Collimonas fungivorans: CFU_0394
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Entry
CFU_0394 CDS
T01583
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFU_0394 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfu03021
]
CFU_0394 (rpoC)
03400 DNA repair and recombination proteins [BR:
cfu03400
]
CFU_0394 (rpoC)
Enzymes [BR:
cfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFU_0394 (rpoC)
Transcription machinery [BR:
cfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFU_0394 (rpoC)
DNA repair and recombination proteins [BR:
cfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFU_0394 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AEK60232
UniProt:
G0AEU7
LinkDB
All DBs
Position
495670..499905
Genome browser
AA seq
1411 aa
AA seq
DB search
MKALLDLFKQVQQNETFDSIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVITDPGMTPLKRCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRAIDIDRDAETLRQELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFHKLEVMGIASTIKAAKKEVENQTSVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREQINGKGEGMMFPDVSEAIRAYDNK
EVELTTRVTVRITEYPKDPVTGEFVKTIKRYETTVGRAILSEILPKGLPFTVLNRALKKK
EISKLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATIIATAEQ
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMEQLKVEDVVRRDGTKGTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKAMVEGGEVIEALRDRI
LGRVAANDIVNPETQGTLYEAGTLLDEDAVEEIERLGIDEVKVRTPLTCDTRYGLCAQCY
GRDLGRGSLVNNGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSAVASSVEAKSNGTVR
FTATMRYVTNGKGELIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGLTIKAGTALA
TWDPLTRPIITEYTGTVRFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV
KLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVDAGDASYITGEQVERSELLDENDRVIAAGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDTLRGLKENVIVGRLIPAGTGLAFHRARKEKDSWEAEE
RTALLQSEQAARLAAAEARAAEELGAQGGEA
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatttattcaagcaagttcagcaaaacgaaacgttcgactcgatc
aagatcggtctggcgtcgcctgaaaaaattcgttcgtggtcttatggcgaagtaaaaaag
cctgaaaccatcaactaccgtaccttcaagccagagcgcgacggtctgttctgcgccaag
atttttggcccgatcaaagactacgaatgcctctgcggcaagtacaagcgtctgaagcac
cgcggtgtcatctgcgaaaagtgcggcgttgaagtcacgctggccaaggtgcgccgtgag
cgcatgggccatatcgaactggcttcgccgactgcgcatatctggttcctgaaatcgctg
ccgtcgcgtctgggcatggtcctcgacatgaccctgcgggatatcgaacgcgtcttgtat
tttgaagcctacgtcatcaccgatccaggcatgacgccgctgaagcgttgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgatttcaccgcattcatg
ggcgccgaaggcatccgtgagttgctgcgcgcgatcgatatcgaccgtgatgcggaaacc
ctgcgtcaggaattgaaagagtcgaagtccgaagccaagatcaagaaatacgccaagcgc
ctgaaggtgttggaagcgttccagcgttcgggcatcaagcctgactggatgatcatggaa
gtgttgccggtgctgccgcctgagttgcgtccgctggtgccgctggacggcggccgtttc
gccacctccgacctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgcctgaag
cgcctgatggaattgcgcgcgccggaaatcatcacccgcaacgaaaagcggatgctgcag
gaagcggttgactcgctgctggacaacggccgtcgcggcaaggcaatgactggcgccaac
aagcgtccgctgaaatccctggcagaaatgatcaagggcaagggcggccgtttccgtcag
aacttgctgggcaagcgcgtcgactattccggccgttcggtgatcgtggtgggtccacag
ctgaaactgcatcagtgcggcttgccgaaactgatggcgctggaactgttcaagccattc
attttccacaaactggaagtgatgggcatcgccagcaccatcaaggcagccaagaaggaa
gttgaaaaccagacttccgtggtgtgggacatcctggaagacgtgatccgtgaacatccg
gtcatgctgaaccgtgcgcctacattgcatcgcctgggtatccaggcgtttgagccggtc
ctgatcgaaggcaaggcaatccaattgcacccgctggtctgcgccgcattcaacgccgac
tttgacggcgaccaaatggcggtccacgtaccactgtcgatcgaagcacagatggaagca
cgcaccttgatgctggcttccaacaacatcctgttcccatcgaacggcgaaccgtcgatc
gtaccgtcgcaggatatcgtgctgggtctgtactacgccacccgtgagcaaatcaacggt
aagggcgaaggcatgatgttccctgacgtgtcggaagcgatccgtgcctacgacaacaag
gaagtcgagctgactacccgcgttaccgtgcgtattaccgagtatccgaaggatccggta
actggtgagttcgtcaagaccatcaagcgttacgaaaccactgtcggccgtgcgatcctg
tcggaaatcctgcctaagggcctgccattcaccgtgcttaaccgcgcgttgaagaagaag
gaaatctcgaagctgatcaacacggcattccgtaagtgcggcctgcgcgctacggtggtg
tttgctgaccaactgatgcagtccggtttccgcctggcgactcgtgccggcatctcgatc
tgcgtggacgacatgctggtaccgccgcaaaaggcaaccatcatcgctaccgcagaacaa
gaagtgaaacagatcgaacagcaatattcgtccggtctggtgactgccggcgaacgctac
aacaaggttgtggacatctggggcaaggccggcgacgacgtcggcaaggccatgatggaa
cagctgaaggtagaagacgtggtgcgccgcgacggcaccaagggtacgcaagaatcgttc
aacgccatttacatgatggccgactccggtgcgcgcggttccgcagcacagattcgtcag
ctggccggtatgcgtggcctgatggcgaaaccggatggttcgattatcgaaacgccgatc
accgcgaacttccgcgaaggtctgaacgttttgcagtacttcatttcgacccacggtgca
cgtaaaggtctggccgacaccgcgctgaagacagcgaactcgggttacctgacacgtcgt
ctggttgacgtgacccaggatctggtcgtgatcgaagatgattgcggcacttccaacggc
gcctcgatgaaggcgatggttgaaggcggtgaagtgatcgaagcgctgcgcgaccgtatc
ctcggccgtgttgctgccaacgatatcgtcaacccggaaacccagggcacgctgtacgaa
gccggtactctgctggacgaagatgcggtggaagaaatcgaacgcctgggcatcgatgaa
gtcaaggtccgcacaccgctgacttgcgacacacgctacggcctgtgcgcgcaatgttac
ggtcgcgacctgggccgcggctcgctggtcaacaacggtgaagcagtcggtgtggttgct
gcgcagtcgatcggtgaacctggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcgtcgcgttcggcggtggcatcgagtgttgaagccaagtccaacggtacggtccgc
ttcacggcgaccatgcgttacgtgactaacggcaagggcgaactgatcgtgatttcccgt
tccggtgaagtcctgatcactgacgaccatggccgtgagcgtgagcgtcataaagtgcct
tacggtgcaacgctgatcgtcaaggatggcttgaccatcaaggccggtaccgcactggcg
acatgggatccgctgactcgtccgatcattaccgagtacaccggtaccgtgcgcttcgag
aacgtcgaagaaggttctaccgtggcccgtcagatcgacgaagttaccggtctgtcgaca
ttggtggttatcgacgcgaagcgtcgtggttcggtcaccaagactgtccgtccgcaggtc
aaactgttgaacgagcaaggcgaagaagtcaagatcgccggtactgaacacgctgtgacg
atcggcttccaggtgggcgcgctgattaccgtgaaagacggtcagcaagtgcacgtgggt
gaagtgctggcgcgtatcccgactgaatcgcaaaagacacgcgatattaccggtggtctg
ccgcgcgttgccgaactgttcgaagcacgttcgccgaaagatgccggcatgctggctgag
gtcacaggtactgtggccttcggtaaggaaaccaagggtaagcaacgtctggaaatcaca
gacatggacggcaacaagcacgagttcctgattaccaaggacaagcaagtgctggtacat
gacggccaagtcgtgaacaagggtgaaatgattgtcgacggcccagccgatccgcaagac
atcctgcgcctgttgggtatcgaagcgctggcgcgttacatcgtcgatgaagtccaggac
gtgtaccgcttgcaaggcgtgaagatcaacgacaagcacatcgaagtgatcgtgcgccag
atgctgcgccgcgttcagatcgttgatgcgggcgatgcgtcttacatcactggcgagcag
gtcgagcgttcggaactgctggacgaaaacgatcgcgtgattgcagcgggcaagattcct
gcaacctacgaaaacgtgttgctgggtattaccaaggcatcgctgtcgaccgattcgttc
atctcggccgcatcgttccaggaaaccacccgggtgttgaccgaagccgccatcatgggc
aagaaagacaccctgcgcggcctgaaggaaaacgtgatcgtcggccgcctgattccagcc
ggcaccggtctcgcgttccaccgtgcacgcaaggaaaaagacagctgggaagcggaagag
cgcacagcactgttgcaatccgagcaggctgcacgcctggcggctgccgaagcacgggca
gctgaagagctgggtgcgcagggcggcgaagcttaa
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