Cellulomonas gilvus: Celgi_0617
Help
Entry
Celgi_0617 CDS
T01537
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cga
Cellulomonas gilvus
Pathway
cga03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Celgi_0617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cga03400
]
Celgi_0617
Enzymes [BR:
cga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Celgi_0617
DNA repair and recombination proteins [BR:
cga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Celgi_0617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AEI11137
UniProt:
F8A6S7
LinkDB
All DBs
Position
673073..676687
Genome browser
AA seq
1204 aa
AA seq
DB search
MDLTGLLPALLADPAAAAALAALPARGEVDVVGPAGIRPPLLAALAGAVPGSRGRPLVVT
TATGRDADELADALRCYLPDDDVAVLPAWETLPHERLSPRADTVARRLAVFRRLAHPTPE
PGPAGPIRVLVVPVRALLQPVVEGLGELRPVEVAVGDRVDLEELTHRLVDAAYSRVDMVE
KRGEFAVRGGILDVFPPTESHPLRVELWGEDVEEIRWFSVADQRSLEVADHGLWAPPCRE
ILLTDAVRERAAALVPQLPGAIDMLDKLAAGIAVEGMESLAPALVERMVPVLDLVPDDAL
LVLADPERIRRRAHDLVATTQEFLEAAWTSAAAGAATPLDLSAASFATFAEVRALAAVRG
LGWWTLSGFTLDAGADDEGADAPVRETDGVETLVVAARDVERYRGEVARAVADVRALQQA
GWRLLLATEGHGPAQRMVEQLRAADCPARLVATIDQEPEGGVVLVTPAPVGPGFVAEGLR
LAVLSESDLTGRTGSSTRDMRRMPSRRRNVVDPLALRPGDFVVHEQHGVGRFVELVQRTV
GSGASAATREYLVIEYASSKRGQPGDRLYVPTDQLDQVTKYVGGEAPSLNKMGGTDWAKT
KGRARKAVKEIASELIRLYSARMATPGHAFGPDTPWQRELEDAFAYVETPDQAATIDEVK
ADMEKSIPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHLDTFTERY
SAFPVTVKALSRFQTAKESQAIVDGLADGSVDIVIGTHRLITGNVRFKDLGLVVIDEEQR
FGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGAY
EEKQISAAIRRELLREGQVFYVHNRVESIERTASRLNELVPEARIAVAHGKMGEHQLEQV
IVDFWEKRFDVLVCTTIVETGLDISNANTLILERADLLGLSQLHQLRGRVGRGRERAYAY
FLYPPEKPLTETAHDRLQTIAANTDLGAGMAVAMKDLEIRGAGNLLGGEQSGHIEGVGFD
LYIRMVGEAVASFRDDVPEELPDVTIELPVDAHIPHDYIAHERLRLEAYRKVAVGADDAA
LAEVRAELVDRYGPVPAAVDNLFEVAQFRNHARSAGLTDITAQGKFVRFAPVELPESAQL
RLKRLYPGSIVKPAVRTALVPFPTTARIGGKPLHGAALLTWCRQFIDAIVRGDVSTAAQV
GTTR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggacctgaccggcctcctgcccgccctgctcgccgacccggccgccgccgcggccctc
gccgccctgcccgcgcgtggcgaggtggacgtcgtcggtcccgcgggcatccggccgccg
ctgcttgccgcgctggccggcgcggtccccggcagccgcgggcgcccgctggtcgtgacc
accgccacgggacgcgacgccgacgagctcgcggacgcgctgcgctgctacctcccggac
gacgacgtcgcggtgctccccgcgtgggagacgctgccgcacgagcgcctgtcgccgcgc
gcggacacggtcgcgcggcgcctcgcggtgttccgcaggcttgcgcaccccacacccgag
ccggggcccgcggggccgatccgcgtgctggtggtccccgtgcgcgcgctgctgcagccg
gtggtcgagggactcggggagctgcgacccgtcgaggtcgcggtcggcgaccgcgtcgac
ctcgaggagctcacgcaccggctggtcgacgcggcgtactcacgcgtggacatggtcgag
aagcgcggcgagttcgcggtgcgcggcgggatcctggacgtgttcccgcccaccgagtcc
cacccgctgcgcgtcgagctgtggggcgaggacgtcgaggagatccggtggttctcggtc
gcggaccagcgttcgctcgaggtcgcggaccacgggctgtgggcgccgccgtgccgcgag
atcctgctgaccgacgcggtgcgcgagcgggccgcggcgctcgtgccgcagctgcccggc
gcgatcgacatgctcgacaagctggccgccgggatcgcggtcgagggcatggagtcgctc
gcgcccgcgctcgtggagcgcatggtccccgtgctggacctggtccccgacgacgcgctg
ctggtgctcgcggacccggagcgcatccgccgccgcgcgcacgacctggtggcgaccacg
caggagttcctcgaggccgcgtggacgtcggccgccgcgggtgccgcgacgccgctcgac
ctgtccgccgcgtcgttcgcgacgttcgccgaggtgcgtgcgctcgccgcggtgcgcggc
ctgggctggtggacgctgtcgggcttcacgctcgacgcgggcgcggacgacgagggcgcg
gacgccccggtgcgcgagacggacggggtggagacgctcgtcgtggccgcgcgggacgtc
gagcggtaccgcggcgaggtcgcgcgggccgtcgccgacgtgcgcgcgctccagcaggcc
gggtggcgcctgctcctggcgaccgagggccacggcccggcgcagcgcatggtcgagcag
ctgcgtgccgcggactgccccgcgcggctcgtcgcgaccatcgaccaggagcccgagggc
ggtgtcgtcctcgtcacgcccgcacccgtgggtccgggcttcgtcgccgagggcctgcgg
ctcgcggtgctgtccgagtccgacctcacgggccgcacgggatcctcgacgcgagacatg
cgacgcatgccctcgcgccggcgcaacgtcgtcgaccccctcgcgctgcgccccggggac
ttcgtggtgcacgagcagcacggcgtgggccggttcgtcgagctggtgcagcgcacggtc
ggctcgggcgcctcggccgccacgcgcgagtacctggtcatcgagtacgcgtccagcaag
cgcggccagccgggggaccggctgtacgtcccgacggaccagctcgaccaggtgaccaag
tacgtgggcggtgaggcgccgagcctcaacaagatgggcggcaccgactgggccaagacc
aagggccgcgcgcgcaaggcggtcaaggagatcgcctcggagctgatccgcctgtactcg
gcgcgcatggccacgcccgggcacgcgttcggcccggacacgccgtggcagcgcgagctc
gaggacgcgttcgcgtacgtcgagacgccggaccaggccgcgacgatcgacgaggtcaag
gccgacatggagaagtcgatcccgatggaccggctggtctgcggggacgtcgggtacggc
aagaccgagatcgcggtgcgcgccgcgttcaaggccgtgcaggacggcaagcaggtcgcg
gtgctggtcccgacgaccctgctggtccagcagcacctcgacacgttcacggagcgttac
tcggcgttccccgtgacggtcaaggcgctgtcccggttccagaccgccaaggagagccag
gcgatcgtcgacgggctcgcggacgggtccgtggacatcgtgatcggcacgcaccgcctg
atcaccggcaacgtccggttcaaggacctgggcctggtggtgatcgacgaggagcagcgg
ttcggcgtcgagcacaaggagacgctcaaggcgctgcgcaccaacgtggacgtcctggcc
atgagcgccacgcccatcccgcgcacgctcgagatggccgtgacgggcatccgggagatg
tcgacgctcgcgaccccgcccgaggagcggcaccccgtcctgacgttcgtcggggcgtac
gaggagaagcagatctccgccgcgatccgccgggagctgctgcgcgagggacaggtgttc
tacgtgcacaaccgcgtcgagtcgatcgagcggacggcgtcgcggctcaacgagctggtg
cccgaggcccgcatcgcggtcgcgcacgggaagatgggcgagcaccagctcgagcaggtc
atcgtcgacttctgggagaagcggttcgacgtgctggtctgcacgaccatcgtcgagacc
ggcctcgacatctccaacgccaacacgctgatcctcgagcgcgcggacctgctgggcctg
tcgcagctgcaccagctgcggggccgcgtcggccgcgggcgcgagcgcgcctacgcgtac
ttcctgtacccgcccgagaagcccctcaccgagaccgcgcacgaccgtctgcagaccatc
gcggccaacaccgacctgggtgcgggcatggccgtggcgatgaaggacctcgagatccgc
ggcgccggcaacctgctgggcggcgagcagtccgggcatatcgagggcgtgggcttcgac
ctgtacatccgcatggtcggcgaggccgtcgcgtccttccgcgacgacgtgcccgaggag
ctgcccgacgtcacgatcgagctgcccgtcgacgcgcacatcccgcacgactacatcgcg
cacgagcggctgcgcctcgaggcgtaccgcaaggtcgcggtgggtgcggacgacgccgcg
ctcgccgaggtccgcgccgagctcgtcgaccgctacggccccgtgcccgccgcggtggac
aacctgttcgaggtcgcgcagttccgcaaccacgcgcgctcggccgggctgacggacatc
acggcgcagggcaagttcgtgcgcttcgcccccgtcgagctgcccgagtccgcgcagctg
cggctcaagcgcctctacccgggctcgatcgtcaagcccgcggtgcgcaccgcgctcgtg
ccgttcccgacgaccgcgcgcatcggtggcaagcccttgcacggggccgctctgctcacc
tggtgccgccagttcatcgacgcgatcgtccggggtgacgtctcgaccgccgcccaggtc
ggcaccacccgctga
DBGET
integrated database retrieval system