Choristoneura fumiferana (eastern spruce budworm): 141433539
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Entry
141433539 CDS
T11020
Symbol
pcm
Name
(RefSeq) 5'-3' exoribonuclease pacman isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03008
Ribosome biogenesis in eukaryotes
cfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141433539 (pcm)
09123 Folding, sorting and degradation
03018 RNA degradation
141433539 (pcm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141433539 (pcm)
03009 Ribosome biogenesis [BR:
cfum03009
]
141433539 (pcm)
03016 Transfer RNA biogenesis [BR:
cfum03016
]
141433539 (pcm)
03036 Chromosome and associated proteins [BR:
cfum03036
]
141433539 (pcm)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
141433539 (pcm)
mRNA degradation factors
5'-3' decay
5' exonucleases
141433539 (pcm)
Ribosome biogenesis [BR:
cfum03009
]
Eukaryotic type
Pre-60S particles
RNases
141433539 (pcm)
Transfer RNA biogenesis [BR:
cfum03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
141433539 (pcm)
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Gene silencing
piRNA pathway
141433539 (pcm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
XRN1_D2_D3
XRN1_D1
SH3_12
Mob1_phocein
Motif
Other DBs
NCBI-GeneID:
141433539
NCBI-ProteinID:
XP_073951725
LinkDB
All DBs
Position
12:17899915..17937470
Genome browser
AA seq
1464 aa
AA seq
DB search
MSWSNNIRYQTFDNMYLDMNGIIHNCSHPDDSNPHFRITEEKIFQDIFHYLGILFQIIKP
KKLFFMAIDGVAPRAKMNQQRGRRFRSAREAEKLEEEAKAKGEVLPTEKRFDSNCITPGT
VFMARLHQQLRYFVKHKMSTDPLWSKVKVILSGHETPGEGEHKIMDYIRWARSQPDYDPN
TRHCLYGLDADLIMLGMCTHEPHFALLREEVKFGKTTQRATSPEETNFYLLHLSLLREYL
QQEFIDIKDKLPFQYDIEKIVDDWVLMGFLVGNDFIPNLPNMHISNDAMPLLYKTYMAVL
PTLDGYINEAGDLNLARFEVFMQELAKIDKEKFQDTYADLKYFEGKTGRRPNANERREYK
PNNDDTFNVNVDDIKANKPDDELQALINATQDMFFDDVENDAEEYEETSDEEATFEMEFI
LHKKDYYMNKLDYSAVTEDVLASQAEGYVRAIQWNLFYYYKGCPSWCWYYPHHYAPYISD
IKGFKDLKIEFELGEPFKPFEQLLAVLPSASKHLLPAPFHDLMTDEDSAIVHYYPINFET
DLNGKKNDWEAVVLIPFIDEVNLLSAMAPCYQRLTEEELNRNTHGPMLVYNWTAESLGTV
EAPEYFPAIQECHALEGPIYRRELDVPLHILKRGMLPNAKRDMLYPGFPTMRHLKYKTYL
KKCKVKVFDQPSRNENTMVELIRERAEPPLENVAQDLLGKVIWVGWPHLTKAKVISVSNE
KMRLHHIDKQNNNVNGVASYSTEANSGNLHRQWISERSTIVEHNQNRLGIELGNVSIIVH
AVNLKGYKYLIQDNVQMVLEPEWCSIPCGYAYQAVVADVREHVIQEAGKFSTPQEAYPPG
DKVFLLTAGQYYGCMAQVVDAEAVRSGRIKVQVTEKAEPTPVVNAAIAPYRSANHAAASC
GISAQFLSRITGAILVVTGERNDLPTETQNKVNLGLNLKFNKKNQEVSGYTRRCGIASTW
LYSQRCIDLVKAYERQYPDLFDKLAFSMHNDIFFESDLWPNEMGKNKAQEVQAWLKSQPH
SSAARRECGSEALEPEEMKALAAELDKQLTQMKGSEKTVTLHVKWNLLYKPELHEGNVQP
DPKADFKMYDRVVCVARSITAPFGAKGTITAIYQPPQANTVRLADKLNAEPTYQVMFDEP
FPGASSEQLFEEHRFYRMLPTNMLNISFGRKLRGTVTVAGAQETAQSVNKTPNLLRRNDG
LNSAFASYSPTRDQKTPNSDTQPISNNISVSSDNSSSQDNATQLLRSLLNISQGEMDSQR
KPSKPAPDQNQSWRSRNDNMPGPPPNRPQQQNWRTENGPPRGPPPSSSYSNEWTNRNYKG
QPPVPPYPSFGPFGGPGVQQVPFPAFFQRHPPPRMPPRGPPQTSTPNSMPPMPPMPVQMQ
HPPFGAPNNVEKFNPFVPLQVQTSQRRVHNPAASQSRRAPDGPPALAPAIPFQNTTQQQP
DKASKQPQKKRRPRVAANLPFQIE
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgagctggtcaaacaatatcagataccagactttcgacaacatgtatttagatatgaat
ggtatcatccacaactgctcccaccctgacgactcaaaccctcacttccgtattactgaa
gagaaaatattccaagatatatttcactacttaggaatattgttccaaatcatcaagccg
aagaagctgttcttcatggctattgatggagtcgctcccagggctaagatgaaccagcag
agagggagaagatttagatctgccagggaagcagaaaaattagaagaagaggctaaagca
aagggtgaggttctacccactgagaaacggtttgacagcaactgcatcacaccgggcacg
gtgttcatggcccgtctccaccaacagctgaggtactttgtcaagcacaagatgtccacc
gacccactgtggagcaaagtgaaggtcatactctccggccatgagacgcccggcgagggt
gagcataagataatggactacatccgctgggcgcgatcgcagccggactacgatccaaac
acgcggcactgcctgtacgggctcgacgctgatctcattatgctgggcatgtgcacccat
gagccgcattttgctctgttgagagaggaggtgaaattcggcaaaacgacgcaacgcgcc
acaagccccgaagagaccaatttctacctcctccacttgtcgctccttagagaatatcta
cagcaagaattcatcgatataaaagacaagctgccgttccagtatgatatagagaaaatt
gtggatgactgggtacttatgggatttttggtgggcaacgattttataccgaacttgccc
aatatgcacattagtaatgatgctatgcctctgctgtataagacgtatatggccgtgtta
cctactttagatgggtacataaacgaggcgggcgacttaaacttagctagatttgaagtg
ttcatgcaagaacttgccaagatagataaggaaaagttccaggacacctatgccgatcta
aagtattttgaaggaaagaccggcaggcgccctaatgctaatgagaggagagagtataaa
ccaaacaacgacgacacatttaacgtgaacgtcgacgatataaaagcgaacaagccggat
gatgaattgcaggcgctcatcaacgccactcaggacatgttcttcgatgacgttgaaaat
gacgcagaagaatatgaagaaacaagtgatgaggaggctacgttcgagatggaatttatt
ctccataaaaaagattattatatgaataagttagattattctgccgttaccgaggacgtg
ctagctagccaggcagaaggctacgtccgagctatacaatggaacttgttctattactac
aaggggtgtccctcctggtgttggtactacccccaccactacgcaccctatatctcagat
ataaaaggtttcaaggacctcaagattgaatttgagctgggagaacctttcaaaccgttt
gagcagcttctagcagtattaccgtcggcgagtaaacacttgctgcccgcgccattccac
gatttgatgaccgacgaggattcggccatagtgcactattaccctatcaacttcgagacc
gatttgaacgggaagaaaaacgactgggaggcggtggtgcttataccctttattgatgag
gtaaatctcctatcggcaatggcgccgtgctaccaacggctgacggaagaagaacttaac
aggaatacccacgggccgatgctagtatataattggactgcggaaagcttgggcaccgta
gaagccccggaatacttcccggccatacaggagtgccacgccctagagggacccatatac
aggcgggagttggacgtgccattgcacatactcaaacgtgggatgctgcccaacgcgaaa
cgggacatgctgtacccagggttccccactatgaggcatttgaaatataagacgtacctg
aagaagtgcaaagtgaaagtgttcgaccagccgtctcgcaacgagaacacgatggtggag
ttgataagggagcgcgcggagccacccctggagaatgtggctcaggacttgctgggcaaa
gttatctgggtcgggtggccgcacctcactaaagccaaggttatatcagtgtccaacgaa
aagatgcgcctccaccatatagacaagcaaaataataacgtgaatggtgtggccagttac
agcactgaggctaactcgggcaacttgcaccgacaatggatatctgagaggtctactatt
gtagaacacaatcagaatcgtctcgggatagaattaggaaatgttagtataattgttcac
gctgttaatctaaaaggttacaaataccttattcaagacaacgtccaaatggtgctggag
ccggaatggtgcagcataccctgcggctacgcgtaccaagccgtggtggcggacgtccgg
gagcacgtgatacaggaggcgggcaagttctccacgccacaggaggcctatccgcccggg
gataaggtgttcctgctgaccgctggacagtattacgggtgcatggctcaggtggtggat
gcggaagcggtccgcagcgggcgcatcaaggtgcaagtgacagagaaagcagaaccgacg
cctgttgtaaacgccgccatcgcgccttaccggagcgccaaccacgcagccgcttcttgc
ggtatttcagcgcagttcttgtcgagaataacgggcgccattttggtggtgacaggcgag
agaaacgacctgccaactgaaacgcagaacaaagttaatctagggcttaatttgaagttt
aacaagaagaaccaagaggtctccggctacactcgccgctgcggcatcgccagcacgtgg
ctgtactctcaacgctgcatcgacctcgtcaaagcgtatgaacgccagtacccagacctg
ttcgacaagctggcattctctatgcacaacgatatattcttcgagagcgatctctggcct
aatgaaatggggaaaaacaaagcgcaagaagtccaggcttggctgaagtcccagccgcac
tcgtcggccgcgcgtcgcgagtgcggctccgaggcgctcgagcccgaagagatgaaagcc
ctggctgcggaattggacaagcagctgacgcagatgaaaggatccgagaaaactgtcacg
ctgcatgtcaagtggaacctactgtataagccggaattacacgaaggcaacgtccaaccg
gatcccaaagcagacttcaagatgtacgaccgcgtggtctgcgtggcacggagcataaca
gcgcctttcggagccaaaggcaccataacggcgatataccagccgccgcaggccaatacg
gtccgcttggccgacaagttgaacgccgagccgacgtatcaggtcatgttcgatgagccg
ttcccgggagcgtcgtcggaacagctgtttgaagaacacaggttctatagaatgcttcca
acgaatatgttgaacatatcgttcggtcgcaagctacgcggcacggtaaccgtggccggc
gcgcaggaaaccgcacagagcgtcaacaaaacacctaatctgctgcgacgaaacgacgga
ctcaactcagcgtttgctagctatagtcctacaagagatcaaaagacaccgaacagcgat
acgcaaccaattagcaacaatatcagcgtatcatcggataattcatcatctcaggataac
gccacgcaactgctgaggagtttgctaaatatcagtcaaggggaaatggattctcaaagg
aaaccttcaaagcctgcaccagatcaaaaccaaagttggcgttcgagaaacgacaatatg
ccaggacctccgcctaacagacctcagcagcaaaattggcgcacagaaaatggaccacca
cggggcccgccgccgtcgtcgtcgtattccaatgagtggaccaataggaattacaagggc
cagcccccggtgcctccgtacccgtcgtttggcccgttcggcgggccgggcgtgcagcaa
gtgccgttcccggcgttcttccagcgacaccctcccccgcgaatgcccccccgtgggcct
cctcagacgtcgacgccgaactcgatgccaccgatgcctcccatgccggtgcaaatgcag
cacccgcctttcggcgcgcccaacaacgtcgagaagttcaatccgttcgtgcctttgcaa
gtacaaaccagtcagcgtcgcgtgcacaatcctgcggcgtcgcagagtcggcgtgccccg
gacgggccccccgcgctggcccccgcgatacccttccaaaacaccacgcaacagcagcca
gataaggcatccaagcaaccgcaaaaaaagagaagaccgagagtggctgccaatctacct
ttccaaattgaataa
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