Clarias gariepinus (North African catfish): 128545729
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Entry
128545729 CDS
T10780
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
cgar Clarias gariepinus (North African catfish)
Pathway
cgar04010
MAPK signaling pathway
cgar04020
Calcium signaling pathway
cgar04510
Focal adhesion
cgar04518
Integrin signaling
cgar04540
Gap junction
cgar04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cgar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
128545729 (pdgfrb)
04020 Calcium signaling pathway
128545729 (pdgfrb)
09133 Signaling molecules and interaction
04518 Integrin signaling
128545729 (pdgfrb)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128545729 (pdgfrb)
04540 Gap junction
128545729 (pdgfrb)
09142 Cell motility
04810 Regulation of actin cytoskeleton
128545729 (pdgfrb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cgar01001
]
128545729 (pdgfrb)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cgar04090
]
128545729 (pdgfrb)
Enzymes [BR:
cgar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
128545729 (pdgfrb)
Protein kinases [BR:
cgar01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
128545729 (pdgfrb)
CD molecules [BR:
cgar04090
]
Proteins
128545729 (pdgfrb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
V-set
C2-set_2
Adeno_E3_CR2
VEGFR-1-like_Ig-like
Ig_VEGFR-1-like_5th
Motif
Other DBs
NCBI-GeneID:
128545729
NCBI-ProteinID:
XP_053372253
LinkDB
All DBs
Position
2:15430483..15477657
Genome browser
AA seq
1078 aa
AA seq
DB search
MQGVHGSPFPSTPLITALLIFLLCSAGSFLELSPIIKETTLSANASISITCSGWAPVSWR
YKRDENVPEFRTENRSRTSSVLHLENVTWRHTGVYVCSENGSEETREVAVFVPDPEEWFL
ENDFHAVTKTTDEGTIPCLVTDPKINVTLHEKDTDIQVMGKYIPTTGFTAILEDKIYKCR
GERNGKEQWSNLFYVFSIIVPEALDAHINASKTVLKQGEPLSINCTAHGVELVFFNWEFP
NKEAGNVEVLTDIISATMSMRSFLNYSQTTLEHSGQYICYAQESVSNQRTSLSINITVLE
KGFVKLSSFQSTNVSALLHENVELRVEVEAYPTPRIHWSKDGAMINGDKVINTRQEQETR
YISTLTLVRIRLEQRGYYTVYVSNGDDSKKMTFDLVVKVPPQITELSDHHLPEEKHAVTC
VAEGVPSPSVQWLSCNSMHKCSNKTAVWTPLVADTENIHIVTNVTYNESRKIHQVHSQVM
FLQPQQITVRCQAKNERGARARDIRLISSSLFSQVAVPAAVVALFVITIIFIIILIAVCR
KKPRYEIRWKVIESVSQDGHEYIYVDPVHLPYDLAWEMPRDSLVLGRILGSGAFGRVVEA
TAYGLTNAQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPL
YLVTEFCRYGDLVDYLHRNKQTFLQNYANKSHLANGNDSHICIDSDMPSEKGYVSFGSES
DGGYMDMRKEDMTEYVAMQELKDTIKYAEIQPSPYESPYQQDIYQEQGHRVDLSLVISDS
PALSYCDLVGFSFQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDN
NYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYN
ALKRGYRMAKPMHASEEVYEVMRKCWEEKFEKRPEFSYLVQEMGNMLTDGYKKRYSQVNE
SFHKSDHPAVVRSKPRTPSPFPGTFPPSSPSTIFPLSSSPNRCLEDGQETPYNGYIIPIP
DPKPEEECQEVSMPIDSPSSIAGSEAETASLESPSAEQESDDQLKERSITPDIEESFL
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgcagggagtccatggcagccctttcccctcgacacccttgataacagccctcctgatc
ttcctgctgtgctcagctggttcttttcttgagttgagtcccattataaaagaaaccact
ctgtccgctaatgcctctatctccatcacctgttccgggtgggctcctgtctcctggcgc
tacaaaagagatgaaaacgtacctgagttcagaacagaaaatcgatctcgcacctctagt
gttctccacctagagaatgtgacatggagacacacaggagtgtatgtgtgctctgagaat
ggttctgaggaaaccagggaggtggctgtctttgtgcctgacccagaggagtggtttctg
gagaatgactttcatgcagtcactaagacaactgatgaagggacaattccctgtctggtg
acagacccaaagatcaatgtgacccttcatgaaaaagatactgatatccaagtgatgggc
aaatacatacccaccactggctttacagcaatactggaagacaaaatttacaaatgcaga
ggagaacgcaatggaaaggaacagtggtccaatttattctacgtcttcagcattatagtt
cctgaggcgctggacgcccacatcaatgcctcaaagacggtgttgaaacaaggcgagcca
ctcagcattaactgcacggcccacggagtcgagctcgtctttttcaactgggagttcccg
aacaaagaagctggaaatgtggaagttctgacagacataatctcagcaaccatgagtatg
cgctcttttctgaactattcccaaaccactctggaacactctgggcagtacatctgctat
gcacaagagagcgtgagcaaccaacgtacatctcttagcatcaacatcactgtgctggag
aaaggttttgtcaagctgagctcatttcaaagcactaatgtctcggccttactgcatgag
aatgtggagctgagggtggaggtggaggcgtatcccacacctcggatacactggagcaaa
gatggagccatgattaacggagacaaggtcatcaatacgagacaggaacaggaaaccaga
tacatcagcacattaactctagtgaggatccgcctagagcagagaggatattacactgtt
tatgtttccaatggggacgattccaagaagatgacctttgatctagtggttaaagttccc
cctcagataactgaactttcagatcatcacctgccggaagagaagcatgcagtcacctgc
gtggcagaaggagtcccgtctcccagtgtccagtggcttagctgtaatagcatgcacaag
tgcagcaacaaaactgctgtgtggacccccctagtggcagatacagagaacatccacatt
gtgactaatgtcacctataacgagagccggaaaatccatcaggtccacagccaggtgatg
tttctccaacctcagcagatcactgttcgctgccaggccaagaatgagagaggagctcgt
gcacgggacatcagactcatctctagcagtctgttctctcaagtggctgttccagctgct
gttgtggctctattcgtcataaccatcatttttattatcattctcattgcagtgtgtagg
aagaaaccacgttatgaaattagatggaaggtgattgagtctgtaagtcaggacggtcac
gagtacatctatgtggaccctgttcatctcccttatgacctggcctgggaaatgcctcga
gacagtctggttctcggtcgcatactgggatcaggagcgtttggcagagtggtggaggca
actgcttatggactcaccaatgcccaatcttctactaaagtggctgtaaaaatgcttaaa
tcaacagcacgtaggagcgagactcaggctctgatgtccgagctaaagatcatgagtcac
ttgggtcctcacctcaacatcgtcaacctgctgggagcctgcaccaaacagggtcctctg
tacctggtgacggagttctgtcgatacggggacctggtggattacctgcacaggaacaag
cagacctttctgcagaactatgctaacaagagccacctcgccaatgggaacgacagccac
atctgtattgactctgatatgccttctgagaaaggctatgtgtcatttggctctgaaagt
gatggtggttatatggacatgaggaaagaagatatgactgaatatgtggccatgcaagag
ctaaaagacaccattaaatatgctgaaatccagccatctccatacgagtcaccatatcag
caggacatctaccaagaacaaggtcacagagtggacctctcactggtcatcagcgattct
cccgctctgagctattgtgatctggtgggcttcagtttccaggtggcaaaaggcatggag
tttctggcctctaaaaattgtgttcatcgggacctggcggctaggaacgtcttaatatgt
gaaggaaaactggtgaaaatctgtgactttgggctggccagagacattatgcatgataac
aattacatctccaaaggaagtacattcctccctctaaaatggatggccccagaaagcatc
tttcataacctgtacactacactgagtgatgtttggtcttatggtattttgctatgggag
atatttactctgggaggaactccatacccagatctccctatgaatgagctcttctataac
gctcttaagagaggttatcggatggccaaacccatgcatgcttcagaggaagtttatgag
gtaatgaggaagtgctgggaagagaagtttgagaagaggccagagttctcctatctggta
caggagatgggaaacatgctcacagatggatataaaaagcgatactcccaggtcaacgag
agctttcacaagagtgatcatccagctgttgtacgcagcaagcccaggaccccatctcca
ttcccgggcacattccctccttcttccccttccaccatttttcctctatcctcctcacct
aaccgttgcctagaggatggtcaggagacaccttataatggttacatcatcccaattcct
gaccccaagcctgaggaagagtgtcaggaagtcagtatgccaatagacagtccctcaagc
attgcaggttctgaggctgagacagcatcattggagtctcccagtgcagaacaggagtct
gatgatcaattgaaggaacgatccatcactcctgacatagaggagagcttcctgtaa
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integrated database retrieval system
