Choristoneura fumiferana (eastern spruce budworm): 141428067
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Entry
141428067 CDS
T11020
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141428067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141428067
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
141428067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_8
TPR_12
TPR_16
TPR_17
TPR_19
TPR_CcmH_CycH
TPR_11
TPR_7
ANAPC3
TPR_6
Alkyl_sulf_dimr
Motif
Other DBs
NCBI-GeneID:
141428067
NCBI-ProteinID:
XP_073943906
LinkDB
All DBs
Position
5:complement(9665573..9670683)
Genome browser
AA seq
1272 aa
AA seq
DB search
MADVKTLVKEARKLIDENKYKEAQECCKNILRKDKENYMALVLLGKSFQDASQAPMAYQK
AIASKPEHPLAWLGLASYYERNEDESLKTKLFSIYDEILKLQIEEDKSLEIITKLGQLGC
SLKNSDAITTIIQQCDKDPATKLSKAADLQLLELLKKEVPPKEGDIPSILKILDEFYIND
PSNNLELLYAKVILQKSNYAQAVDEIMHLKFFSHNVVLRELICKHICSKYVEEDSFHDIP
IDEYVEKIIEGIENSKFPGLLRCMISFDKSEYLEAYKQCVPLINYHQADITEATFIIKCA
IMLKKWPVVQKLASNFLTKAKELSFILKLKKFLFLSLAKQKKWKYAISAASDIPIDTLSN
SEQALLAECSIETDQPADQIIANLKSTEYYLQLCALSLLKHKKYKETTTLLENTTNDSLN
LFYLGKAFWKLKEYEKSQINLLKAAKLNPYHPETFLYLGHFYCEHKQDLEKAKKCFEKAH
SLDSTSIKITKMLSEIYVKLELSEADFELLTAAEKNVQTQESWLSLRLGLHYMKKRLWEN
AVVQFRNVIKSDQGNITAFECLADAYYSRGSYTSALRAYNKVMVADPNKSSHCLTKIGNI
HSLLTQYEDAIATYEKVLKIDPYSMLALKGIAETWIRIAKKKLTGKVYGSARDCAQKAVV
YLLQALQKEKQFVCLWKLLADTLMFVTTLPNKYAFVYMKDLITESDEEILKKEKVDIYPK
AIACYSIVAKRNQQSASYELASTYFAFYQESKKLANCHIAYNLTLKCIKEKPNIWRNWNL
LGKICLFIKKYDLAQHCFIKALQVTRKWSVAKIWCNLGTLYLKLKLYKLSNYCFWRGQST
LPSYPLSWVGQALIAEVIREEEAMDLFRHASRLGYHPESVLGYADWVCRTLKKTNNYKEN
PEYKYVIDGLHAIPYAIDLIEWYSSFKPNDACACTMLGILQERFGLIGAAFKSYEKALLY
VDDDNRNITLLNMGRILLRMDKYDEAVKVYQAITEASLNSTCGLALALYKKGLYEESYSA
YDTALHWLSNEDSEKADILVAMAGIVYMFKGADDAKTLLFHSIQVSQKKPTPYSLFAICS
LGLIHSDQSLSKLAVSEMQKYDMDSNFGFDIGFLKSYVLLCNDNLDGAIKLLSDSLHDHP
SNTLLWFCMAQYCLRESSKRARLASSCAQRALCLAHYGEGKCNPAEIISTASIAEHFAGN
PARALFLAKEGLHMYPNQSEIWAALLFSLLPHKKWGERKDWLLAAAGHIRRHLEISRPLS
RWVNLLEKRLSR
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgttaagacattggtgaaagaagcaagaaagcttattgatgaaaacaagtac
aaagaggcccaagaatgctgcaaaaacatactgcggaaagataaggaaaactatatggca
ttagttcttctcgggaagtcttttcaggatgctagccaagcaccaatggcttatcaaaaa
gctatagcaagtaagccggagcatccattggcctggctcggcctcgcaagctattatgaa
cgaaatgaagatgagtctttaaaaactaaactattctcaatttatgatgagatattgaaa
ctgcaaattgaggaagataaatctctagaaatcataactaaacttggccaacttggttgc
agtttaaaaaacagtgatgctatcactacaatcatccagcaatgtgacaaagatcctgca
accaaattatcaaaagcagctgacttgcaactgctggaactcctcaaaaaagaagtccct
cccaaagaaggtgatataccatccattttaaaaattcttgatgaattctacataaatgat
ccaagtaacaacctagagttgctttatgccaaagtaatactacaaaaaagtaattacgct
caagcagtggatgaaatcatgcaccttaaattcttttcgcataatgttgtattacgcgag
ttgatctgcaaacatatttgcagtaaatatgtggaagaggattcctttcatgacatacca
attgatgagtatgtagaaaaaataattgagggtattgagaattcaaaattccctggttta
ctgagatgcatgattagttttgacaaatcagaatatttagaagcttataagcagtgtgta
ccgctgataaattatcatcaagcagacatcactgaggcaacattcataatcaaatgtgca
atcatgttaaaaaaatggcctgttgtacaaaaacttgcttcgaactttcttaccaaagca
aaggaactaagttttattttaaagttaaaaaagttcctatttttatctcttgctaaacaa
aaaaagtggaaatatgctatttctgctgcatcagacataccaatagacaccctatcaaac
agtgaacaagctcttcttgcagaatgttctattgaaactgatcaacctgctgatcaaata
attgcaaacttgaaatcaacagaatactatctccagctttgtgccttatcattattaaaa
cacaaaaaatataaggagaccacaacactacttgaaaatacaactaatgactctttaaat
ttgttctacttgggcaaagctttttggaaactaaaggaatatgaaaaaagtcaaattaat
ttactcaaagctgcaaaattgaacccatatcatcctgaaacttttctgtacttgggacat
ttctattgtgaacacaaacaggatttagaaaaagctaaaaaatgctttgaaaaggcacac
agtctagacagtacaagcataaaaataactaaaatgctaagtgaaatttatgttaaattg
gaactcagtgaagctgattttgagctgcttactgctgccgaaaagaatgtgcagacccaa
gagtcttggttgagtttaagattaggcctgcactatatgaagaaaagattgtgggagaat
gctgttgtacagttccgcaatgttattaaaagtgatcaaggaaacataactgcttttgaa
tgtttggcagatgcttactactctagaggatcttatacctcagcattgagggcttataat
aaagtgatggtggctgatccaaacaagagttcacactgcctgactaaaataggaaatata
cactctctcttaacacagtatgaagatgccattgctacctatgaaaaggtattaaaaatt
gatccttattctatgcttgctctgaaaggaatagcagaaacatggataagaattgccaaa
aagaagttaacaggtaaagtttatggcagtgctagagactgtgctcagaaagctgtagtt
tatctacttcaagcactacagaaggaaaaacaatttgtttgtctttggaaacttttagca
gacactttaatgtttgtcactactttaccaaataagtatgcatttgtgtacatgaaagat
ttaataacagaatctgatgaagaaattttgaaaaaagagaaggttgacatttatccaaag
gcaattgcttgttattcaattgtggctaaaaggaatcagcaatctgcttcatatgagcta
gcatctacatattttgcattttatcaagaaagtaagaaacttgctaactgccacattgct
tataacttgacactcaaatgcatcaaagagaaaccaaatatttggagaaattggaattta
ctggggaaaatatgtttatttatcaaaaaatatgatcttgcacaacattgttttattaaa
gctttgcaagtaactcgaaagtggtcagtagctaaaatatggtgcaatttggggacactg
tatcttaaactaaaactttataaattgtcaaactactgcttttggcgcgggcagtccact
ctcccgtcatatccccttagttgggttggtcaggcattaatagctgaagtaatccgtgaa
gaagaagcaatggaccttttcagacatgcatctcgtcttggctaccaccctgaaagtgta
cttggatatgctgattgggtgtgtcgcacattgaaaaagactaataactataaagaaaac
ccagaatacaagtatgtcatagatggtctccatgcaataccatatgcaattgatttgatt
gagtggtattctagttttaaaccaaacgatgcatgtgcatgcactatgcttggaatacta
caagaaagatttggtcttataggagctgcatttaaatcatatgaaaaggcattgctatat
gtagatgatgataatagaaatataactcttttaaatatgggaagaatattactgaggatg
gacaaatatgatgaagctgtaaaagtatatcaagcaataactgaagcaagtctgaattca
acatgtggattagctcttgcattgtataagaaaggcttatatgaagaatcatactctgct
tatgacacagcactgcactggttgagcaatgaagatagtgaaaaagcagacattcttgtt
gctatggctggaattgtgtacatgttcaagggagcggatgatgcgaaaaccttgctattt
catagcattcaagtatctcagaagaaacccacaccatacagcttgtttgctatttgttct
ttggggcttatacattctgaccaaagcctttccaaacttgctgttagtgagatgcagaaa
tatgacatggatagtaactttggatttgatataggttttcttaaatcatatgttctcctg
tgcaatgataatttagatggtgctataaagttgctaagtgactctcttcacgatcatcca
agtaatactctgttgtggttttgtatggcgcaatattgtctcagagagtctagcaaacgg
gctagattagccagcagttgcgctcaaagggctctgtgccttgctcattatggagaagga
aaatgtaatccagccgaaataatttccacagcaagtattgctgaacattttgcaggaaat
cctgctagagctttgtttttggccaaggagggattacatatgtatcctaatcagtctgag
atatgggctgctcttctattctcgctcttaccgcacaaaaagtggggagaaagaaaagac
tggctacttgccgctgctggacatattcgtcggcatttggaaatctcacgacctcttagt
agatgggttaatcttttggaaaaaaggcttagtaggtaa
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