVDSLRANHDSGVLVDRAPAG
PTAHIHSGILQVRARDFDDPPGLMEKTEYLLREWVQMHHSPQHARDPTKAFSIFVHQMNI
HGILKTDDLITRFFKLSTQMCVDLCYRALSETATAPSIMRAKCFHSLDAFVRLVALLVKH
SGDATNTHTKINLLNKVLGIVAGVLLQDHEIRGTDFQQLPYHRIFIMLFLELCAPEPVLE
AVNFQVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLI
DLFKYLAPYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMR
NLILSAFPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASTIQPLTFKKELDSYLKARA
PVTFLSELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIAFIRSKGHAPNMSTIAHSAHM
DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVL
LERLIVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVPT
TETEIPE
NT seq
7224 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaatttg
agtaagaaaaattacgaggacagctgtcaagagatatcggtcttggtgcagtggcacggt
ctagaagcagaccgacatttcttgcgctgtctgatctcgtgcgttgacttttccaagggc
gaacagtcagattcgagcgcgaaagattatttccaagcaaagttgctgaaacaagagtgc
aacagcttactgagcaaaccttgttttatatctaacctgtgctttgctatagataatcct
ttacatcatcaaaagtcgctgaatccctccccaaagttttttgtcaatttaaaaaaaaca
ctcggtttaactttggtgcaggaagttgcctttgcgattgctttacagcattcagaaaat
acagaactccgtttgttagctttagagcatactcagaagcagttgcctgaattaataaag
aattatataaattccgaaacaagcaataaacatcacgaaggtggtctgcacgattctttg
cctgaagtccttcagttgatacttggacaggtttttcataccagcaatccttataatata
cctgtcgaggcaaaggaaaaatttcttcaaaaccttcggcgcgactttccccgtgaactg
gtaccagtggtgctagcaccatttttgtacccaggagacggggaaacatcacagttcaaa
atcgaattcaacatggctgtcaatcagatggataacagtactctggtagagttgattatg
gaattaggatatagctttaccagtaatgtggatgaatgtcgatcatcattggcaggttta
ggcgcgagagaaatatcgccgacatgcgttgctcgcgtgttggcgcatatggcacgtagc
tgtagcaatcttgaggatgctggaggcttgcaatcgttttggggcaattcggctgcctct
caggattcgagtaaagaaaaaccatcagacaatagtatccccacgacatggaacgtcgaa
gtatttattcaaactttaaaagaaatgcaatctacgttatcatggaatgatgttatagta
aaattggaccatgcagagtttattatcaaggataggcaaggattaagtttattgattaca
ggtctcaaattaggcctccaacatcagggatatccgcctgataggtttcctgtcgagtta
ttctatcgacattgggataatgtagagggtcaattttctttgattcaacaaattcttaaa
tgtccagatatattttgtttcgccgattatccgtatcattcggtaactgtcgatgtattg
aaagcagcccctgagagtgatagcaaagaaggccaaacgtggcgatcactgaatatagtc
gaattgcttctacatatggccgagagaggcttgtataattctgtacaggaaatatttaag
tggccagtacaacactgcccggacgtgcttgttttggcgttattacaaataaatccaccg
ctcacgttattgagacaggaattgtttaccacactattgccgattttcctcggcaatcat
ccaaattctgctgtgatactgcaccacgcatggcattccaataatgctaagataaagacg
ataataatgcatgccatggcggattggtatacacgcggtgatcatgatcaaacgagatta
tctcgaattctggatgttgcacaagatttaaaggctctttctgctttgcttaattcacaa
tcttttccattcgtcattgatctcgcttgtttggcgtctcgacgagaatatttgaaatta
gaaaaatggttgacagataaaattagagatcacggagaagtttttgttgctgcctgcgtt
aagttcctgcaacgacgatgtcctcaagtcatggggcctggtataaaggaagaccctaca
attcctaaagcaagtcaattaccacaggaaacgcttactacaatattggcttgtttgcaa
gtttgcgctggaagtgtctctcaagaactttcggaattaataatgacaatggtgcagcat
tgcagtttaatgttgagtaaaagtactatgaacagaccaccaccacctggagttttaaga
catcgaggattagaaccatttaatccagcaactttgggaagtcagttattttcctcgaaa
caagtggatcctttggggaatcttagttcgagtctcgctactatgggtctcggcacaggt
ctcggacccccaagtagttccgcatttaatttgcccggcgctttgggacctctagtttcg
gcacccggctctccctcgcgactcatgggaccttctccgagtccatttcctatgttgccc
ttatcctcgcaactacattcgggtccggttggtactcaaggaccgtccgtgcttcccggt
ggtacgataggtggattgagtcgtctcggaccgccaaccggcatcgagaaagcaaggatg
ccggaaacttcaagtctattcccagacatgagtacaaatgtatccaaagaagtcgaggat
gaggcaaacagctattttcaacgaatatacaatcatccgccgcacccaactttatcgatc
gacgaagtgctcgatatgttaaaaaaatttcaagattctggtattagacgggaaagagaa
gtgtttaattgtatgttgcggaatctattcgaggagtatagatttttccctcagtatcca
gagaaagaactacaaataacagcgcaattgttcggtggtattatcgagagaggcctcgtc
aacagttatatgactctcggcttggcgttaaggtttgttctcgatgcgctcaagaaacca
gagggtagcaaaatgtactatttcggcataacggctctagatcgattcaagagccgtttg
aaagattatcaaacctactgtgaacatgttagaacaattccgcatttcaacgaattcccg
ccgcatctgatagagtacatagagtacggactgcaagggcaggaaccgccgtcgagacct
caaggtccagttcttccgaaaactttggcggctatgttggctccggttacgactccgtac
aagaccatgactacgactaccatcacaacaagcactacacaggcgaaaccgtccacaact
ccgactacatctctttcggccagaccctctatgccttcagtcgctaatgcaactaatatc
gatacattgcttgtggcgacggacaaagaagaaaaaattacgacgccaccagaagctttg
caggacaagacagctttcattttcaataatctcagtcaattgaatctgcaacagaaatgc
gacgaaattcgcgagattgtgacggaggaatattggccatggatggcgcaatatctagta
atgaaacgcgccagtatagaattgaattttcatgccctatactcgaattttttggattgt
ataaaattacctgaagtcaataaaatggtcaccagagagacatttcgaaatatcaaggtt
ctcttacgaagcgataagggaatagctaatttctcagatcgatcgctattaaagaatcta
ggacactggctcggaatgttaacgctcggcaggaataagcctattttacaaatagatata
gacctaaaaagtttactcgttgaagcatatcataaaggccagcaagaattactttatgta
gtgcccttcgtcgcaaaagtacttgaaagttgtgcgaaaagtcgtgtctttcgaccacca
aatccctggacgatggcgattatgaatgttttagctgaactacatcaggaacctgatctg
aaattgaatttaaagttcgaaatagaagtgctttgcaagaatctgagcattgatgttggg
gaattaaaaccggtcatttatctgaaagatcccgaaaaattgcgtaatttagagtatcag
ttatcgcatccgaataaaaaagtggaacctactactaatcaacagcaacctcaggggcct
atagaggaattggtcggatctacaacgaccagcggtaccgtcatcaatcctcaaaccgca
ccacctgcgaacacaacaccctcgttgccaaccggcggcgcacctgaaccacgatttagt
tatatggatatatctgtgacaggcatcgctaatatatcgcagcacattagcatcaacaat
caattgcccctattccaaacacatcctcatctgaagcagtttgttcgcccagcagttgaa
agagctattcaagaatggattcatccagtcgtcgatagatctattaaaatagctcttaca
actagtgagcagatagtgaggaaggattttgcattggatcccgaagaagtgcggatacga
acagctggacgtaacatggtgcgcaatttaaccgctggcatggctatgatcacatgtcgt
gatcagattttggcatccatcagcacaaatttaaaacaagccttactcacggcattgatc
ggtacgactccacagcaaaaggaacttgctgaacaagctgcaaatgtagttgctgctgat
aacatggaactcgcgtgcgcatttgtacaaaagactgctattgaaaaagcactacctgag
atggacaaacggctaatgagcgagacggaactgcgaaaaattgcacggcaagaaggtcga
cgatactgtgatcctctcgccaagtatcaggctgagcgaatgccagaacagatccgattg
aaagttggtggtgtaacgccacaacagatggccgtttatgaggaatttgccagaaatata
ccaggatttttaccgctttccgaacgggatacccaagcactcttcatgccgaaacctatc
aatgaaactcccgtcactgcattcacacctaattcagccgtgacagtcgctacggcgcaa
caagtagcagcttacgctgcggcagttagcaatgacgaagtgggtgctatgttggaaaaa
ttagctgcagaagcggaagttcttttgggtgctatgggacctgcggcacctccaccgcaa
cacgctgctcttcatagccttttggaatcgatcattttgactagaaggtcaagagatgcc
ggtgcggctatgacgttattaaaaaaagctgttgaaggtttgctagatgggcctatcatt
tctggtgtcatcgaatcggagaatcttatacaacgctatagagaattgcatttacgtatc
ttaaagtgtcttcaggatcctcgtgcgtatggtatgcaatggactaataagcacgtgacg
cgttgtctaactgaatgcagagaagaatttcgatataattttgaagccgtggattacctt
ataaggtctcacttgatcagtcttcctcaatatgacgtagctctagcgcaagctatggaa
gcaggaaatgctatggcaacagcatttgccatgcaattggttcaactctatttaattgat
gagagacaagcaactcatgttaccgagaccgacttatttcatacaattgaaatattggct
cgaatggcacatcacagaacaccaccagaaggaatcttactctttagattgacgagttta
gtagattcattgcgtgccaatcatgattctggtgtattggtggacagagctccagcagga
cctacggcacacattcattctggaatcctgcaggtgagagctcgcgatttcgatgatcca
cctggattaatggaaaagacagagtatctattgcgcgaatgggtgcagatgcatcacagt
ccacagcacgcacgcgatcccaccaaagcgttcagcatatttgtgcatcagatgaacatt
catggaattctcaaaactgatgatcttattacaagattcttcaagctgagcacgcagatg
tgtgtcgatctctgctatcgcgctctctcggaaaccgcgacagctccctcaatcatgcgt
gctaagtgcttccattcgttggacgcatttgtacgtctagtagcgctcttagtgaaacac
tcgggcgacgccaccaacactcacaccaagatcaatctcttgaacaaagtgctcggtatc
gttgccggagtgttgctgcaagatcacgaaatacgcggtacggatttccagcagttaccg
tatcacagaatcttcatcatgctctttctggaactatgcgcgccagaaccagtactggaa
gctgtcaattttcaagtattgacggctttttgccacaccctgcatattctgcgcccggca
aaggcatccggcttctgttacgcctggctggaactagtttcgcaccgagttttcataggg
cgtatgcttgctattacgcctcagcaaaaatgctgggggatgtatgcgcaacttctcatc
gatttattcaaatacctcgcgccctatcttcgtaacgcggagctcgcgaagccggtgaca
agcctctacaaggggacactgcgagtgttgttggtactattgcacgactttcctgaattt
ctctgcgactatcactatggattttgcgacgtgataccgccaaactgcatacaaatgagg
aatctaatattgagtgctttcccaagaaacatgcggctgcccgatccgttcacgccgaat
ttgaaggtcgacatgcttcaggagatagcgcacgccccacgcgttcttaccaattttgca
tccacgatacagccgttgaccttcaagaaagagctcgactcttatctaaaagctcgcgcg
ccggttaccttcttgtccgagttacgcagtaatttgcaagtgtcacaagaagccggcgtc
cgttacaacattcaattgatgaatgccctggtgctctacgtgggtacgcaagcaatagcg
ttcattcgcagcaaaggccacgctcccaatatgtctacgatcgcacactccgcacacatg
gacatctttcaaaatttggcggtcgatctcgacaccgagggtcgttatttgttcctgaat
gctattgcaaatcagctacggtaccccaacagccacacgcattacttcagctgtacgctt
ctctacctatttgccgaagcgaacacggaagcgatacaggagcaaatcaccagggttctc
ctcgaaagactgattgttaacagaccacatccatggggtcttctcatcaccttcatcgaa
ttgattaagaatccaacttacaaattttggtcgcatgaatttgtacattgtgcgccagaa
attgaaaaattgttcgaatctgtagctagatcgtgtatggtgcagaaacaggtgcctacc
acggagacggagatcccggagtga
DBGET
integrated database retrieval system
