KEGG   Cellulomonas gilvus: Celgi_0617
Entry
Celgi_0617        CDS       T01537                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
cga  Cellulomonas gilvus
Pathway
cga03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Celgi_0617
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cga03400]
    Celgi_0617
Enzymes [BR:cga01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Celgi_0617
DNA repair and recombination proteins [BR:cga03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      Celgi_0617
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF CarD_TRCF_RID Helicase_C ResIII UB2H RecG_dom3_C AAA_22 MFD_D3
Other DBs
NCBI-ProteinID: AEI11137
UniProt: F8A6S7
LinkDB
Position
673073..676687
AA seq 1204 aa
MDLTGLLPALLADPAAAAALAALPARGEVDVVGPAGIRPPLLAALAGAVPGSRGRPLVVT
TATGRDADELADALRCYLPDDDVAVLPAWETLPHERLSPRADTVARRLAVFRRLAHPTPE
PGPAGPIRVLVVPVRALLQPVVEGLGELRPVEVAVGDRVDLEELTHRLVDAAYSRVDMVE
KRGEFAVRGGILDVFPPTESHPLRVELWGEDVEEIRWFSVADQRSLEVADHGLWAPPCRE
ILLTDAVRERAAALVPQLPGAIDMLDKLAAGIAVEGMESLAPALVERMVPVLDLVPDDAL
LVLADPERIRRRAHDLVATTQEFLEAAWTSAAAGAATPLDLSAASFATFAEVRALAAVRG
LGWWTLSGFTLDAGADDEGADAPVRETDGVETLVVAARDVERYRGEVARAVADVRALQQA
GWRLLLATEGHGPAQRMVEQLRAADCPARLVATIDQEPEGGVVLVTPAPVGPGFVAEGLR
LAVLSESDLTGRTGSSTRDMRRMPSRRRNVVDPLALRPGDFVVHEQHGVGRFVELVQRTV
GSGASAATREYLVIEYASSKRGQPGDRLYVPTDQLDQVTKYVGGEAPSLNKMGGTDWAKT
KGRARKAVKEIASELIRLYSARMATPGHAFGPDTPWQRELEDAFAYVETPDQAATIDEVK
ADMEKSIPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHLDTFTERY
SAFPVTVKALSRFQTAKESQAIVDGLADGSVDIVIGTHRLITGNVRFKDLGLVVIDEEQR
FGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGAY
EEKQISAAIRRELLREGQVFYVHNRVESIERTASRLNELVPEARIAVAHGKMGEHQLEQV
IVDFWEKRFDVLVCTTIVETGLDISNANTLILERADLLGLSQLHQLRGRVGRGRERAYAY
FLYPPEKPLTETAHDRLQTIAANTDLGAGMAVAMKDLEIRGAGNLLGGEQSGHIEGVGFD
LYIRMVGEAVASFRDDVPEELPDVTIELPVDAHIPHDYIAHERLRLEAYRKVAVGADDAA
LAEVRAELVDRYGPVPAAVDNLFEVAQFRNHARSAGLTDITAQGKFVRFAPVELPESAQL
RLKRLYPGSIVKPAVRTALVPFPTTARIGGKPLHGAALLTWCRQFIDAIVRGDVSTAAQV
GTTR
NT seq 3615 nt   +upstreamnt  +downstreamnt
atggacctgaccggcctcctgcccgccctgctcgccgacccggccgccgccgcggccctc
gccgccctgcccgcgcgtggcgaggtggacgtcgtcggtcccgcgggcatccggccgccg
ctgcttgccgcgctggccggcgcggtccccggcagccgcgggcgcccgctggtcgtgacc
accgccacgggacgcgacgccgacgagctcgcggacgcgctgcgctgctacctcccggac
gacgacgtcgcggtgctccccgcgtgggagacgctgccgcacgagcgcctgtcgccgcgc
gcggacacggtcgcgcggcgcctcgcggtgttccgcaggcttgcgcaccccacacccgag
ccggggcccgcggggccgatccgcgtgctggtggtccccgtgcgcgcgctgctgcagccg
gtggtcgagggactcggggagctgcgacccgtcgaggtcgcggtcggcgaccgcgtcgac
ctcgaggagctcacgcaccggctggtcgacgcggcgtactcacgcgtggacatggtcgag
aagcgcggcgagttcgcggtgcgcggcgggatcctggacgtgttcccgcccaccgagtcc
cacccgctgcgcgtcgagctgtggggcgaggacgtcgaggagatccggtggttctcggtc
gcggaccagcgttcgctcgaggtcgcggaccacgggctgtgggcgccgccgtgccgcgag
atcctgctgaccgacgcggtgcgcgagcgggccgcggcgctcgtgccgcagctgcccggc
gcgatcgacatgctcgacaagctggccgccgggatcgcggtcgagggcatggagtcgctc
gcgcccgcgctcgtggagcgcatggtccccgtgctggacctggtccccgacgacgcgctg
ctggtgctcgcggacccggagcgcatccgccgccgcgcgcacgacctggtggcgaccacg
caggagttcctcgaggccgcgtggacgtcggccgccgcgggtgccgcgacgccgctcgac
ctgtccgccgcgtcgttcgcgacgttcgccgaggtgcgtgcgctcgccgcggtgcgcggc
ctgggctggtggacgctgtcgggcttcacgctcgacgcgggcgcggacgacgagggcgcg
gacgccccggtgcgcgagacggacggggtggagacgctcgtcgtggccgcgcgggacgtc
gagcggtaccgcggcgaggtcgcgcgggccgtcgccgacgtgcgcgcgctccagcaggcc
gggtggcgcctgctcctggcgaccgagggccacggcccggcgcagcgcatggtcgagcag
ctgcgtgccgcggactgccccgcgcggctcgtcgcgaccatcgaccaggagcccgagggc
ggtgtcgtcctcgtcacgcccgcacccgtgggtccgggcttcgtcgccgagggcctgcgg
ctcgcggtgctgtccgagtccgacctcacgggccgcacgggatcctcgacgcgagacatg
cgacgcatgccctcgcgccggcgcaacgtcgtcgaccccctcgcgctgcgccccggggac
ttcgtggtgcacgagcagcacggcgtgggccggttcgtcgagctggtgcagcgcacggtc
ggctcgggcgcctcggccgccacgcgcgagtacctggtcatcgagtacgcgtccagcaag
cgcggccagccgggggaccggctgtacgtcccgacggaccagctcgaccaggtgaccaag
tacgtgggcggtgaggcgccgagcctcaacaagatgggcggcaccgactgggccaagacc
aagggccgcgcgcgcaaggcggtcaaggagatcgcctcggagctgatccgcctgtactcg
gcgcgcatggccacgcccgggcacgcgttcggcccggacacgccgtggcagcgcgagctc
gaggacgcgttcgcgtacgtcgagacgccggaccaggccgcgacgatcgacgaggtcaag
gccgacatggagaagtcgatcccgatggaccggctggtctgcggggacgtcgggtacggc
aagaccgagatcgcggtgcgcgccgcgttcaaggccgtgcaggacggcaagcaggtcgcg
gtgctggtcccgacgaccctgctggtccagcagcacctcgacacgttcacggagcgttac
tcggcgttccccgtgacggtcaaggcgctgtcccggttccagaccgccaaggagagccag
gcgatcgtcgacgggctcgcggacgggtccgtggacatcgtgatcggcacgcaccgcctg
atcaccggcaacgtccggttcaaggacctgggcctggtggtgatcgacgaggagcagcgg
ttcggcgtcgagcacaaggagacgctcaaggcgctgcgcaccaacgtggacgtcctggcc
atgagcgccacgcccatcccgcgcacgctcgagatggccgtgacgggcatccgggagatg
tcgacgctcgcgaccccgcccgaggagcggcaccccgtcctgacgttcgtcggggcgtac
gaggagaagcagatctccgccgcgatccgccgggagctgctgcgcgagggacaggtgttc
tacgtgcacaaccgcgtcgagtcgatcgagcggacggcgtcgcggctcaacgagctggtg
cccgaggcccgcatcgcggtcgcgcacgggaagatgggcgagcaccagctcgagcaggtc
atcgtcgacttctgggagaagcggttcgacgtgctggtctgcacgaccatcgtcgagacc
ggcctcgacatctccaacgccaacacgctgatcctcgagcgcgcggacctgctgggcctg
tcgcagctgcaccagctgcggggccgcgtcggccgcgggcgcgagcgcgcctacgcgtac
ttcctgtacccgcccgagaagcccctcaccgagaccgcgcacgaccgtctgcagaccatc
gcggccaacaccgacctgggtgcgggcatggccgtggcgatgaaggacctcgagatccgc
ggcgccggcaacctgctgggcggcgagcagtccgggcatatcgagggcgtgggcttcgac
ctgtacatccgcatggtcggcgaggccgtcgcgtccttccgcgacgacgtgcccgaggag
ctgcccgacgtcacgatcgagctgcccgtcgacgcgcacatcccgcacgactacatcgcg
cacgagcggctgcgcctcgaggcgtaccgcaaggtcgcggtgggtgcggacgacgccgcg
ctcgccgaggtccgcgccgagctcgtcgaccgctacggccccgtgcccgccgcggtggac
aacctgttcgaggtcgcgcagttccgcaaccacgcgcgctcggccgggctgacggacatc
acggcgcagggcaagttcgtgcgcttcgcccccgtcgagctgcccgagtccgcgcagctg
cggctcaagcgcctctacccgggctcgatcgtcaagcccgcggtgcgcaccgcgctcgtg
ccgttcccgacgaccgcgcgcatcggtggcaagcccttgcacggggccgctctgctcacc
tggtgccgccagttcatcgacgcgatcgtccggggtgacgtctcgaccgccgcccaggtc
ggcaccacccgctga

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