Clarias gariepinus (North African catfish): 128520229
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Entry
128520229 CDS
T10780
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04510
Focal adhesion
cgar04512
ECM-receptor interaction
cgar04518
Integrin signaling
cgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128520229
04518 Integrin signaling
128520229
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128520229
09142 Cell motility
04820 Cytoskeleton in muscle cells
128520229
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgar04147
]
128520229
00536 Glycosaminoglycan binding proteins [BR:
cgar00536
]
128520229
Exosome [BR:
cgar04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128520229
Glycosaminoglycan binding proteins [BR:
cgar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128520229
Hyaluronan
Extracellular matrix or blood plasma proteins
128520229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
VWA_CoxE
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
128520229
NCBI-ProteinID:
XP_053350350
LinkDB
All DBs
Position
4:complement(28272000..28311101)
Genome browser
AA seq
2733 aa
AA seq
DB search
MGKIKGQFLLIILTSGFLLSSAQKTVCTQEALADIIFLVDSSFSIGTENFQKIRDFLFTF
VNSFDVSPDKVQIGLVQYSNSPHSEFHLNTFETKEKILDYIENLPYRGGGTRTGLGLSFL
LKHHFVKEAGSRAKDGVPQIAVVITDGQSQDDVEPHAQDLKQQGIILYAIGIKDADMEQL
KEIATKPHDQHIYSVTDFTALQGISQGFIQVICTTVEEAKRQVSQVPLGCKANLADIVFL
VDGSSSIGDADFLRVKKFLYDFIVALDVTPNKVKVGIVQFSNSPQDEVELGQYADKNDLL
EKVDNLSHIRGGTETGKALQFIGDNYFTNSSASRISQSVPQIAVVITDGGSVDEMKSPAT
ELRKKGVLIFTIGVGKDSITELESIANKPYQHFVLSFKDYEELVKATSTIVDKVCISMEA
QQQALAPKFKDVLVLVDSSVEQTQKVSLFLNRLANQLNVGSTFNQMALAQFSESVSVEFR
FNAYKTKNEAVELIRKFQLRGTGQRKLGKAMDYVRTHLLTPEAGSRIAEGNKQYLLIVSK
GESHDDVHKALHALKDEEVTVVNVDFSKELFVLQSPGLPGSPGPRGSAPALGVPNVKGVS
FVHDARNKNAVEITQDVKTIIETQETVQVTGDCKSAPAVADIVFIVDVSDSIAFSNYRLV
RDFLHRMINGLEISSDGVRVGMVLYSDTPTADFYLNTFDNKDDILQYIKLLPFKGGGSKT
SKALKFAKDKLFINETGSRRDVGVQQIAVVITEGDSLDNVTKQATELRRSGVQVYALGVT
KDNVEQLKEIASYPPARFVFSVENFARLNKMETILRKTLCNNVVRSTVDKSVRYTLKQGC
VQTEEADIYFLIDHSGSIYPSDFQDMKKFILEFLLMFSIGPKQVRVGVVKFADNTTLEFR
LNKYNDRASLERAVDSILQIGGGTKTGDALSFMMPLFKEAEKTRGTKVQEILIVITDGKS
QDKVKEPAAKLRAQGVTIYTIGVKDANQPELLEIAADPKRMYFVTNFDALKPLQNEIVTD
ICSDEACKNVLADVIFLIDGSGSIESEDFSKMKKFMNTIISKSLIGKDSVQFGVVQFSSD
SQTEFSLNDFSNKHQMQQAINDMEQRGGGTMTGNALHFVTDYFDPQQGGRPSTPQILIVI
TDGESQDAVAQPAQALRNKGIAIYSIGVRNANSTQLREISGTQDKVYLERDFDALDSLYK
DVLLKICTSDNDCQKSQVADVVFLVDDSSSITGDGFDSMKFFMNSVVNNTQVGQDNVRFC
TILYSDTPKSKFPLNRYYSKREVRDAIDNLNHEGGNTYTARALLYSLNYFSEANGGRRTK
GVPQMLFVITDGEATDPHDLPKAADELEKLGVSVYGIGVAGAKTDELEIITKDKRKISHV
NDFEALKTLQKNISGVICNNTKPECQKKAADLVILIDGSESIKEMSWKTIISFMLSLIDN
LRIRQDLFRVGVAQFSSQYKKEFNLNEYNNDVDVKKAIEAIKQMKEGTKIGYALKQVQEF
FHASRGSRIQDGISQNLLLITDGESHDDVKGPADQLRAMGIEIFVIGIGEISWSQINYIA
ASPDRVFYVDNFDCLKLNKTTQVVVDSICTPDPEEQRSCTVDIGIGFDISRGSSHSLFSG
QYSLQTFLPEIIRHISTVNNLCCLPGQPVLQTNIGFRLVASDGKILHDINFEPYSEASVK
KVMDYNKTQALAFNTQLLHSFQNKFAASKAGVKVLIIFTDGLDVSVQNLFVASENLKKSG
VHALIPVALEGVKSTTDLQKLEYGRGFGYNEPLMIGMQNVASSLQKQIDSVTSRECCNVT
CKCTGHEGIRGPQGPPGTKGSPGQKGHPGFPGEEGGVGERGPTGLNGTQGHPGCQGKRGI
KGGRGYRGDTGEDGEHGLDGVNGEQGVTGLAGYPGEPGDPGSPGKKGIQGILGVPGQKGL
RGDPGVSGIDNNARGPKGEIGNPGQPGEPGPDGSPGRPGDKGSPGQKGRRGIAGSVGNNG
SPGEFGVIGAPGPSGPQGQIGPSGAPGQKGILGFPGPQGPPGAQGIKGSKGSVGPRGHKG
QSGEPGNKGEAGPEGFRGPQGNDGPDGYGSPGHKGQKGDLGFPGYPGLQGESGDIGREGN
NGPKGRSGRGGNAGRPGAPGDHGTIGPPGQRGSKGPPGISEKSTCQLISYVQQNCACCKD
KAVCPVYPTELVIGLDVSEDMTSQLFERMRSTLFSLLDTIDIAESNCPTGTRVAVVSYSS
NTKYLIRFSDYRRKKDLLEAVKNIPLTRTSNRRNIGAAMRFVGRNVFKRIRQGVLIRKVA
IFFSGGQSQDVTSITTAVLEYKALDINLGVIGFGDTPNVQRAFQADETGSFINVRERSEA
QGAALERIQRCIICFDPCNPARDCPQTTTVSTPKEVDVDLAMLVDGSRSIQADQYQGVKE
VLRTVLDQLVVSGQPSKVDTQARVALYQQSSSYSEAQAPVKQIFTFQQFKDRNQMKQSIS
VNLQQTGGYSRLGHAVEFVVMQNLLTASKPRKNKMVLLIVGGETEYSDRAKLDFISMMAK
CQGVVLLTLTVGDHFNYTQVEELASFPQEQHIVHLGHVKKGEQEYSQRFIRTFLHILSRK
INTYPSPLLRQQCERFQQQQSQGQITRVIFEAAKRPSVERIPLTESTYTEYTETEEVEKE
LDKEFAEPTVTLRGAEYEYGHVLNSEPGDSNVTDVCHLKKDEGTCSNYVPKWFYDQEQNK
CSHFWYGGCGGNLNRFDSKKECETRCMALHTLQ
NT seq
8202 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaataaaaggacagttcctgctcattattttaacatcaggtttccttttgagc
agtgcacagaaaacagtatgcacacaggaagccttggctgatatcatcttccttgtggat
agttcttttagtattggcacagaaaacttccagaagatccgtgactttcttttcactttt
gtgaacagttttgatgtgagtcctgataaggttcaaatcggtctagtccagtacagcaat
tcaccgcattctgaattccaccttaacacctttgaaaccaaggagaagattcttgactac
attgaaaatctcccttatcgaggaggtggcacaaggactggattaggtttaagctttttg
ctgaagcatcactttgtgaaagaagcaggaagtcgtgctaaagatggggtgcctcaaatt
gctgtggttatcacagatggacagtcacaggatgatgtggagccacatgcacaagaccta
aaacagcaagggatcatactttatgctattggtattaaagatgctgatatggagcagctg
aaggaaattgctactaagccacatgaccagcacatctacagtgtgactgatttcacagct
ttgcaaggaatctctcagggtttcatccaggtcatttgcacaacagtggaggaagctaaa
cgtcaagtgtctcaggtgccactagggtgcaaggctaacttagctgacattgtgttcctt
gttgatggctctagtagtattggtgatgcagacttcctgagggtgaagaagtttctatac
gatttcatagtggctcttgatgtcacacctaacaaagtaaaagtaggaatcgtacagttt
agtaatagcccccaagatgaggttgaattggggcagtatgcagacaaaaatgatctgctg
gagaaggtcgacaaccttagccacataagaggaggcactgaaactggtaaagctctccaa
tttatcggagacaattacttcacaaattcaagtgctagtcgaatcagtcagagtgtgcca
cagatcgctgtggtgatcacagatggtggctctgttgatgagatgaagagtccagccacg
gagctacggaaaaagggggtgttaatcttcaccattggggttggtaaagatagcattaca
gagctagagtccattgctaacaaaccatatcagcactttgtattgagtttcaaagactat
gaggagctggtaaaagccacaagcaccatagttgacaaagtgtgtatttctatggaggcc
caacagcaagctctagctccaaagttcaaagatgtgcttgtgttggtggacagctcagtt
gaacagacccaaaaggtgtcactgttcctaaatcgcctagccaatcaacttaacgtgggg
agtacattcaatcaaatggctttggctcagtttagtgaaagtgtttcagtggaatttcgt
tttaatgcttacaaaactaaaaatgaagcagttgaacttattcgcaaatttcaactcaga
ggcactggacagcgtaaacttggaaaggcgatggattatgtgcgcacccaccttctcacc
cctgaagcaggcagtcgaattgccgagggaaataagcagtatctgctgatcgtgagcaaa
ggagaatcacatgatgatgtacacaaagcacttcatgcattaaaggatgaggaagtgact
gttgtcaatgttgacttcagcaaggaactatttgtcctacagtcacctggtctacctgga
agtcctggtccacgtggttctgctcctgcacttggagtacctaacgtgaagggagtttct
tttgtacatgatgcaagaaacaaaaatgctgtagaaataacacaagatgtaaagactatc
attgaaactcaggaaacagtccaagtaactggagactgcaagtcagctccagcggtggca
gatatagtgtttattgtggacgtgtcagacagcattgctttttcaaactatagactggtt
cgggactttcttcaccgtatgattaatggcttggagataagttctgatggagtgcgggtt
ggaatggtgttatacagtgacacacccactgctgacttttacctaaacacttttgataac
aaagacgacatcctgcagtacattaaacttttaccctttaagggtgggggatccaaaact
agcaaggcgctgaagtttgctaaagataaactcttcatcaatgaaacgggcagccgacgt
gatgtaggagtgcagcagattgctgtagtcataactgagggggactcgctggataatgtc
acaaaacaagcaacagagctacggcgaagtggagttcaggtttatgctttgggagtcacg
aaagataatgtagagcagctgaaagagattgcatcttatcctcctgcgaggtttgttttc
agtgtggaaaactttgctaggcttaataaaatggaaacaattctaaggaagactctgtgt
aacaacgttgtccgttcaacggttgacaagtctgttagatacactttaaagcaaggatgt
gtccagacagaagaagcagacatctatttcctaattgaccattctggaagtatttatcca
tcagactttcaggacatgaaaaagttcattcttgagtttttgcttatgtttagtattggg
ccaaaacaggtccgtgtgggggtggtgaaatttgccgataacaccacactagagtttcga
ctaaataaatataatgacagagcctctcttgaaagggctgtggacagcattctgcagata
ggtggaggcacaaagacaggagatgctctgtccttcatgatgccactttttaaggaggct
gaaaagactcgtgggactaaggttcaagagattcttattgtcattactgatggaaagtcc
caggataaagtgaaagagccagcagcaaagctgagagcacagggggtgaccatctacacc
attggagtgaaagacgcaaatcaaccagagctccttgagatagcagctgatccaaagagg
atgtacttcgtcaccaactttgatgcactgaaacccctccagaatgaaattgttactgat
atttgttcagatgaggcctgcaagaacgtgttggcagatgtcatttttttgattgatggt
tcagggagcattgaatctgaagacttttcaaagatgaagaaattcatgaatactataatt
tcgaagtctctaatcggcaaggatagtgttcagttcggagttgtgcaatttagctcagac
tcccaaactgaattttcccttaacgatttttctaacaaacatcaaatgcagcaggccatt
aatgatatggagcaacggggtggtgggactatgactggcaatgcactccattttgtgaca
gattactttgatccacaacaagggggtcgtcccagcactccacagattctcattgtaatc
acggatggtgaatctcaggatgctgttgctcagcctgcacaagccctcagaaacaaaggc
attgcaatatactccataggagtacgtaatgccaacagcacacaactgcgagagatcagc
ggaactcaggacaaagtttatctggaaagagattttgatgcattggactccttatataaa
gatgtcttgcttaagatctgcacttctgataatgattgccagaaatcacaggtagcagat
gttgtcttcttagtggatgactccagcagcattactggagatggctttgacagtatgaag
ttttttatgaactcagtggtaaacaacacacaggttggacaggataatgtccgtttttgt
actattctttactctgacacacctaagagcaaatttccccttaatcgttactacagtaaa
cgagaagtgcgggatgctatagacaatctaaaccatgagggtggaaacacctacacagcc
agggcactactttactcactgaactactttagtgaagccaatggtggaagaaggacaaaa
ggtgtcccacagatgctgtttgtcataacagatggtgaggccacagacccacatgattta
cccaaagctgctgatgagcttgaaaaacttggtgttagtgtttatggcattggcgtggcc
ggtgcaaaaacagatgagctggagatcataaccaaagacaaaagaaaaatttcccatgtt
aatgactttgaagctttaaagaccctgcaaaaaaacatttctggtgtgatctgcaacaac
acaaaaccagagtgtcagaaaaaggcagctgatttggtcattttgattgacgggtctgaa
agtattaaagagatgtcatggaagaccataataagttttatgcttagcctcattgacaat
ctacgcatcagacaagacctctttagagttggtgtagcccagttcagttcacaatacaaa
aaggaatttaacttgaatgaatataataatgacgtggatgtgaagaaggccattgaagcc
attaagcaaatgaaagaaggaacaaaaattggatatgctctaaaacaagtgcaggagttc
tttcatgccagtcgtgggagccgcattcaagatggaatttcacagaacctgttgttgatc
actgatggagaatcacatgatgatgttaagggcccagctgatcaactgagggccatgggg
attgaaatatttgtgattggaataggtgaaatctcatggtcacagattaactacattgct
gcgtcacctgacagagtattttatgtggacaattttgattgcctcaaattaaacaaaaca
acacaggtggtggtcgatagcatttgcactcctgatccagaagaacaaaggagttgcact
gtagatattggtattggatttgatatatcccgtggtagctcacattcactctttagtggc
cagtatagcctgcagaccttccttcctgagattatcagacatatttccactgtgaacaac
ttgtgctgtctacccgggcagcctgttctacaaaccaacattgggttccgcctggttgct
agcgatggcaagatactgcacgacattaactttgagccctacagtgaagcttcagtgaag
aaagtgatggactataataagactcaggctctggcttttaacacccagctgctacactct
tttcagaataagtttgcagcatccaaagctggtgttaaagtattgatcattttcaccgat
ggcctggatgtatcagttcaaaatctctttgttgcctcggaaaatctcaagaaaagtgga
gttcatgcactgattccagtcgctctggaaggagtcaaaagcaccacagacctacaaaag
ctggaatatggaagaggatttggctacaatgagcctcttatgattggcatgcaaaatgtg
gccagttctctgcagaagcagatcgattctgtgacctcacgagagtgctgcaatgtgaca
tgtaaatgtactggccatgaagggattcgaggaccacaaggacctccagggacaaagggc
tctcctggccagaaaggacatcctggatttcctggagaagaaggaggagttggagagagg
gggccaacaggtttaaatggaacccaaggacatccaggttgtcaggggaaaagaggtata
aagggtggcagaggctacaggggtgatacaggtgaagatggagaacatggtttggatgga
gtaaatggagaacagggtgtgactggattagcaggataccccggagagccaggagatcca
ggcagcccaggcaagaaaggtatccaaggaattctaggtgttccaggacaaaaaggattg
agaggtgatccgggtgtgtcaggaattgacaacaatgcacgtggtccaaagggtgagatt
ggaaacccaggccaaccgggagagccagggccagatggaagcccaggcagacctggagat
aaaggcagtcctggtcaaaagggaagaagaggcattgctggttcagtaggtaataatgga
tctccaggagaatttggagtaattggagcccctggaccttcagggccacaggggcaaatc
ggcccttctggtgctccaggacaaaagggaatacttggttttccaggacctcagggacca
cctggtgcacaaggaatcaaaggatccaagggaagtgtaggacccaggggacacaagggt
cagtcaggggaacctggaaataaaggagaagctgggccagaaggattcaggggccctcaa
ggaaatgatggtccagatggatatggatcaccaggacataaaggacagaagggggatctt
ggttttccaggatatcctggacttcagggggaaagtggagatattggccgagaaggaaat
aatggtcctaaaggcagaagtggaagaggaggaaatgcaggcaggccaggagctccaggt
gatcatggaaccatagggccacctggacaaaggggctctaaaggaccaccaggaatctca
gaaaagtctacttgtcaactgattagctacgtacaacaaaactgtgcctgctgtaaagat
aaagcagtttgccctgtgtaccccactgaattggtgattggtttggacgtgtctgaagac
atgacatctcagttatttgagagaatgcgctcaactcttttttctctgctggacaccatt
gatatcgctgaaagcaactgtcccacagggacacgagtggctgtagtgtcctacagttct
aacactaagtacctcatccgtttttctgactatcgtcgtaagaaggacttgttggaagct
gtaaagaacatccctctgacacgtacatccaacagacgcaacattggtgcagccatgcgc
tttgtggggagaaatgtcttcaaacgtattcgtcagggtgtcctgatcagaaaggtggca
atctttttctctggtggacagtcccaggatgtgacctccattaccacagctgttctagaa
tacaaggctctggatataaaccttggtgttattggttttggagatactcctaatgttcaa
cgtgcttttcaggctgatgagacaggaagcttcattaatgtccgggagagatcagaggct
cagggtgcagcacttgagaggatccagcgatgtatcatctgctttgatccttgcaatcca
gctagagattgtccgcaaaccaccacagtgtccactccaaaggaggtagacgtggatctg
gcaatgttggtggatggttcccggagcatccaggctgatcagtatcagggagtgaaggag
gtgttacgcactgtgttggaccagcttgtagtgagtggtcagcccagtaaagttgacaca
caggcacgagtggcactttatcagcagagttcatcatacagtgaagcccaggctccagtc
aagcagatcttcactttccagcagttcaaagaccgcaaccagatgaagcagagcatctct
gtaaatctacagcagactggtggctactccaggctgggtcacgctgtggaatttgtagtc
atgcagaatctcctcactgcttccaagccacgaaaaaacaagatggtgctgctgatagtt
ggaggggagacagaatattctgatcgagcaaaactggactttatctctatgatggctaag
tgtcagggtgtggtgcttctcactctaacagtcggggatcattttaactacacccaggta
gaggagcttgccagctttcctcaagagcagcacatagttcacttgggccatgtaaaaaaa
ggagagcaggagtactcacagcgctttataaggactttcctacacattttgagccgaaaa
ataaatacctacccttctccgctgctcagacaacagtgtgagagatttcagcagcagcaa
agtcaaggtcaaattacccgtgttatctttgaggctgctaagagaccttctgttgaaaga
attcctctaacagaatctacttacacggagtatacagagacagaagaagtggaaaaggaa
ttagacaaagagtttgctgaaccgacagtgacactaaggggggccgagtatgaatatggg
catgtgctgaactcagaaccgggagattcaaatgttacagatgtgtgccacctgaaaaag
gatgaagggacctgcagcaattatgtgcccaaatggttctatgatcaagagcaaaataaa
tgctctcatttttggtatggaggatgtggtgggaaccttaatagatttgacagtaagaag
gaatgtgaaacccgctgcatggcacttcatacactacagtga
DBGET
integrated database retrieval system
