Choristoneura fumiferana (eastern spruce budworm): 141439101
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Entry
141439101 CDS
T11020
Name
(RefSeq) nuclear RNA export factor 2-like
KO
K14284
nuclear RNA export factor
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03008
Ribosome biogenesis in eukaryotes
cfum03013
Nucleocytoplasmic transport
cfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141439101
03015 mRNA surveillance pathway
141439101
03008 Ribosome biogenesis in eukaryotes
141439101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141439101
03009 Ribosome biogenesis [BR:
cfum03009
]
141439101
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
141439101
mRNA cycle factors
Stress granule specific factors
141439101
Ribosome biogenesis [BR:
cfum03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
141439101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NXF_NTF2
LRR_NXF1-5
LRR_4
DUF3219
TAP_C
UBA_4
UBA_8
Motif
Other DBs
NCBI-GeneID:
141439101
NCBI-ProteinID:
XP_073959336
LinkDB
All DBs
Position
20:10260479..10267847
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AA seq
555 aa
AA seq
DB search
MNTRQTQRLESYKKFLLNRNTASSTVVAYIENCVVTEDEAAKHSFHKVMVHNWPDTDIML
FDTLSDYFQTSLIPVNYTSQGEITTFYTSSLNFITKVIKFDFMFPYKRNMFNLDLLFNDR
TSTDCFGSRMTVDDVVAGVVSSRLNDKMILNLSNFCTDPEFAEKKINFYKLSLLSYYKIL
MIRMGRDTRCLDLSNNNLSTVPVEILNFFIKGDLIEINLSNNNIPSLSELQRISSKIEKL
WIEGNPLCEETDPLAYVKQIVMRFPRVTELDGVTLNRHGVMLPFFKNFLETPDRRTKMLV
EKFLTLYFANYDSTRSKVSTFYDVRCTLTLNTSFTDAEDKEMFAYSSHARNILHPVKRNL
VLTHNKLFRCRDAAMTVLMRLPKSEHDPTTFCVDVLKHDKKTLILVVDGIYREKSFDVNI
PERYYQFRRTFVFSIYVLNSNSVYHITNEMFTVSFATKEQIENSFKTQIRNLNSLALIDP
ESEETEAISRAFGYLTQLKKTEVELRLKIHNWDIQSAVKEFYTEMSKNKITPDKFIQNDF
EDFSDTSSLMDDDID
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaagacaaacgcagcgattagaaagttataaaaagtttttactgaacagaaac
acagcctcgtcgactgtcgtagcatacatcgagaactgtgtagttaccgaagatgaagcc
gctaaacattcatttcacaaagttatggttcacaactggcctgacactgatataatgctc
ttcgatactctaagcgattacttccagacatcactcatccctgtaaactacacatctcaa
ggggaaataaccacattttacacaagcagcctcaattttataacaaaggttataaagttt
gactttatgttcccatacaaaaggaacatgtttaatctggacttattgtttaatgatcgg
acatccacggattgttttggcagccggatgacagtggatgacgtggtggctggtgtggtc
agtagtagactaaatgacaagatgatattaaatttgtccaacttctgtactgatccagaa
tttgctgaaaaaaagattaatttctacaaactcagcctgctgtcatattacaaaatcctc
atgattcgtatgggaagagacaccagatgcttagacttgagtaataataatttaagtaca
gtaccagttgagattctgaacttctttataaagggagacttgattgaaattaatctcagc
aacaataatattccatcactgtcagagttacaaagaatcagcagtaagattgagaagcta
tggattgaaggcaacccattgtgcgaggagacagaccctctggcatatgtcaagcagatt
gtcatgaggttcccgcgggtgactgaacttgatggtgtaaccttaaaccgacacggcgta
atgttgccattcttcaagaatttcctggaaacacctgacaggcggacgaaaatgctggtc
gaaaagtttttgactttgtacttcgctaattacgattccacgcgaagcaaagttagtact
ttctacgacgtcaggtgtactttgactttgaacacgtcgtttactgatgcggaagacaaa
gagatgttcgcgtactcttcacacgcacgcaacatcctacaccccgtcaaacgtaatcta
gtcttgacccataacaaactgtttcggtgtcgcgatgccgccatgacggtactaatgcga
cttcctaagtccgaacacgaccccacgacgttctgcgtcgacgtactgaaacatgacaaa
aagaccctgatactagtggtggatggcatatatcgggagaaatcgttcgatgtgaacatt
ccagagcgttactaccagttccgacgcactttcgtgtttagcatatacgtgctcaattcc
aactccgtgtaccacatcactaatgaaatgttcaccgtatcatttgccactaaggagcag
atcgagaatagctttaagactcaaataagaaatttgaattccctagcgctcatcgacccg
gagtcagaagaaactgaggcaattagcagagcatttggatacctcacacagcttaaaaag
acggaggtcgaattgcgtctcaagatccacaactgggacattcagagcgccgttaaagaa
ttttacactgaaatgtcaaaaaataaaataacccccgacaagtttattcaaaatgatttc
gaagacttctcagatacttcatctctgatggatgacgatattgactga
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