Collimonas fungivorans: CFU_0427
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Entry
CFU_0427 CDS
T01583
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cfu
Collimonas fungivorans
Pathway
cfu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFU_0427 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfu03021
]
CFU_0427 (rpoA)
03400 DNA repair and recombination proteins [BR:
cfu03400
]
CFU_0427 (rpoA)
Enzymes [BR:
cfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFU_0427 (rpoA)
Transcription machinery [BR:
cfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFU_0427 (rpoA)
DNA repair and recombination proteins [BR:
cfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFU_0427 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
AEK60264
UniProt:
G0AGD4
LinkDB
All DBs
Position
520528..521505
Genome browser
AA seq
325 aa
AA seq
DB search
MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG
VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKDGEGAVLASDIDLPHDVEL
VNPDHVIAHLTAGGALDMQIKVEKGRGYVPGNVRRLTEDANKTIGRIILDASFSPVRRVS
YAVESARVEQRTDLDKLVINIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEAAAEAP
SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI
KEVLASRGLTLGMKLENWPPAGLEK
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacagcttgttgaagccacgtattatcgaagtagaagcactgggtgccggccac
gctaaagtcgtgatggaaccgtttgaacgtggttacggccacacgctgggcaatgcgctg
cgtcgcgtgctgctgtcgtcgatggttggctatgcgccgactgaagtgacgatcgccggt
gtggttcacgaatactcgtcgctcgacggcgtgcaggaagacgtagtcgacatcctgctg
aacctgaagggtgtcgtattcaagttgcataaccgtgacgaagtcacgctgaccctgaaa
aaagatggcgaaggcgcagtgctggcttccgacatcgatctgccgcatgacgttgaactg
gtcaatccggatcacgtgattgcccacctgactgccggtggcgcactcgacatgcagatc
aaggttgaaaaaggccgcggctatgtgccaggcaacgtccgtcgcctgacggaagatgcc
aacaagaccatcggccgcatcatcctggacgcatcgttctcgccggtccgccgtgtttcc
tacgctgttgaatcggcgcgcgtggaacagcgtaccgacctggacaagctggtcatcaac
attgaaaccaatggcgtgatcactccggaagaagcgattcgccaatcggcacgcgtgctg
gttgaccagttgaacgtgttcgctgcgctggaaggcaccgaagctgctgccgaagctcca
tcgcgcgcaccgcaagtcgatcctatcctgttgcgtccggtcgacgacctggaactgaca
gtacgttcggccaattgcctgaaagcagaaaacatttactacattggcgatctgatccag
cgtagcgaaaatgaactgctgaagacgccaaacctgggccgcaagtccttgaacgaaatc
aaggaagtcctggcatcccgtggtttgacactgggcatgaagctggaaaactggccgcct
gcaggcctggaaaagtaa
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