Clarias gariepinus (North African catfish): 128510915
Help
Entry
128510915 CDS
T10780
Symbol
cntn1a
Name
(RefSeq) contactin-1a isoform X1
KO
K06759
contactin 1
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04514
Cell adhesion molecule (CAM) interaction
cgar04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
128510915 (cntn1a)
04517 IgSF CAM signaling
128510915 (cntn1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cgar04515
]
128510915 (cntn1a)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cgar00537
]
128510915 (cntn1a)
Cell adhesion molecules [BR:
cgar04515
]
Immunoglobulin superfamily
Contactins
128510915 (cntn1a)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
cgar00537
]
Others
128510915 (cntn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
FN3_DSCAM-DSCAML_C
V-set_CD47
Pur_ac_phosph_N
Sp38
Interfer-bind
Fn3_VIN3
PAXX
Motif
Other DBs
NCBI-GeneID:
128510915
NCBI-ProteinID:
XP_053339431
LinkDB
All DBs
Position
2:complement(28560948..28642972)
Genome browser
AA seq
1022 aa
AA seq
DB search
MYHPTPLLLALSLALCSSPADGEVPGIFDDSSGYGPVFEEQPIDTIYPEESQEDKIIMSC
RARASPPATYKWKLNSWDIEIPEQGNNHYSLMGGNLVISNPDKSTHAGNYSCLATNKFGT
IISREASIQFGYLDMFSTEEREAVRVREGQGVVLLCAPPPHFPDDLTFRWMLNEFPIFVP
LDKRRFVSQTTGNLYIAKVEASDSGNYSCFVSSLSIAKSVFSKFIPLVPQTERGSVRKYA
ADIKVKFPDTYALVGQNITLECFALGNPIPQIRWRKVDGALPVHHEISMAGGLLHLFNVQ
YEDEGVYECEALNSKGKDWHKANLFVEAAPEWVEHISSSERDIGSDYTMSCVTSGKPKPH
VHFLKDGHMYGKHELHFTDLTPDDSGMYQCIAENRHGVIHANAELRVFVGAPSFELNPVK
QRLLGAKNSRVVIECKPKAAPRPTLSWSKSTELLSNSSRIFIWEDGSLEIHNVSKSDEGK
YTCFAENDRGKANSTGSLSVTDATKITLAPSNADVSVGEKARMQCGASHDSSLDITFIWS
LNGHVIDFDKEEEYYQHTIDSQAGLSSCELLIKKTQLKHAGLYTCTAQTPVDNVTVSADL
VVRGPPGAPGGVRVEEPGVKSVKLLWSHGTDNLSPISKYTIQYRETRTQEDWKDAVTSPH
NVEGNAEMATVVDLSPWTEYEFRVIATNTLGTGEPSEPSSKITTLEAAPVVAPSDVGGGG
GTSRELIITWTPVPPQYYYGSNFGYIIAFKPQGSSEWHRVTIADPHTSRYIHKDPSIPAA
TKFDVKVQAFNHAGEGPYSLTATIYSAQDAPTEAPIITEARTLSATDAIVYWRPITQQTV
EGYQVRYWRKSVENESSAQRISSRDNQTRLDNLKPNSLYVIEVRAFNGAGYGPTSQRYEI
YTKKAPPSRPPKIIGTRVYSSGTLVNVAWQHVEAFANESSVESYKVLYRQEGHSTGTLYT
TNKQFIDLPFHKDGDYVVEVRAQSKGGDGAVAQVRISAGGVLSAPSLSLCVLLLVALLSL
TI
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgtatcatcccacgcctctcctgctcgctctgtcactcgcactctgctccagtcctgca
gatggtgaagttcctggcatctttgacgattcctcgggctatggacctgtctttgaggag
cagccaattgacaccatctaccccgaggagtctcaggaggacaagataatcatgagttgc
agagcacgagccagcccacctgccacatacaagtggaagctgaatagctgggacattgag
atcccggagcagggtaacaaccactacagcctgatgggaggaaatctggtcatcagcaat
cctgataagagcacccatgctgggaattactcctgcctggcaacaaacaagttcggcacc
atcatcagtcgagaggcgtctattcagtttggatatctcgacatgttttccacagaagaa
agagaagctgttcgtgtgagagagggtcagggagtggtgctgttatgtgctcctcctcca
catttcccagatgaccttaccttccgctggatgctgaatgaatttcccatttttgtcccg
ctggataagagacgctttgtctcccagaccacaggaaatctctacattgctaaagtagag
gcttccgacagtggcaactactcctgcttcgtctccagcttatctatcgctaagagtgtc
ttcagcaagtttatccctttagtcccacagactgaacgaggttctgttcggaagtatgca
gccgatataaaagtgaagtttccggacacgtatgcgcttgttggacagaacatcaccctg
gagtgtttcgcattaggaaatcccattccgcagatccgatggaggaaggtggacggggca
ctgcctgtccaccatgagatcagcatggcaggtggacttctgcacctctttaatgtgcaa
tatgaggacgagggggtttatgagtgtgaggctctcaactctaaaggcaaagactggcac
aaagcaaacctctttgtggaagctgctccagaatgggtggagcacatcagcagtagcgag
agggacattggaagtgactacaccatgtcctgcgtaaccagcggaaagcccaaacctcat
gtacacttcttaaaggatggccatatgtatggaaagcatgagttgcacttcacagacctg
acacctgatgactctgggatgtatcagtgcattgctgagaaccgccatggagtgattcat
gccaatgctgaactgcgagtctttgtgggcgctccttcatttgagctcaacccagttaag
cagaggctgcttggagcgaagaacagccgtgtagtaattgagtgcaaacctaaagcggca
cccagacccacgttatcctggagcaaaagcacagagctgctctctaattccagcaggatt
ttcatttgggaggacgggagtctggagatccacaacgtttcaaagtcagatgaggggaag
tacacatgctttgctgagaatgacagaggcaaagccaacagcactggatctctctctgtc
acagatgccactaagatcacgctggctccctctaacgctgatgtcagcgtgggtgaaaaa
gctaggatgcagtgtggtgcttcacatgattcgagcctcgacatcacctttatctggtct
cttaacggccatgtcattgactttgacaaggaggaagaatactaccagcacaccattgat
agtcaggcaggtttgtctagctgtgagctgctgattaagaagactcagctgaaacacgca
ggcctctacacctgcacagcccagacgccagtggacaatgtcaccgtctctgctgacctg
gtagtgagaggccctccgggagctccaggaggagtgcgtgtggaggagcccggggtaaag
tctgtgaagcttctctggagtcatggcacagataatctcagccccatatccaaatacacc
atccagtacagggagaccagaacccaggaggattggaaagatgctgtaacatctcctcat
aatgtagaaggaaacgcagagatggccacagtagttgatttgtctccttggactgaatat
gagtttcgagtcattgctacaaacactctgggtacaggagaaccgagtgagccctcaagc
aaaatcaccacactggaagcagctcctgtggtggcaccatcagatgtaggaggaggtggg
ggaacgagtagagagctcatcattacatggacgcctgttccgccacagtactactacgga
agtaacttcggctacattattgcatttaagcctcagggtagctctgagtggcacagagtg
acaatagctgaccctcacaccagtcgctacatccacaaagatccttctattcctgcagcc
acaaaatttgatgtgaaagtacaggcctttaaccatgcaggcgagggaccctacagcctc
actgctactatatactctgctcaggatgcacccacagaggctccaatcatcacggaggcc
agaaccctgtcagcgacggacgccattgtgtattggcgacccatcacgcagcagacagtc
gagggctatcaggtgaggtactggaggaagtctgtggagaatgaatcgtcagcgcagcgc
atctccagtagagacaaccagacacgcctggacaacttaaagcctaactccctttatgtt
attgaagtgcgtgcattcaatggtgcaggttatggaccaacaagccagagatatgagatc
tatacaaagaaagcacctccaagtcgaccaccaaaaataatcggcacaagggtgtattcc
agtggaaccttagtcaacgttgcctggcagcatgtggaggcttttgccaatgagtctagt
gtggaaagctataaggtgctatatagacaggagggtcacagcactgggacactgtacacc
acaaataagcagttcatagacctgccctttcacaaagatggagattatgttgtggaggtg
agggcacagagcaagggaggagatggagctgtggctcaagtgcggatctcagccggagga
gttttgtcagccccatccctgagcctttgtgtcctgctgctggtggcattgcttagcctg
actatctga
DBGET
integrated database retrieval system
