Clarias gariepinus (North African catfish): 128515909
Help
Entry
128515909 CDS
T10780
Name
(RefSeq) sphingosine kinase 1-like
KO
K04718
sphingosine kinase [EC:
2.7.1.91
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar00600
Sphingolipid metabolism
cgar01100
Metabolic pathways
cgar04020
Calcium signaling pathway
cgar04148
Efferocytosis
cgar04370
VEGF signaling pathway
cgar04371
Apelin signaling pathway
Module
cgar_M00100
Sphingosine degradation
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
128515909
09130 Environmental Information Processing
09132 Signal transduction
04370 VEGF signaling pathway
128515909
04371 Apelin signaling pathway
128515909
04020 Calcium signaling pathway
128515909
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
128515909
Enzymes [BR:
cgar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.91 sphingosine kinase
128515909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAGK_cat
YegS_C
Motif
Other DBs
NCBI-GeneID:
128515909
NCBI-ProteinID:
XP_053346138
LinkDB
All DBs
Position
28:5066216..5076710
Genome browser
AA seq
543 aa
AA seq
DB search
MDGDGGAELRAEFTDAATGRLRFSVTLTHSRLSVRRLGGPGSPVWQQGQELALGDCVGCR
ACRSEDEADAAAYLSVYLYPVRRGWTGAPSGRQRVEHRFRVLTAGDARANLGEAERWARA
VRHRAAQHGQALRDGIEFNRVCVRRRMMVLVNPQSGRGQAMSLYTGPVLSMLTEANISHT
LITTEHQNHARELVRSADLSEWSAIVILSGDGLLFEVINGLMEREDWDEAIRTPLGILPG
GSGNALAASVHHYTQASPALGEDLLLSCCFLLCKGLVCPLDIVSVRLSTGPRLFSFLSLA
WGFVADVDIESEKFRQAGAMRFLVGTVLRLASLRTYQGKLAFLPARENSDMASISSSPGS
HPHSIFCSSIQCLPQVLQKKRNPHKCTSKNPHPNSNDDDFLLAENEPKDDKLPDNLLSPI
EDPVPTDWTIEKEQEFVLVLATCHSHLAEELIVSPDARPDDGSLHLLYVTAGISRSALLR
LFLAMEKGTHLTCNCPHLMYRRVRALRLEPITKPGVITVDGEQVEYGPIQAQVHKGYGRL
ISG
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggacggagacggaggtgcggagctgcgcgcggagttcaccgacgcggcgacggggaga
ctgagattctccgtgaccttaacgcacagccgcctgtcggtgcggaggctcgggggtccc
gggtcgcccgtgtggcagcaaggtcaggagctcgcgctcggggactgcgtgggatgccgc
gcgtgccggagcgaggacgaggcggacgcggcggcgtatctgtcggtgtatctgtacccg
gtgcggcgcggctggaccggagctccctccggccgccaaagggtggagcaccgattcagg
gtcctcaccgcgggggacgcgcgcgctaacctgggggaggcggagcggtgggcgcgcgct
gtcaggcaccgtgcagcacagcacggccaggctctcagagacggtattgagtttaaccga
gtgtgtgtcagacggcgcatgatggtgctggtgaatcctcagagtggacgaggccaggcg
atgtctctctacactggccctgtattgagcatgctcactgaggcgaacatctctcacaca
ctcatcaccacagagcatcagaaccatgcacgtgagttggtaaggagcgccgatctgtca
gagtggagcgccatcgtcatcctgtcaggggacggacttctgttcgaggtgatcaatggt
ttgatggagagggaagactgggacgaagcgatccgcactccactcggcatcctgcctgga
ggatctgggaatgcacttgcagcatcggtgcaccattacacacaagctagccctgcactg
ggtgaggacttgctgctaagctgttgtttcctgctctgtaaaggtctggtgtgtcccctg
gacatcgtctctgtgcgtctctccactggtccccgtctcttctccttcctgtcactcgct
tggggctttgtggctgacgtggacattgaaagcgaaaagttccgccaagctggtgctatg
cgcttcctcgtgggcactgttctgcgcctggcatctttacgtacttaccagggcaagctg
gcattcctgcctgctagagagaactcagacatggcatcgatttcctcctcccctggttca
catcctcattccattttttgttcctctattcagtgtctaccacaagtactgcagaagaaa
agaaatcctcataaatgcacaagtaaaaatccacatcctaactctaatgatgatgatttc
ttactcgctgaaaatgagccaaaggatgacaaactacctgacaaccttttgagccctatt
gaagatccagtgccaacagattggaccatagaaaaagagcaagaatttgttttagttctg
gcaacctgccactctcacctggcagaggagctgattgtgtcaccggatgctcggcctgat
gacgggtcccttcacctgctctatgtaacagcaggaatatcacgatcagccttgcttcga
ctcttcctggccatggagaaagggacacacctgacatgtaattgcccacatcttatgtac
cggcgtgttcgagcacttaggcttgagccaatcacgaagcctggagtcattactgtggat
ggggagcaggtggagtatggaccaattcaagctcaagtgcacaagggatacggaagactt
ataagtggatga
DBGET
integrated database retrieval system
