Clarias gariepinus (North African catfish): 128542657
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Entry
128542657 CDS
T10780
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04510
Focal adhesion
cgar04512
ECM-receptor interaction
cgar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128542657 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128542657 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128542657 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cgar00535
]
128542657 (col9a1a)
Proteoglycans [BR:
cgar00535
]
Extracellular matrix (ECM) proteoglycans
Others
128542657 (col9a1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128542657
NCBI-ProteinID:
XP_053368583
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All DBs
Position
15:8025059..8039871
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AA seq
683 aa
AA seq
DB search
MEYSRSLRASILVILLQIFLICSAQRGPIGPRGLPGPPGFSGIDGIDGERGPGPGPDGPP
GPDGDDGKNGSNGLPGNPGADGLTGPAGDPGPVGFVGPKGEPGDPGPRGKPGVGEDGEAG
ADGEDGLPGELGKAGPPGSRGLRGAVGLPGHPGLRGPPGLWNGEELCPNSCTRGLNGHSG
LPGMKGHKGVKGESGEPGRQGHKGEEGEQGAPGDLGAQGKTGPQGLRGITGLMGPKGDRG
PRGIDGVVGAQGIQGAPGDQGQRGKVGETGPMGAQGLPGVKGILGPPGPKGEPGLPGVDA
REGIPGLPGTKGIPGKPGPPGEAGSQGLPGLPGIPGAKGVSGPKGNSGDPGVAGPIGNNG
KQGERGEQGEVGPIGPRGGPGERGVRGPDGPQGPPGERGPKGNLGLPGVPGEPGFRGQQG
DRGGVGLTGPKGEQGAPGEEGTPGEKGDVGDQGEPGEKGSIGKPGDIGNKGPEGMRGQPG
TEGDSGQPGPRGMQGERGDRGLPGIQGKPGRGPTDEHIKHVCMRVMQEQLAQLAASLTRP
PSGIAGLPGPPGPPGSPGSPGVNGFPGHAGARGLPGLKGPPGNIGLKGPKGDMGDRGDRG
PTLHGSKGIPGPPGLPGEPGQPAYGNNGRDGMRGPPGVPGMPGIPGPPGPSGLNGYCEPS
QCALRAVDPAPYKESGMKGPDGL
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggagtactccaggagtctccgagcatcaatactggtgattttactgcaaatattcctc
atctgttctgcacagaggggcccgattggtcccagggggctacccggccctccaggtttt
tctggcatcgatggcattgatggagagaggggtccaggacctggtccagatggtcctccc
ggccctgatggagacgatgggaaaaatggttctaacggacttccaggaaatccaggagca
gacggtttgactgggcctgccggagatcctggcccagttgggttcgttgggccaaaaggt
gaacctggtgatcctggacctagaggaaaacctggggttggagaggatggagaagctggt
gcagatggcgaggatggattgccaggagaattgggcaaagccggacctccaggcagccgg
gggttgagaggtgctgttggtcttccaggacaccctggactaagaggcccccctggtctt
tggaatggtgaagaattgtgtccaaactcctgcacacgtggactgaacggccatagtgga
ctaccaggaatgaagggtcacaaaggtgtcaaaggtgaatctggagaaccaggaagacaa
ggacataagggtgaagagggagaacaaggagcccctggagaccttggtgcacaaggcaaa
actggtccacagggactaagagggatcactggtttgatgggtcctaaaggtgacaggggc
cctcgtgggatagatggagttgtgggtgctcagggcattcaaggtgctcctggtgatcaa
gggcaaagaggcaaagtgggtgagaccggaccaatgggagctcaagggcttccaggagtt
aaaggcattttaggtccacctggacctaaaggagaacctggcttgccaggagtagatgct
cgtgagggcatcccaggattgccaggcactaagggtatccctggcaaaccgggtcctcct
ggtgaagctggcagtcaaggccttcctggtttgccaggcattcctggtgctaagggggtg
agcggaccgaagggaaattctggtgatccaggtgtggcaggaccaattggaaacaatgga
aaacagggtgaacgtggtgaacagggagaagtgggaccaataggaccaagaggtgggcca
ggtgagagaggggtgaggggtccagacgggcctcaagggccgccaggtgaaaggggacct
aaagggaatctcggtctacctggcgttccaggtgaacctggttttcgtggtcaacaaggt
gacaggggcggagttggtctaactggtcccaaaggcgagcagggggcacccggtgaggag
ggcactccaggtgaaaaaggggacgttggtgatcaaggagaaccaggcgagaaaggatcg
attggaaaaccaggtgatatcggaaacaaaggtccagagggaatgcgtggacagccggga
actgaaggtgactcgggacagccaggacccagaggcatgcagggagaacggggagaccgt
ggtttacctggcatacaaggaaaaccgggtcgaggaccaacagatgaacacatcaagcat
gtctgcatgagggttatgcaagaacagctcgctcagcttgcagcaagcctgacaaggcca
ccatctggcattgccgggttgccaggtcctcctggccctcccggctcccctggctcgcct
ggagtgaacggcttcccaggacatgctggagctagaggattgccaggtcttaaaggacct
cctggaaatattggactaaaaggacctaaaggtgacatgggagacagaggagacagaggg
ccgacactacacgggtctaaaggcattcctgggccaccaggtcttccaggtgaaccaggg
cagcctgcatatggcaacaatgggcgtgatgggatgagaggacctcctggtgtacccggg
atgcctggcattccaggacctcctgggccttctggtcttaacggatactgcgagccatca
cagtgtgccctcagagcagtagatccagcaccctacaaagagtccggcatgaagggacca
gatggactttaa
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