Choristoneura fumiferana (eastern spruce budworm): 141432703
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Entry
141432703 CDS
T11020
Symbol
Not1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141432703 (Not1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141432703 (Not1)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
141432703 (Not1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
141432703 (Not1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
141432703
NCBI-ProteinID:
XP_073950532
LinkDB
All DBs
Position
Z:26072557..26093732
Genome browser
AA seq
2391 aa
AA seq
DB search
MNLDSLTFSLSQINYLVINLSKKNFKQTSQELTKLVSLYGLEAENQLLRCLLAEAAKNIW
DTERSSSSASSVHASLLSQHLTSLLNHPAKATVVCRLVDHPPRSLQKILKPSNTLLNRLT
RLLKLTTAEDVAFSLLLGKNSSKPEIVSLAKQHLKKRFLELVQCYLDAERGHQVERAGLQ
ECSPEVLQTLLTSLAHENFRLAAVTKDLFLKRLRSDFPREVVPIVLAPLLYPDDTQTPLE
EMTTADDMAAAMMDNSLAEIIRDIGYSFTSSVEDCKNNMLNFGAREPTAIDVARIISMMV
RHHATLPDGPQIQTPGNFWMGHEAKKDIITHGHGGESWNAEVFVQTLKELASNLNWKEVI
LQLDHPEFIVPDRQGLNLLFTILRLGLQSAGYPPNIFPVEYLCRRWSNLEGQMSLISNIL
KHPDIFSFADHPFHPVSIDLLKSPPETDNKEVATWRCLYLVELLLYAAERDYYVQVHELF
KFPLQHCPDILLLALLQINPPITIFRQELLTTLIPIFLGNHPNSAIILHHAWHTQNPNIK
PIIMHAMADWYIRGESDQSKLSRILDVAQDLKALSLLLNVQSFPFVIDLACLASRREYLK
LDKWLTDKIRDHGETFVSAMVKFLQRRCPQVLGKGPDEQLPKAAQLPHETIATMLACLQL
CSPNVQPELQEAIYNVITNCQTLILSKTRPNIGGIARPHTRILETPFNPAGLGGQLFTQH
VDSIANLTPTVANLNLGAPTNTAFAMPGTLGPLVTTPGSPSRLIGAGPNSPFTMMPLPHN
NLPNMGALAARMNQAPAMDKPRIPDPINFPEMMQNVSKEIEDEANGYFQRIYNHPPHPTL
SIDEVLDMLKKFQDSPNKREREVFSCMLRNLFEEYKFFPQYPDKELHITAQLFGGIIEKG
LVPSYVSLGLALRFVLEALRKPEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFSE
FPPHLIEYIEYGLQSQEPPTKPQGAVLPTSLAAMLNQSAVVTVSAPYRAVVCAPSSISVI
SKVTNAAGGIGSRPSIANATNIDTLLTATDREEKISSPPEAMQDKTAFIFNNLSQLNLQT
KCEELKEIITDEYFPWLSQYLVMKRASIELNFHALYSNFLDVLKIRDVNKMVTKETYRNI
KVLLRSDKGIANFSDRSLLKNLGHWLGMLTLARNQPILHVDIDLKALLLEAYHKGQQELL
YVVPFVAKVLESCAKSIVFKPPNPWTMALMNALAELHQEPDLKLNLKFEIEVLCKNLSLD
IADLKPSIYLKDSEKLRLIEFQLSQPKPNKEVTNTMPVNQTIVQSSQMPLMPPQPPMIPS
EDMAATAPTPTSGLVTNDPGMMGVLGLPEPRFNYLDVNVSSTSAFGQKICFNPHIILFQN
YPHLKQYVKSAIERSIQEWIHPVVERSIKYALTTCEQIIRKDFALDPDEVRMRTCAHHMT
RNLTAGMAMITCREQIINTISTNLQAAFITALMPSTPQQKETVESAAAVLATENMELACA
IIQKTAVEKALPELDKRLMNDYEMRKIARQEGRRYYDPIVLTYQTERIPERVRLRVGGPT
DMQIAVYEEFACNIPGFMPVRDAGMFIPKPSAQDQIPQLTFSQVMNPTQVYGTDEMSTLI
SAAEVFLAQSLTVASLAVQSSNMHSLLECLILARRNRDIVSGCTLLQKAVEGLLDGHIVQ
PGASSDHVEMMTRYRDVHLRVLKLLEDARVYGHVWTAKQITCCLTECREELKYNLEAVDC
LIRNNLINLPQYDIALAHMMDNGNNYMAVAFSMQLVQLYLVDDRNNMYANESDLYHTTET
LVRIMSHSRQPPPEGLGSLIEMIRVNQDPSAYLGERSPLGPTAHIHAGILQVRARDYDDP
PGLLEKTENLLREWRNVLLSPLTEIEIAQNFNLYVHRMNMNGILKSDDMITRFFRIATQM
CIENVHQQLNDERVNPPPSPQKREKYYSMCDSFIKLVTLLIKNTADGGNPTPKLNLLNKI
LGIIAGCLLQDHDEHGTNFQQLPYHRLLLILFLDMNMAEPVLENMNFQVLTAFCHTLRII
RPSIVPGFCYAWLEMVAHRAFINRVLAVTPQQKGWGMYSTLLIDLFKFLDPFLRNTELAA
PVMMLYKGTLKVLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNLILSAFPRNMRLPDPF
TPNLKVDLLAEITLPPRAVINYATMIPSSQFKKDLDAYLKARAPVTFLSELRGNMQVVNE
PGRRYNSQLMNAVVLYVGTQAIAHIRSKGQTPNMSTIAHSAHMDIFQNFTVDFDYEGKYL
FLNAIANQLRYPNSHTHYFSCCLLYLFAEANSESVQEQITRMLLERLIVNRPHPWGLLIT
FIELIKNPIYKFWSHEFVHCAPEIEKLFASVARSCIVDKTGTAGGGQEIAE
NT seq
7176 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactctttaacgtttagcttatcgcaaatcaattatcttgttataaattta
agtaagaagaactttaaacagaccagccaggagttaactaagcttgtgagcttgtatggc
ctggaagcagaaaatcaacttttgaggtgcctcctcgccgaagcagcgaaaaatatttgg
gatactgagcgatcgtcgtcatcagcaagtagtgtgcatgcgtcgctcctctcccagcac
ctgacatcgttgctgaatcacccggccaaagctacagtagtctgccgcttggttgaccac
ccccctcgatcactacagaagatattaaagccctcaaatacattactcaatagacttaca
agattgttaaagttaactactgcagaggatgttgctttttcattgcttttggggaagaat
tcatcaaagcctgaaattgtatcactagcaaaacaacatctgaaaaagagattcttagaa
ctcgtgcagtgctatcttgacgcagaacgtggacatcaagtcgagcgtgcaggtcttcag
gaatgcagccctgaagttttgcaaactcttctaactagccttgctcacgaaaactttcgt
ttagcggctgtgactaaagacttatttttaaaacgtttacgaagtgactttccgcgtgaa
gtggtgcccatagtgcttgccccacttttgtatcctgacgatacacagacacctctcgag
gaaatgaccacagcagacgacatggccgcagccatgatggacaattcactggcagagatc
atccgagacatcggctacagcttcacctcgtcggtcgaggattgcaaaaacaacatgtta
aattttggcgctcgagaacctaccgcgatagatgtagcgaggattatctctatgatggtc
agacatcatgccactttaccagatggtccacaaattcagacgcctggaaatttctggatg
ggccatgaggccaaaaaagatatcattacacatgggcatggaggagaatcttggaatgca
gaagtttttgttcagactcttaaagagctggcttctaatttaaactggaaagaagtaatt
ttacagcttgaccatccggagtttattgttccggatagacaaggccttaatttattgttt
actatccttagattaggccttcagagtgcaggatatcctcccaacatatttcctgtggaa
tatctttgccgtaggtggagtaacctagaaggtcaaatgagtttgatcagcaatatcctc
aaacatccagatatctttagtttcgcggatcacccgttccacccggtctctatcgactta
ttgaagtctccacctgaaacggacaacaaagaagtggccacatggcgatgtctatatttg
gtggagctcttgctttatgcagctgagcgcgattattatgttcaagtacatgagttattt
aagtttccgttacagcattgccctgacattctgctgttggctttacttcaaatcaatccg
cctataactatcttcagacaggagttattgactacgttgattccgatattcttgggtaac
catcctaattccgcaatcattttgcaccacgcctggcatacgcagaatcccaacataaaa
cctattattatgcacgctatggccgattggtacatccggggagagagtgatcaatcgaaa
ctatctcgaatcttagacgtggcgcaagatctgaaagccttgtctctattactgaacgtg
caatcattccctttcgttattgacttggcgtgtttagcatcccgccgtgagtatttaaaa
cttgataaatggctaaccgataagataagagaccatggggaaacatttgtttcggccatg
gttaaatttctccaaagaagatgtcctcaagttcttggaaaagggccagacgaacaattg
cctaaagctgctcaactgccacatgaaactattgctactatgttagcttgtcttcagtta
tgcagtcctaacgtgcaaccggaactgcaagaagctatctacaacgtgataaccaattgt
cagacgctgatactaagcaagacgagaccgaacatcggaggaatagcgcgacctcatacg
aggatactggaaacgccctttaatcctgctggcttagggggtcagttatttacacagcac
gtagattcgatagcgaatcttacccccactgtcgcgaatttgaatttaggcgccccaacg
aacacagctttcgccatgcccggtactctgggccctctggttactactccaggttcacct
tcacgacttataggcgctgggccaaatagtccgtttacaatgatgccattaccacataac
aatcttcctaatatgggtgctttagcagcaagaatgaatcaagctccggctatggataaa
cctcgtattccagatcctataaatttcccagaaatgatgcaaaatgtgtcgaaagaaatc
gaagacgaagcaaatggctactttcaaagaatatacaatcatccaccgcatccaacttta
tccatagatgaagtattagatatgctgaagaaatttcaagattcaccaaataagagagaa
agggaagtgttttcatgcatgctgcgcaatctgtttgaagagtacaaattctttcctcaa
tatcccgataaagaactacatattacagcccagctctttggaggtataattgagaaagga
ctagtacccagttacgtttcattggggctagctctacgatttgttcttgaagccttgaga
aaaccagaaggatccaagatgtactatttcggaatagctgctctagacaggtttaaatcg
cgtcttaaagattaccataagtattgtgagcatgtaagggctattcctcattttagtgaa
tttcctcctcatctaatagaatatattgaatatggattgcaaagccaagagccaccgact
aagccacagggcgctgttttacccaccagtttggctgcaatgctgaaccaaagtgcagtt
gttactgtttccgcaccttacagggctgtggtctgcgcgccatcgtcaatttctgtaatt
tcaaaagttacgaacgccgccggtggtatcggtagcagaccatccattgctaatgctacc
aatatagatacccttctaactgcgacagaccgagaagagaagatcagttcacccccagaa
gctatgcaggacaaaactgcgtttattttcaataatctcagccagctcaacctacaaaca
aagtgcgaagaactcaaggaaataatcacagacgaatactttccttggctttcacaatac
ctggtcatgaagagagcttccattgagctaaactttcacgcgttgtattcaaattttctt
gatgttctcaagatccgtgatgtcaacaaaatggtcacaaaagaaacgtatagaaacatt
aaagtattattgcgatctgacaaaggcatcgcaaatttttccgatcgctcactgttaaag
aatctcggacactggctcgggatgctcacactggctcgcaaccagcccattcttcacgtc
gacattgatctcaaagcactcttgctcgaagcttatcacaaaggtcagcaagagcttctg
tatgttgtaccatttgtggccaaggttttggaatcttgtgcgaaaagtattgtcttcaaa
cctccaaatccctggacgatggcactgatgaacgctttagctgaattacatcaagagcct
gatcttaaactaaatttaaagttcgaaatagaggtgctttgtaaaaacttaagtttggac
atagctgatctaaagccttcaatatatctgaaggattcagaaaaacttagattgatcgag
ttccaactgtcacaacctaaacctaacaaagaagttacaaatactatgccggttaatcaa
acgatcgttcagtcatcgcagatgcctctgatgcctcctcaaccaccgatgattccctcc
gaggatatggcggccaccgcccccacgcccaccagtggactggtcacgaatgaccctggt
atgatgggagttctgggattacctgagcccaggtttaattacttagatgtaaatgtttct
tctacttcagcatttggacagaagatttgcttcaaccctcatattattctattccaaaat
tatccacatcttaagcagtatgtgaagtctgctatcgagaggtcgattcaggaatggata
catccagtggtcgaacggtctataaaatatgcgctgaccacttgcgaacaaattatccgt
aaagattttgctttagaccctgacgaagtacgaatgcgcacctgcgctcatcacatgacc
agaaatctcactgctgggatggcgatgataacttgtcgagagcaaatcatcaacactata
agcactaacttgcaagcagctttcatcacagcgctcatgccctctactcctcagcagaaa
gaaacagtagaaagtgcggctgcagttctagccaccgaaaacatggagttggcctgcgcg
atcattcaaaagacagcagttgaaaaagcgttaccagaacttgacaagagacttatgaac
gattatgagatgaggaaaatagcgcgacaggaaggcagaagatattatgacccaatagtt
ttaacttaccaaactgaaagaatccctgaacgagtacgtttgcgtgttggaggaccaaca
gacatgcagatcgctgtctatgaagagtttgcatgcaatataccaggcttcatgcccgtg
cgggacgccggcatgttcatacccaagccttcggcgcaggatcagatccctcaattgaca
ttcagccaagttatgaatccaactcaagtgtatggcacagacgaaatgagtactcttatt
tcggccgctgaagtgttcctagctcaatcattaacagtggcttccttggctgtgcaatca
tcaaacatgcactctctgctcgagtgccttatcctggccaggcgaaatcgagacatcgta
tcgggatgtactctattgcaaaaggctgttgaaggacttctggacggacatatcgtgcag
ccgggcgcgagcagcgaccatgtggagatgatgactcgctaccgcgacgtgcacttgcgc
gtgctgaagctactcgaagatgcgcgcgtgtacggccacgtgtggaccgctaagcagatc
acctgctgcctcaccgagtgcagggaggagctcaagtataacctcgaagcggttgactgc
cttatcaggaacaacctcattaacttgccacagtatgacatcgcattggcgcatatgatg
gataatggtaacaattacatggctgtggccttctcgatgcaacttgttcagctttatctg
gtggacgacaggaataatatgtatgccaacgaatccgatctgtatcacaccactgaaacc
ctggtcagaatcatgtcccattcgcgccaaccgcctccggagggtttaggcagcttaatt
gagatgattcgcgtaaatcaggatcctagtgcttacctcggtgagcgatctcccctagga
cccacggcgcacattcatgctggcatattgcaagttcgggccagagactacgacgaccct
ccaggcctgctcgagaaaactgaaaatcttcttcgtgaatggagaaacgttctgctgagt
ccgttgactgagatagagattgcacagaatttcaatctatatgttcaccgcatgaacatg
aatggaatattgaaatccgacgatatgattacccgattcttccgaattgctactcagatg
tgcatcgaaaatgtacaccagcaactgaatgacgagcgagtgaatccaccgccatcgcct
caaaaacgggagaagtattactccatgtgcgattcattcatcaagctcgtgacactgcta
attaaaaacacagctgacggaggtaaccctacgccgaagctgaatttgttaaacaagatc
ttgggcattattgctggatgtttgctgcaagaccatgatgagcatggaacaaactttcaa
caactgccgtatcaccggcttttgctgatcttattcctcgacatgaacatggctgaaccc
gtcttggagaatatgaatttccaggttctcactgcgttctgtcatacattgcggatcatc
aggcccagcatcgtccctggcttctgttacgcttggctcgaaatggttgctcatcgcgcc
tttatcaacagagttttggctgtaacgccacaacagaagggttggggaatgtactcaacg
ctgctgatagacctgtttaaattcttggatcctttcctgcggaacactgaactggccgcc
ccagtcatgatgctgtacaagggcaccttgaaagtccttctcgtattactccatgatttc
ccagaatttctttgtgattatcattatggattctgcgatgaaataccaccaaattgcata
cagatgaggaacctaatcctctctgcttttcctcgaaatatgagattgcctgatccattc
actccaaatctgaaagtggatctcctagccgagattacgctgcctccccgtgcggttatc
aactacgccactatgataccttcatcgcaattcaagaaggatttggatgcgtatttgaaa
gctcgggcacctgtaactttcctatctgaattgagaggcaacatgcaggtggtgaatgaa
ccaggtcgccgctacaacagccagctcatgaatgctgtcgtgttgtacgtaggcacgcaa
gccattgcgcatatccgctctaagggtcagactccgaatatgtctaccattgcccactct
gcgcacatggatatcttccaaaactttacggttgacttcgattacgaggggaaatatctg
tttctcaacgcaatcgcaaatcaactacgatatccgaacagccacacgcactactttagc
tgctgtcttctgtacttgttcgccgaggcaaactccgaatctgtacaggaacaaattact
cgaatgctgctggagaggctgatagtcaatcggcctcacccatggggcctgctcatcact
ttcattgagctaatcaagaacccgatctacaaattctggtctcacgagtttgttcattgc
gctcctgaaattgaaaagctattcgcatctgtggcacggtcgtgtatcgtagacaaaacg
ggcaccgcagggggcgggcaggagatcgccgagtag
DBGET
integrated database retrieval system
