Clarias gariepinus (North African catfish): 128531535
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Entry
128531535 CDS
T10780
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128531535 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgar03021
]
128531535 (polr1a)
Enzymes [BR:
cgar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128531535 (polr1a)
Transcription machinery [BR:
cgar03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
128531535 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF787
Motif
Other DBs
NCBI-GeneID:
128531535
NCBI-ProteinID:
XP_053361431
LinkDB
All DBs
Position
10:complement(10690951..10713283)
Genome browser
AA seq
1696 aa
AA seq
DB search
MLFSKETPWRRLEGMLFGMYSSEEIRKLSVKGVTNPLLLDNVGNPAPNGLYDLSLGPADI
KEICTTCMQDFNNCPGHFGHVDLHLPVYNPFLFDKLYMLVRGSCLSCHMLTCPRAAIHLL
LNQLKLLDVGAMREVCEISVVLNQFLEGSPKASGAEIQEALEEFSVPILKANQSSYGGAP
IKHICELKASLITEFWRTHMASRKCPSCNASKSQIRREHNSKLIITRSGVKDDDGADKDD
AHMAKRGYLTPSLARDHVVKVWEKEGFFLKHLFSGLAENSPNGFSPDMFFLELLMVPPSR
YRPVSRLGDQMFTNGQTVNMQAVLKDNVVIQKLLALIATEKASTIEGSLTQLEEAPETQE
PSQMDQAFLAGLPGVTLTDKLYNVWIRLQSHVNIVFDSDMDKLMTEKFPGIRQLLEKKEG
LFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLN
GPDVHPGASMVINEDGSRTILSRVNPTQREAIAKQLLTPSTGQHRMPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTGMTIRDCFFPKDQYMELVYRGLTDKRGR
VKLLPPALIKPQKLWTGKQVVSTLLLNVIPENHIPLNLTGKAKIPSKAWVKDPPRAVPGY
HPDSMCDSQVVIRNGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTMGVEDILVKPGANKRRKKIIKESVNCGIKALGAAFNLPAAAAESEGRDLWQ
NAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPVGLHRSFPENNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRAGGFVTGRFLTGIKPPEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP
KTQFLQPRQFPFIKDNFEVIRKSQCLDEVLAKLDPEAAYKHFKAIKKWKAKHVHSSPRDG
AFLHFSQKKLSKLKAQAEGLSGELTNGRDNATLQLVETWTTMDESSRVKYLKKSAHCPDP
CLGVHRPDICFGSVSETFESITDSYLSQFNIKQEFHTSSEYVDNERLRHLLHLKWQRALC
EPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSKIKTPMMS
IPVLSNKKALKRVKTLQKKLTRVCLAEVLHKVDVVETLRIEGKRGQKKRIFTVSFHFLPS
ERYQQDKMLMPQQILRFMEDRFFLLLLDAIKKLSAKLASINSVDTRKATTKDTDRDAEGA
INREDGGDEEAEEGRVVDDEADEGDADAADAKRKEKQEEEVDYESDEGENSGDEEQEEMT
EQPEEEVGTEEPSEGTHHNSQPSSQEKVEEETPESMRINKVLQLSSSIEAYKYDQHKGLW
CEVTLALPVSKVHFDLTSLVVAQAQNAVIMETKGITRCLLNEVTTKNGAKQLVMNTEGIN
MQEMFKHGDVLDLNRLYSNEIHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLV
ADYMCFEGVYKPLNRFGMQSNSSPLQQMTFETSYKFLKQATMLGLYDKLNSPSACLVVGK
LVKGGTGLFDLKQPLQ
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgcttttttctaaggaaacaccatggaggcggttggaaggcatgttgttcggcatgtac
tcctcggaggaaatacggaaactgagtgtgaaaggtgtcactaatccactgctcctggac
aacgtgggtaaccccgctcctaatggactctatgatctgtcactgggtccagctgacatt
aaagaaatctgtacaacctgcatgcaggacttcaacaactgcccaggacacttcggtcat
gttgacttgcacctacctgtctacaaccctttcttatttgataaattgtacatgcttgta
cgagggtcctgtctgtcatgccacatgctgacgtgtcctagggctgctattcacctgctt
cttaaccaactcaaattattagatgttggagcgatgagagaagtctgtgaaatctcggtc
gtcctcaatcagtttttagaaggaagtccaaaagcatcaggagcagaaatccaagaagct
ttggaggaatttagtgttcctattttaaaagccaatcaaagcagctatgggggtgcacct
atcaagcatatttgtgagttgaaagccagtctcatcacagaattttggagaacgcacatg
gcatctcgaaaatgccccagctgcaatgcaagcaaatcacagatacgtcgagagcacaac
agcaagctaatcatcacccgttccggcgtcaaagatgatgacggagcagacaaagatgat
gctcacatggctaaacgtggatatctaacaccgagcttggcccgagatcatgtcgtcaaa
gtgtgggaaaaagagggtttcttcctgaagcacctgttttcaggcctggcagagaacagt
cctaacggtttcagccccgatatgttcttcttagaattgctaatggttcctccatccagg
taccggccagtcagtcgtctgggagatcagatgtttaccaacggacagacggtgaacatg
caggcagtcttaaaggacaacgtggtcattcagaaactgcttgccctcattgcaactgag
aaagccagcacgatcgaaggttctctgacacagctggaggaggccccagagacacaagaa
cccagccagatggaccaggcgtttttagcagggctacctggagtcacccttacagacaaa
ctctataacgtctggatccgcctgcagagtcatgtcaatattgtgtttgacagcgatatg
gacaagctgatgaccgaaaagttccccggaatccgccagcttttggagaagaaggagggt
ctgtttagaaagcatatgatgggaaagcgagtggattatgctgctcgctcggtcatctgt
ccagacatgtacatcggaaccaatgaaatcggaatacccatggtgtttgccactaagctg
acgtatccacagccggtgacgccgtggaacgtgaaggagctgcgtcaggctgtgctcaat
gggccggatgtgcacccaggagcctctatggtcatcaacgaggatggttcgcgaaccatt
ctcagccgcgtcaaccccactcagagagaggcaattgctaagcaacttctcacgcccagc
acaggccagcaccgcatgccaatgaagattgttaatcgccacattaaaaatggagatgtg
ctcctgttgaatcgccagccgactctacatagaccgtctatccaggctcactgcgcacga
atcctgcctggagagaaggttctacggctgcattacgccaactgcaaagcctacaacgct
gactttgatggtgatgagatgaacgcacacttcccgcagagtgagctgggtcgggctgag
gcctacacacttgtcagcacagaccagcagtacctcgtacccaaggatggaaaacctctg
gctggactcatccaggaccacatggtgtcgggcaccggcatgaccatccgtgactgcttt
ttcccaaaggatcagtacatggaactggtctatagaggtcttactgataaacgaggcaga
gtcaagctgcttcctcctgctctcatcaaacctcagaaactttggactggaaaacaggtc
gtgtccacccttttgttgaacgtcatcccagaaaaccacatccctctgaacctgacagga
aaggccaagattcccagtaaggcctgggtgaaggatcctcctcgagccgtgccaggctac
catcccgactccatgtgtgactctcaggtggtgattcgaaatggtgagctgctagtggga
gtgctggataaagcgcactatggtagctctgcatacggactggtgcactgctgctatgaa
ctctatggaggagagaccagtggcaagcttctaagctgcttggcccgtcttttcactgcc
tacctgcagctctatcgtggctttaccatgggtgtggaagacattttggtgaaaccagga
gctaacaagcgaagaaagaagatcattaaagaatcagttaattgtggcatcaaggcactc
ggggcagccttcaacctgcctgctgctgctgcagaaagtgagggtcgtgacctttggcaa
aatgcccatttgaacatagaccagcgagacttcaatatggttgacctgaaatttaaagaa
gaggtcaatcaagtcaacaacaacatcaacaaggtgtgcatgccagtgggtctgcatcgt
tcatttcctgagaacaacctccagctgatggtgcagtctggagccaaaggatccactgtc
aatacaatgcagatctcatgtctgctgggtcagattgagcttgagggtcgtcgtcctccc
ctgatgccttctgggaaatcccttccgtgcttccagccttatgagccacagcctcgtgca
ggtggcttcgtgaccgggaggtttctgactgggataaaacctccagagttttttttccac
tgtatggcgggtcgtgaaggcctggtggacacggctgttaaaactagtcgttccggatat
cttcaaagatgcgtgataaagcaccttgaaggactggtggttcagtatgacctgacagtg
agggacagtgatggcagcgtggtgcagttcctctatggagaggatgggctggatatccca
aaaacacaatttctgcagcctcgtcagttcccgttcatcaaagacaactttgaggttatc
agaaaatcacagtgtttagatgaagtgctggctaaactggacccagaggcggcttataaa
cactttaaggccattaagaagtggaaggctaagcatgtgcattcgtctcccagagatggt
gcgttcctgcacttctcgcaaaagaaactgagcaagttgaaggctcaagccgagggcctg
tcaggagagttaaccaatgggagagacaatgctactctgcagttggtggagacttggaca
actatggatgaatccagccgtgtgaaatatctaaagaagtcagcccactgtccagatcca
tgtctaggtgtccaccggcctgacatctgtttcggttctgtgtctgagacatttgaatcc
atcacggattcctacctcagtcagttcaatatcaagcaggaatttcacacgtcttctgaa
tatgttgacaatgagaggttaaggcacctgttgcatctgaagtggcagagagcgctgtgt
gagccgggagaggctgttggactgctggctgctcagagtattggtgaaccctccactcag
atgaccctcaacacctttcactttgcaggcagaggagagatgaacgtgactttgggtatt
cccaggttacgagaaattcttatgattgctagctccaaaatcaagacccctatgatgagc
attcctgttttaagcaacaagaaagctttgaaacgagtgaagaccctgcagaagaagctc
acacgtgtgtgtctggcagaggtgttgcataaagtggatgtggtggagacgcttcgaatt
gagggtaaaagaggccagaagaagagaatcttcacagtctcattccacttccttccttcg
gaacgatatcagcaggataagatgttaatgccccagcagatcctccgcttcatggaagac
agattcttcttgttactgcttgacgccatcaagaaactaagtgccaagctggcctcaata
aattccgtggacacgcgcaaggccacaacaaaggacacagatcgggatgcagagggcgcc
attaacagagaagatggtggagatgaagaagcggaggagggcagagtagtggacgatgaa
gcagatgaaggggatgcagacgctgctgatgccaagaggaaggagaaacaggaggaggag
gtggactatgaaagtgatgagggggagaacagtggggatgaagagcaagaagagatgacc
gagcaaccagaggaagaagtgggaacagaggaaccatctgaggggacgcaccacaatagt
caaccctccagccaagagaaggtggaggaagaaacgccggaatcaatgagaattaacaaa
gtgctgcagctcagctccagcattgaggcctacaaatatgaccagcataaggggctgtgg
tgtgaggttacccttgcactcccagttagcaaagtgcactttgacctgacctctctggtg
gtggcacaagctcagaacgctgtaataatggaaacgaaaggtattactcgctgtttactt
aacgaggtgaccacaaagaatggtgccaagcaactggtaatgaacacagagggcattaac
atgcaggagatgttcaaacatggagatgttctcgacctgaatcgtttatattcaaatgag
atccatgccatggccaacacgtacggtattgaagtggctctgagggtcattgagaaggag
attaaagatgtgtttgctgtttatggtattgaagtggacccacgacatctctctctagtg
gccgactacatgtgctttgagggcgtgtacaagcctctgaaccgcttcggcatgcagtca
aacagctcaccgctgcaacagatgacctttgagaccagctataagtttttgaaacaagcc
acaatgttgggcttgtatgataagttaaattcaccttcagcttgcttggttgtgggaaaa
cttgtgaaaggaggaactggactctttgacctgaagcagcctttacagtga
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integrated database retrieval system
