Campylobacter fetus subsp. venerealis 84-112: CSG_8830
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Entry
CSG_8830 CDS
T03740
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cfz
Campylobacter fetus subsp. venerealis 84-112
Pathway
cfz03030
DNA replication
cfz03410
Base excision repair
cfz03420
Nucleotide excision repair
cfz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CSG_8830
03410 Base excision repair
CSG_8830
03420 Nucleotide excision repair
CSG_8830
03430 Mismatch repair
CSG_8830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfz03032
]
CSG_8830
03400 DNA repair and recombination proteins [BR:
cfz03400
]
CSG_8830
Enzymes [BR:
cfz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CSG_8830
DNA replication proteins [BR:
cfz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CSG_8830
DNA repair and recombination proteins [BR:
cfz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CSG_8830
NER (nucleotide excision repair)
GGR (global genome repair) factors
CSG_8830
MMR (mismatch excision repair)
DNA ligase
CSG_8830
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CSG_8830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PDZ_1
Motif
Other DBs
NCBI-ProteinID:
CDF64794
LinkDB
All DBs
Position
866841..868778
Genome browser
AA seq
645 aa
AA seq
DB search
MDKNDYLKAVDSLNLWAKAYYTDDSPMASDDEYDKLYNAVVQFEKENPDLKLSYSPTNRI
GGEILDEFKKISHIEKMWSMEDIFSDSELVAWISRGDKTDCEFFAEPKFDGASLNLLYEN
GNLISAATRGDGSVGEDVTNNAKVISSVPLQIDYKDKIEIRGEVVITKDDFELINIERSK
NSEPPLANPRNAAAGSLRQLDNGIVKQRKLKFYPWGVGENSLKFNKHSQIMDFVRSLGFL
HDNFCKVIRGIDELKIAYKELLSVRELKPILMDGMVIRVNDLSKANQLGYTVKFPKFMVA
YKFPATEKTARLIDILLQVGRTGVVTPVGLLDGVLIDGAFIKNVTLHNFDEIDRLNLMKN
DFVTVIRSGDVIPKITGVFKDRRDGSQSEIIRPKICPECGNELLDEGVFIKCQNLTCKAR
VVSSITYFASKKCMNIDGLGDAIVELLYQKNIIKDIADIYRLDELSFIGLEGFKTKKISN
LLSAINNSKTPNLDKFIASLGIEHIGEVAAKKIANNYGDRWLELTLEELLALDGFGEAMA
LSYLEFMRVNLEKIKELLEFITPKMQNLELKTNIFSGKTVVITGTLSRSRDEFKAELESY
GAKVSSSVSKKTDFVLYGNEAGSKLEKANELGVRAIDESEYESLK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaatgattatttaaaagcagtcgatagtttaaatttatgggcaaaggcttat
tataccgatgattctccgatggcgtcagatgatgagtatgacaagctttataacgccgta
gttcagtttgaaaaagaaaatccggatttaaaactctcttactctcctacaaatagaatc
ggtggagagattttagatgagtttaagaagatatctcatatagaaaaaatgtggtccatg
gaggatatatttagtgatagcgagcttgttgcttggatttctagaggagataaaacggat
tgcgagttttttgccgaacctaaatttgatggagctagtttaaatttactttatgaaaac
ggaaatcttataagcgctgctacaagaggcgatggaagcgttggagaagacgtcacgaac
aatgcaaaggtcataagctcagtaccgttgcaaatagactataaagataaaatagaaata
agaggcgaagtcgtcataacaaaagatgattttgaattgataaatattgagcgtagcaaa
aattcagaaccgcctttagcaaatccgagaaacgcagcagccggaagccttagacagctt
gataatggtatagtaaaacagagaaaacttaagttttatccatggggagtcggagagaac
tctttgaaatttaataaacattctcagattatggattttgtaagaagtcttggtttttta
catgataatttttgtaaagtgatcagaggtatcgacgagttaaaaattgcttataaagag
cttttaagtgtaagagagcttaagcctattttgatggacggaatggtaatacgagtaaat
gatttatcaaaagctaatcagcttggttataccgttaaatttccaaaatttatggtagct
tataaatttcctgccactgaaaagactgcaagattgatagatatattgctgcaagtagga
agaacaggagtcgtaactccagtgggattgcttgatggagttttgatagatggtgcgttt
ataaaaaatgtcacgcttcataattttgatgagatagatagattaaatttaatgaaaaat
gactttgttaccgtgataagaagcggagatgtcatacctaagattactggagtatttaaa
gatagaagagacggtagtcaaagtgagataattcgcccaaaaatttgccctgaatgcgga
aacgagcttttagacgaaggtgtttttataaagtgtcaaaatctaacttgcaaagctaga
gtcgtgagttctattacctatttcgcatctaaaaaatgtatgaatatagacggtcttggt
gatgctatagtagagcttttatatcaaaaaaatattattaaagatatcgctgatatttat
aggcttgatgagcttagttttataggtcttgagggatttaaaactaaaaaaatttcaaat
ttattatcggctattaataactctaaaactccaaatttagataaatttatagcgtcttta
ggcatcgaacatataggcgaagttgccgctaaaaaaatagcaaataattatggagatagg
tggcttgaattaactcttgaagagcttttagctttagacggatttggtgaagctatggct
cttagttatcttgagtttatgagagtaaatttagaaaaaataaaagaacttttagaattt
atcactccaaaaatgcaaaatttagagttaaaaacaaatatattttcaggaaaaacagta
gttataacaggtactttgtctcgctctagagatgagttcaaagcagaactagaaagttat
ggtgctaaagtatctagctcggtgtctaaaaaaacggatttcgtattatatggaaatgaa
gccggaagtaagctagaaaaagcaaatgaattaggcgtaagagcaatagatgagagtgag
tatgaaagtttaaaatga
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