Cupriavidus gilardii: CR3_2593
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Entry
CR3_2593 CDS
T04050
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cgd
Cupriavidus gilardii
Pathway
cgd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cgd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CR3_2593 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgd03021
]
CR3_2593 (rpoB)
03400 DNA repair and recombination proteins [BR:
cgd03400
]
CR3_2593 (rpoB)
Enzymes [BR:
cgd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CR3_2593 (rpoB)
Transcription machinery [BR:
cgd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CR3_2593 (rpoB)
DNA repair and recombination proteins [BR:
cgd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CR3_2593 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RnfC_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ALD91794
LinkDB
All DBs
Position
1:complement(3139546..3143439)
Genome browser
AA seq
1297 aa
AA seq
DB search
MEFVSYHLSNPPFDVKECQQRGLTFHSALRAKVRLIINDRENPGKVKEVKEQEVYMGEIP
LMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEF
DPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLQAEGAQLEFVPERLRG
EVARFDIADKNGRVVVEKDKRINAKHIRDLESAGTKLISVPEDYLLGRVLAKNIIDPDTG
EVIANANDELTETLLESLREAGVKQIQTLYTNDLDQGPYISQTLRTDDTADQTAARIAIY
RMMRPGEPPTEDAVEALFQRLFYSEESYDLSRVGRMKVNSRLGRPSGEGSMVLQDEDILE
TIKILVNLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVKERLGQAETENL
MPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEV
RDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKVENGKLTDQVDYLS
AIEEGKYVVAQANATVDAEGNLIDELVSAREGSERETRMVTPDRVQYIDVAPSQIVSAAA
SLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGIERTVAVDSGTAVQATRGGVVD
YVDANRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPMVKVGDHVARGDVIAD
GASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELSVVARDTKL
GPEEITRDISNLAEAQLARLDESGITYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAI
FGEKASDVKDTSLRVPSGMSGIVIDVQVFTREGVTRDKRAQSIIDDELKRYRLDLNDQLR
IVEGDAFQRLERLLIDKTVNGGPKKLAKGAKLTKEYLDDLDKYHWFDIRPADEEVAAQLE
AVKEAIEQKRHEFDLAFEEKRKKLTQGDELPPGVIKMVKVYLAVKRRLQPGDKMAGRHGN
KGVVSKIVPIEDMPYMADGTPADIVLNPLGVPSRMNVGQILETHLGWAARGLGQRIGDML
KAQAKAQELRALLAQIYNESGKAEDLDSLSDAEVLELANNLKKGVPFATPVFDGAHEAEI
RRMLDLAYPDEVAKEKGLTASKQQVTLYDGRTGEAFERPVTLGVMHMLKLHHLVDDKMHA
RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVY
ENIVKGEHSIDAGMPESFNVLVKEIRSLGIDIDLDRY
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgtgtcgtaccacctgtccaacccgccgttcgacgtcaaggaatgtcagcag
cgcggcctgaccttccactcggccctgcgcgccaaggttcgcctgatcatcaacgatcgc
gagaatccgggcaaggtcaaggaggtcaaggagcaggaagtctacatgggcgagatcccg
ctgatgacctcgaccggctcgttcgtgatcaacggcaccgagcgcgtgatcgtctcccag
ctgcaccgttcgccgggcgtgttcttcgagcacgacaagggcaagacgcacagctcgggc
aagctgctgttctcggcacggatcattccgtaccgcggctcgtggctggacttcgagttc
gacccgaaggacatcctgtacttccgcgtcgaccgccgccgcaagatgccggtgacgatc
ctgctcaagtcgatcggcctgacgccggaacagatcctcgcgcacttcttcgtgttcgac
aacttcacgctgcaggccgaaggcgcgcagctggagttcgtgcccgagcgcctgcgcggc
gaagtcgcgcgcttcgacattgccgacaagaacggccgtgtcgtggtcgagaaggacaag
cggatcaacgccaagcacatccgtgacctggagtccgccggcaccaagctgatcagcgtg
ccggaagactatctgctgggccgcgtgctggccaagaacatcatcgacccggataccggc
gaggtgattgccaacgccaacgacgagctgaccgaaacgctgctcgagtcgctgcgcgaa
gccggcgtcaagcagatccagacgctgtacaccaacgatctggatcagggtccgtacatc
tcgcagaccctgcgcaccgacgacaccgccgaccagaccgcggcccgtatcgcgatctac
cggatgatgcgcccgggcgagccgcccaccgaggacgccgtcgaagcgctgttccagcgc
ctgttctacagcgaagagtcgtacgacctgtcgcgcgtgggccgcatgaaggtcaacagc
cgcctgggccgcccgagcggcgagggcagcatggtgctgcaggacgaggacatcctcgag
accatcaagatcctggtcaacctgcgcaacggcaagggcgaagtcgacgacatcgaccac
ctgggcaaccgccgcgtgcgttgcgtcggcgaactggccgagaaccagttccgcgccggc
ctgtcgcgcgtggagcgcgccgtcaaggaacgtctgggccaggccgagaccgagaacctg
atgccgcacgacctgatcaactcgaagccgatctcgtcggcgatccgcgagttcttcggt
tcgtcgcagctgtcgcagttcatggaccagaccaacccgctgtccgagatcacgcacaag
cgccgcgtgtccgctctgggcccgggcggcctgacgcgcgaacgcgcgggcttcgaagtc
cgcgacgtgcacccgacccactatggccgcgtgtgcccgatcgaaacgccggaaggtccg
aacatcggtctgatcaactcgctggcactgtacgcccgcctgaacgagtacggcttcctg
gaaacgccgtaccgcaaggtcgagaacggcaagctgaccgaccaggtcgactacctgtcg
gcgatcgaggaaggcaagtacgtggtggcgcaggccaacgcgacggtcgatgccgaaggc
aacctgatcgacgaactggtgtcggcgcgcgaaggcagcgagcgcgagacccgcatggtc
acgccggaccgcgtgcagtacatcgacgtggcgccgtcgcagatcgtgtcggccgcggcc
tcgctggtgccgttcctcgagcacgatgacgcgaaccgtgcactgatgggcgcgaacatg
cagcgtcaggccgtgccttgcctgcgtccggacaagccgctggtcggcaccggcatcgag
cgcaccgtcgcggtcgactcgggcaccgccgtgcaggcgacccgtggcggcgtggtcgac
tatgtcgacgcgaaccgtatcgtgatccgtgtcaacgacgacgaagccgtggccggcgaa
gtcggcgtggacatctacaacctgatcaagtacacgcgttcgaaccagaacacgaacatc
aaccagcgtccgatggtcaaggtgggcgaccacgtggcccgcggcgacgtgattgccgac
ggcgcctcgaccgatctgggcgagctcgcgctcggccagaacatgctggtcgcgttcatg
ccctggaacggctacaacttcgaagattcgatcctgatctcggaacgggtcgttgccgaa
gaccgctacacctcgatccacatcgaggagctgtcggtggtcgcccgcgacaccaagctc
ggacccgaggaaatcacgcgcgacatctcgaacctggctgaagcgcaactggcccgtctg
gacgagtccggcatcacctacatcggtgccgaggtcgaggccggcgacgtgctggtcggc
aaggtcacgcccaagggcgagacccagctgacgccggaagagaagctgctgcgcgcgatc
ttcggcgagaaggcgtccgacgtgaaggacacctcgctgcgcgtgccctcgggcatgagc
ggcatcgtgatcgacgtgcaggtcttcacccgtgagggcgtgacccgcgacaagcgcgcg
cagtcgatcatcgacgacgaactgaagcgctatcgcctggacctgaacgaccagctgcgt
atcgtcgagggcgacgccttccagcgtctggagcgcctgctgatcgacaagaccgtcaac
ggcggtccgaagaagctggccaagggcgcgaagctgaccaaggagtacctggacgatctg
gacaagtaccactggttcgacatccgtccggccgacgaggaagtcgcggcccagctcgag
gcggtcaaggaagcgatcgagcagaagcgccacgagttcgacctggccttcgaggaaaag
cgcaagaagctgacccagggcgacgagctgcccccgggcgtgatcaagatggtcaaggtg
tacctggccgtcaagcgccgcctgcagcctggcgacaagatggccggccgtcacggcaac
aagggcgtggtgtcgaagatcgtgccgatcgaggacatgccctacatggccgacggcacg
cctgccgacatcgtgctgaacccgctcggcgtgccgtcgcggatgaacgtgggtcagatt
ctcgagacccacctgggctgggccgcgcgcggtctgggccagcgcatcggcgacatgctg
aaggcacaggccaaggcgcaggaactgcgcgccctgctcgctcagatctacaacgagagc
ggcaaggccgaagacctcgacagcctgtcggatgccgaagtgctggagctggcgaacaac
ctgaagaagggcgtgcccttcgcgaccccggtgttcgacggcgcgcacgaggccgaaatc
cgccgcatgctggatctggcgtatccggacgaggtggccaaggagaagggcctgacggcg
tccaagcagcaggtcacgctgtacgacggccgcaccggcgaagcgttcgagcgtccggtc
acgctgggtgtgatgcacatgctcaagctgcaccacctggtcgacgacaagatgcacgcc
cgctcgaccggcccgtactcgctggtcacccagcagccgctgggcggcaaggcgcagttc
ggcggccagcgtttcggcgagatggaagtgtgggcgctggaagcgtatggcgcctcctac
gtgctgcaggaaatgctgacggtcaagtccgacgacgtgaacggccgtaccaaggtgtac
gaaaacatcgtcaagggcgagcactcgatcgatgccggcatgccggagtcgttcaacgtg
ctggtgaaggaaatccgctcgctgggtatcgatatcgatctggatcgctattga
DBGET
integrated database retrieval system
