Clarias gariepinus (North African catfish): 128523777
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Entry
128523777 CDS
T10780
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
cgar Clarias gariepinus (North African catfish)
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cgar04040
]
128523777 (scn1laa)
Ion channels [BR:
cgar04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
128523777 (scn1laa)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
128523777
NCBI-ProteinID:
XP_053351877
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All DBs
Position
5:25677152..25711033
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AA seq
1957 aa
AA seq
DB search
MAQILATPGPNSFRPFTRESLKAIEKQIAEEKSKKPKKGEQEGNTNDEDQPQPDIDLAAG
KKLPFIYGDIPNGMSSTALEDLDPFYCNQKTFIVLNRQKTIFRFNATSAFYLLSPFNPIR
KIAYKILIHSLFNIIIMCTILANCVFMTFTEPPNGRYLFKNIEYTFTAIYTFDSLIKILA
MGFCIGKFTFLRDPFNWLDFTVIVMAYVTEFSSSLGNVSALRSFRVVRALKTISVIPGLK
TIVGALFQSVKKLSDVMILTVFCLSVFALIALQLFMGNLRNKCIKIPTNGSINEDGFNLT
EYYNNAENYYTIEGKKDPLLCTVGSDLGCPDGYFCHKAGANPNYGFTSYDSFGWAFLSLF
RLMTQDYWENLYQQTLRASGKIYMIFFVLVIFLGSFYLVNLILAVVAMAYDEQNQATMEE
VQQKEETFQAMMEQLRRQQAEAQAAVAVFETGNLSGDSSSLASRLSSKSAKERCNQRKKR
KQKEEEWEKGDNEKVHNSDSESNVRRTSFRYSVDGNILSHDRTYPSPHQSLVSIQGSVFS
PRRNSRTSIFTFRGRLGSENGFADDEHSAFDDTGSRRGSLFFPHCSERLYSTGSRNSLTP
RVFLSPNGKVRCSVDCNGTVSYVTGNSLPNSPDVLQLPEVSIDKATTDDSRKKEEYRKRY
EAEQLSPGCLNEHTARQRALSVASIITNTMEELEDSRRKCHPCWYKFTKTFLIWDCFPAW
VKIKRLVHMFVMDPFVDLFITICIVINTIFMAMEHHNKGDVFVIVLRVGNYVFTAIFTAE
MIFKIIAMDPYKYFQESWNIFDSVIVTLSIVELGLENVPGMSVLRSFRLLRVFKLAKSWP
TLNMLIKIIHNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYNIKKCNISSDCSLPRWHM
SDFFHSFLVVFRILCGEWIETMWDCMMVAGQPMCLTVFLMVMVIGNLVVLNLFLALLLSS
FSADNLAATNDDEMNNLQIAMGRIRKGVAFVKERLHSFFHSSCFRRREKKVKEEDEQKNG
KNLGDMSPHTEVELIKNPGCEKEASHADSGSDNFIFDPTLTVCVPIATADSDPECHDMDG
LSSCSSDMEGDKEKLSDSMSFSEGSTVDLQPLKERRESFDFELELPEDDPDPCFTQGCVN
RFPCCQVNVEKGKWKTWWNIRHTSYRIVEHNWFESFIIFMILLSSAALAFEDIYIEKRKT
IKTVLEYADKVFTYIFILEMLLKWLAYGFAKYFTNAWCWLDFLIVGVSLISLVASALNYS
ELTAIKSLRTLRALRPLRALSRFEGMRVVVNALFGAIPSIVNVLLVCLIFWLIFSIMGVN
LFAGKFYECVNNTTGVRLNGSMVVNKSECVGKDVRWKNLKINFDNVGAGYLALLQVATFK
GWMDIMYAAVDNRGVDQQPEYEASLYYYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKK
FGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPSNRLQAYLFDVVTNQGFDIFIMVLIC
LNMVAMMVESEGQSQEARNHLKKINMVFVVIFTTECLLKMIALRQYFFTNGWNVFDFVVV
ILSIVGTFVSEVIKYFFSPTLIRVVRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNI
GLLLFLVMFIYAIVAMSQFAYVKKEAGIDDMFNFETFGNSMLCLFQITTSAGWDGLLSPI
LNRPPDCDPNKDHPGSQVKGDCGNPAIGIIFFVSYIIICFLIVVNMYIAVILENFSVATE
ESAEPLSEDDFEMFYEVWEKFDPDATQFIEYNQLSDFADTLDPPLRIPKPNTIQLINMDL
PVVSGERIHCLDILFAFTKRVLGEGGNMDVLRGQMEDRFMASNPSKESYEPIITTLRHKH
EDVSAAIIQRAYRMHVRRHSGKTASNTRTTVQENGMVSNKVPVVTDRCNNHCDSDKSNTS
SSTIVPPSYASVTQSIKEKYEKDKREKEIRGKDNSIW
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atggcacagattcttgccacgccgggaccaaacagcttccgcccatttacccgggagtcg
ctcaaggccattgaaaaacaaattgcagaggagaagagtaaaaagcctaaaaaaggagag
caggagggaaatactaatgatgaggatcagccacaacctgacattgacttggcagcgggc
aagaaattgccatttatatatggggacattcccaatggaatgtcatccacagcactggaa
gacctggacccattttattgcaatcagaaaacctttatagtattgaacaggcagaagaca
atcttccgatttaacgccacttctgccttctacttgctcagtccattcaacccaatcaga
aaaatagcatataaaattttgatacattcattgttcaacataataatcatgtgcactatc
cttgcaaactgtgtgtttatgactttcaccgaaccccccaacggccgatacttgttcaag
aatatagagtacacgtttactgcgatatatacctttgattcattaataaagatcttagcc
atgggcttctgtataggcaagtttacctttctcagagacccattcaactggctggacttc
actgtgattgtaatggcgtatgtgacagagtttagcagcagtttgggtaatgtctctgct
ttgaggtctttcagagttgttcgggccctgaaaacgatatcagttatcccaggcctgaag
accattgtaggagctctgttccagtcagtaaagaaactttcagatgtgatgattctgacc
gtcttttgtttgagtgtatttgcactgattgccctgcagctttttatgggaaacctgagg
aataaatgtataaagattccaaccaacggcagtataaatgaagatgggtttaacctcaca
gagtactataataatgcggaaaattattatacaattgaagggaagaaagatcccctgctc
tgtacagttggcagtgatttaggatgtccagatggttatttctgtcacaaagccggcgcc
aatccaaattatggctttaccagctatgatagctttggttgggctttcctctcacttttc
cgactaatgactcaagactactgggaaaatctctaccaacagactcttcgagcttcaggg
aagatctatatgatcttttttgtgctggtaatattcctggggtcgttctacctggtgaat
ttgatcctggctgtggtggccatggcttatgatgaacagaaccaagccaccatggaagag
gttcagcaaaaagaggaaacctttcaggctatgatggagcagctcaggaggcagcaagca
gaagcccaggcagcagttgcagtatttgagactggaaaccttagtggggacagctcctct
ttggcctccagactcagttccaaaagtgccaaagaacggtgtaaccagagaaagaagagg
aaacaaaaagaggaggagtgggagaaaggggacaatgaaaaggtccacaattctgactca
gagagcaacgttagaaggaccagcttccgatattctgtggatggaaacatactatcacat
gataggacatatccgtctcctcatcagtcacttgtgagcattcaaggctcagtcttctct
ccgcgccgcaacagtaggactagcatctttacctttcgtggccgtctgggatccgagaat
ggatttgcagatgatgagcacagcgcgtttgacgacacaggcagccgccgtggctcattg
ttttttccccattgctctgagcgtctttatagtactggcagcaggaacagcctgacccca
cgtgtttttctgtcccctaatggaaaagtgcgttgctctgtggattgcaatggcacagtg
tcatatgtgacagggaactccttgcccaactctccagacgttctgcagttacccgaggtg
tccatagataaagccactacagatgacagcaggaaaaaagaggagtacaggaagagatat
gaagctgaacaactgtcaccggggtgtttgaatgagcacacagccagacagagggctctg
agtgtagctagtattatcaccaatacaatggaagagctggaggattcgaggcggaagtgc
catccatgttggtataagtttacgaaaacatttctaatctgggattgctttccggcctgg
gtgaaaataaagagattagttcacatgtttgttatggatccattcgtggatttgtttatc
accatctgcattgtgatcaatactatattcatggccatggagcatcacaacaagggcgac
gtttttgtgatcgtccttagagtgggcaactatgtttttacagcgatcttcacagctgag
atgattttcaagattatagccatggatccttataaatacttccaagaaagctggaatata
tttgatagtgtcattgtaaccctaagtattgtagagcttgggttggaaaatgtacctgga
atgtcagttctgaggtcatttcgtttgcttagagtctttaagctagccaagtcttggccc
actttaaatatgctgatcaaaatcattcacaactcagtgggtgctcttggcaacctgacg
ctcgtcttggccatcattgtcttcatctttgccgtagtaggcatgcagttgttcgggaag
agttacaacatcaaaaagtgtaatatttcctcagactgcagtctccctcgctggcacatg
agcgatttctttcactcctttctggtagtgtttcgcattctgtgtggtgaatggattgag
accatgtgggactgcatgatggtggctggacagcccatgtgcctaaccgtctttctcatg
gtcatggtgattggaaaccttgtggttttgaaccttttcctggccttgctcctaagctct
tttagtgcagataaccttgcagccacaaacgatgatgaaatgaacaacttgcagattgct
atgggtcgcatccgcaagggcgtggcattcgttaaagaacgcctacacagcttctttcac
agcagttgctttagaagaagagaaaaaaaggtaaaggaggaagatgagcaaaaaaatggc
aagaatctgggagatatgtctcctcatacagaagtggagctgattaaaaacccaggatgt
gagaaagaggcatcacatgcagacagtggctctgacaatttcatcttcgatcccactttg
actgtttgtgtgccaatagccactgcagactctgaccctgagtgccacgacatggatggt
ttaagcagttgctcttctgacatggagggagataaagagaagctgtcagacagtatgagc
ttttcagagggcagcacagtggacctccagccactgaaggagagaagagaatcgtttgat
ttcgagcttgaattacctgaggacgatccagatccttgttttacacaaggctgtgtgaac
aggtttccttgttgtcaagtgaatgtggagaaaggcaaatggaagacatggtggaacatc
aggcacaccagttacaggatagtggagcataactggttcgagtcattcatcatctttatg
atcctgctgagcagtgcagcactggcctttgaagacatctatattgagaaaaggaagact
ataaaaaccgttttggaatatgctgataaagtctttacctacatctttatattggagatg
cttttgaaatggctggcatatggatttgctaaatacttcaccaatgcctggtgctggctt
gacttcttgatagtgggcgtctctctgatcagcctagtggccagcgcccttaattattca
gaactcactgccatcaaatctcttcgtacactgcgagctttgagacctcttcgtgctcta
tcacgttttgaaggcatgagggtggtggtcaatgctctttttggcgccattccctccatc
gtgaacgtgctgcttgtttgtctcatcttctggctcatctttagcatcatgggtgtcaac
ttgtttgctggaaagttttatgagtgtgtgaataacaccactggcgttcgcctaaatggt
agcatggtcgtgaacaaaagtgaatgtgtgggtaaagatgtcaggtggaaaaatttaaag
atcaactttgataatgttggagcaggatatctggctttgctgcaagtggcaactttcaaa
ggatggatggatattatgtatgctgcagtagacaaccgtggtgtagatcaacagcctgag
tatgaggcaagtctgtactactacatctactttgtaatcttcatcatatttgggtccttc
ttcacactgaaccttttcattggcgtcattatcgacaacttcaatcagcagaagaaaaag
tttggaggtcaagacatttttatgacagaggaacagaagaaatattacaacgctatgaag
aaacttggttcgaagaagccacaaaaaccaattccccggccatcaaacaggctccaggct
tatctctttgatgttgtaacaaatcaaggtttcgacatcttcatcatggtactcatttgc
cttaatatggtcgctatgatggtggaatcggaaggtcagtcacaagaagcacgcaatcac
ctgaagaagatcaacatggtgtttgtggtcatcttcacaacggaatgtctactaaagatg
attgcacttcgacagtacttcttcacgaatggctggaacgtctttgactttgtagtcgtt
attctctcaatagttggcacttttgtctctgaagtcattaaatacttcttctctccaacc
ttgatccgtgttgttcgacttgctcggatcggccgaattctgcggctcatcaaaagtgcc
aagggaatacgtactcttttgtttgccttaatgatgtctctcccagctctattcaacatc
ggtcttcttctcttcttggtcatgttcatctacgctattgttgccatgtcacaattcgcc
tatgtcaagaaggaggctggaattgatgacatgtttaactttgagacttttggaaacagc
atgttgtgtttgtttcaaatcactacctctgcagggtgggatggactcctttcacctatt
cttaacaggcctcccgattgtgacccaaacaaggatcaccccggcagccaagtcaaaggt
gactgtggtaacccagctattggtatcatcttctttgtgagctacattataatatgcttc
ttgattgtggtgaacatgtatatagctgtgatccttgagaattttagtgtggctacagag
gagagtgcggagccattaagtgaggatgactttgaaatgttttatgaggtgtgggagaaa
ttcgaccctgacgctacacagttcatagaatacaaccagttgtctgactttgctgatacc
ctcgatccacctttgcgtatacctaagcccaacacgatccagctaattaatatggaccta
ccagtcgtaagtggggagcgaatccactgcctggacattttgtttgcatttacaaagcgt
gttttgggggaaggtgggaatatggatgtcctccgtgggcaaatggaggaccgtttcatg
gcctctaacccttccaaggaatcttatgaacccatcattacaactctgcgtcacaagcat
gaggacgtgtcagccgccatcattcagcgggcctacaggatgcatgtcaggagacatagt
ggaaaaactgcctctaacacaaggacaactgtacaggagaatggaatggtttcaaacaaa
gtcccagtggtgacagacaggtgtaacaaccactgtgattcagacaaatctaatacatca
tcttctaccattgtcccaccctcatatgccagtgtaacacaatctattaaagaaaaatat
gagaaagacaagagggaaaaggaaataagaggaaaagataacagcatctggtaa
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