Clarias gariepinus (North African catfish): 128531763
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Entry
128531763 CDS
T10780
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
128531763 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgar03000
]
128531763 (kdm2ab)
04121 Ubiquitin system [BR:
cgar04121
]
128531763 (kdm2ab)
03036 Chromosome and associated proteins [BR:
cgar03036
]
128531763 (kdm2ab)
Enzymes [BR:
cgar01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
128531763 (kdm2ab)
Transcription factors [BR:
cgar03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
128531763 (kdm2ab)
Ubiquitin system [BR:
cgar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
128531763 (kdm2ab)
Chromosome and associated proteins [BR:
cgar03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
128531763 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
128531763 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
Cupin_8
F-box
DUF7885
PHD
LRR_8
Motif
Other DBs
NCBI-GeneID:
128531763
NCBI-ProteinID:
XP_053361870
LinkDB
All DBs
Position
10:7225998..7241211
Genome browser
AA seq
1268 aa
AA seq
DB search
MEETRYSKRLRTGTRRRYQDDGISDDEIEGKTTFDLEEKLESDYFNSDLVKIMDGKDFTF
EYIQREGLRDPIIFTKADGLGIQMPDPDFSVSDVKLFVGSRRMIDVMDVSTQKGMEMSMG
QWRRYYETPASEREKLYNVISLEFSHTKLEHLVKRPASVDLIDWVDIMWPRHLKERQRDS
TNVITDMHYPKVQKYCLMSVKGCFTDFHIDFGGTSVWYHILRGRKVFWLIPPTPHNLELY
ENWVLSGKQGDIFLGDKATTCQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHSFN
IPMQLNIYNIEDRTRVPSKFRYPFYYEMCWYVLERYLYCLTNISHLTPEFQRHSLGIGLK
KDDFVKPDSEGKEEQGEVKQEPDEQEDEAASPPARPGVKVHLTPLELEGMWQLLHKLEQL
PAHKKCVPVGIRNAPALLNDIRALLEEHANDDPQLSYTGIPIVTWPKRPSWYTPRPPSPS
VMYRPRPSVSGPTMAPVPRPAKPASSISALRRRRVRCKRCEACRRSECGDCTYCRDMKKF
GGPGRLKKSCILRQCLTPALPLTAVCAMCKEGGQEDSEGTATTQTLMECSECGQITHPEC
IQVPGEGVINKDLPSCWECPKCVRDKNTESSSSNSEEDSKSTITSSAPSAPPAKRAYREG
IGVGGLRLGRRGQPLPSPPSLPLTRSRRQPPPSQRILLQHQQSRKRAGALELQHRKRIKL
ERSKLFQSTRTSVSVSPKLLRQRSLERASMIRAGLSRGLSRRRSVASYQEREVRLRSQAR
SGALRGRAEREEGGADNDKEEETEKTERRENGLGGKENRPQRYGARQTEDENGDGQQNGE
RNAEREEDGGDQTRTDSSGALADDTRDQGSCVTVTLQPSRGRRDPSTIVPKLEANVSSVS
HTQSNSDFQGKSLLRPPLRGDSRRTDKAHAHTHPHTPRSQLQSATLTRSASKHVHVSQSL
KCSSRESHHNSTRERNGKNVRPERGKPPASCTSPEQSGPSEPGWGRLVWVSVFRYLTRTE
LCVCMAVCKSWYKWGCDKRLWTHISLSRCQSISPQALSGIIKRQPVTLDLSRAKISKKQL
TWLINRLPGLKDLVLSGCNWTSVSALSSPSCPLLRSLDLRWADGVKDAQIRELLSPPGSN
NRSQLRNMQCLRLCGLEVTEATLRLIIRHMPQLTRLELSHCPLTDNALNLLTAVGSSTRN
TLTHLNLAGCSRLTDHCLVYLQRLSCVSVLDLRSCKGISRQACEKFISELSVNALYCLSD
DKLIQRIS
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggaggagacccgctacagcaagcgcctgcgaacaggaacacgccggcgctatcaggac
gatggcatctcggatgatgaaatcgaggggaagacgacttttgacctggaagaaaagctt
gaaagcgactacttcaattcagacctggtcaaaattatggatggaaaagacttcactttt
gagtacatccagcgggaagggcttcgagaccccatcatctttactaaagcagacggactt
ggcattcagatgcccgatccagacttcagcgtgagtgatgtgaaactgtttgtaggcagt
cgaaggatgatcgacgtgatggacgtaagcactcaaaagggcatggagatgtcaatgggg
cagtggaggcgctattatgaaaccccggcctcggaaagggaaaagctgtacaacgtcatc
agtctcgagttcagtcacaccaaactggagcatctcgtcaagagacctgcctcggtggat
ctgatcgactgggtcgatatcatgtggcctcggcacctgaaggagagacagagagactcg
accaacgtcatcactgacatgcattaccccaaagtacagaagtactgtctgatgagtgtg
aagggctgctttacagacttccatattgactttggtggcacgtcagtatggtatcacatc
ctgaggggacgcaaggtgttctggctgatcccgccgactccacacaacctggagctctat
gagaactgggtgttgtcaggaaaacagggtgacatcttcctcggggacaaggccaccaca
tgccagcgcattgagctaaaacagggttacacttttatgattccctcaggttggatccat
gcagtatacactcccgaggatactctggtgttcggagggaatttcctgcacagttttaac
attcctatgcagctgaacatctacaacatcgaggaccgcacacgggtcccatcgaagttt
cgctacccgttctattacgagatgtgttggtacgtgttggagcgttacctgtactgtctg
accaacatctctcatttaacgccagagttccagagacactcgctgggcatcgggttgaaa
aaagacgactttgtcaaaccagacagcgagggtaaggaggaacagggagaggttaaacaa
gagccagacgagcaggaagacgaagctgcttctcctccggcccgtcccggggtaaaggta
catctgacgccgttggagctggaaggcatgtggcagctgctgcacaagctggagcagctc
cctgctcacaagaagtgtgtaccagtagggatccgaaacgctccagcgctcctcaacgac
atccgggccctgctagaagagcacgccaatgatgatccacaattgtcttacactggaata
cccattgtcacatggcccaaaaggccctcgtggtatacgccacgtcctccctccccttct
gtaatgtaccggccacgtccttcagtctcgggccccacgatggccccggtaccgcggccg
gccaagccagcatcgtccatctcggctctgaggcggcggcgtgttcgctgtaaacgctgc
gaggcctgcaggcgctcagagtgcggagattgtacctactgcagggacatgaagaagttc
ggcggtccgggtcgactcaagaagtcctgcatcctcagacagtgcctgactccggcgctg
cctctgactgccgtctgcgccatgtgtaaagaagggggccaggaggactcggaaggcacc
gcgaccactcagacgctcatggagtgctcagagtgcggtcagatcacacacccagaatgt
atacaggtcccaggggagggtgtgatcaataaggatcttcccagttgctgggagtgtccc
aagtgtgtccgggataagaacacagagtcttccagcagtaattcagaggaggacagtaaa
agcaccattacgtccagcgcgccctccgctcctcctgctaagcgggcgtacagggagggc
atcggggtgggtgggctgcgtttggggcgcaggggtcagcctctgccatcgcccccgtcc
ctgcctctgacgcgctcccgccgccaacccccaccgtcacagagaatcctgctccagcac
caacagagccgcaagagagccggggcgctggagctacagcaccgcaagcgtatcaaattg
gagaggagcaaactgttccagtcaacacggacgtctgtctctgtttccccaaagctcctg
cgtcagcggagtttggagagggcgagcatgatcagggcgggactcagcaggggcttgtcc
cgccggagaagcgtagcgtcctatcaggaaagagaagtgcggctcagaagccaagcgaga
agcggagctctgagaggaagggcggagagagaagagggcggagccgacaacgacaaggag
gaagagaccgagaagacggaaaggagagagaacgggctgggtggtaaagagaaccggcca
cagagatacggagcgcggcagacggaagacgagaacggagacggtcaacagaacggagag
cgcaacgccgaaagggaggaggacggaggagatcagacgcggacggactcatccggggcg
ctcgccgacgacaccagggatcagggttcatgcgtgaccgtcaccctgcagccatcgcga
ggcaggcgggaccccagcactatcgtccccaagctagaagcgaacgtatcctctgtcagc
cacacccaaagcaacagcgacttccagggcaagtccctgctccgcccaccactccggggt
gattcccgccgaacggataaagcccacgctcatacacacccgcatacgcccagatcgcaa
ctccagtctgctactctcaccaggagcgcttccaaacacgttcacgtcagtcagagctta
aagtgcagctccagagagtctcatcacaacagcacgcgagagaggaacgggaaaaacgtg
cggccagagagagggaagcctcccgcgtcctgcacgtcacccgagcagagcgggccgagt
gaaccaggctggggcaggctggtgtgggtgtccgtcttccgctacttaacacgaaccgag
ctgtgcgtctgcatggctgtgtgcaagagctggtacaaatggggttgcgataagcgattg
tggacgcatatcagcctgagccgctgccagtctatcagcccacaggccctctccggcatc
atcaagcgccagccggttacactggacctgtcccgggccaaaatatccaagaaacagctc
acgtggctcatcaaccgattaccagggttgaaagatctggtgctttcagggtgtaactgg
acgtctgtgtctgctctgagctctcccagctgtcctttactgcgctcattagacctccgc
tgggcagacggcgtcaaagacgcgcagatcagagagcttctcagcccaccaggaagtaat
aaccgttcccagctgagaaacatgcagtgcttgaggctgtgtggtctggaggtgacggag
gccacgctgaggctgatcatcaggcacatgcctcagctgacgaggctggagctctcacac
tgccctctgactgacaacgctctcaacctcctcaccgccgtgggctcgtccacacgcaac
acactcacacacctcaatctagcagggtgcagccgcctgacggaccactgtctggtgtac
ctgcagcgcttgtcctgtgtctccgtactggacctgcgcagctgtaaaggaatctctcgg
caagcctgcgagaaattcatctccgagctgtccgtcaacgccctctactgcctatcagac
gataaacttatccagagaatatcttag
DBGET
integrated database retrieval system
