Cryptococcus gattii: CGB_C8030C
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Entry
CGB_C8030C CDS
T02232
Name
(RefSeq) 3'-5' exoribonuclease
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cgi
Cryptococcus gattii
Pathway
cgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGB_C8030C
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgi03019
]
CGB_C8030C
Messenger RNA biogenesis [BR:
cgi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CGB_C8030C
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CGB_C8030C
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Acetyltransf_11
Motif
Other DBs
NCBI-GeneID:
10188002
NCBI-ProteinID:
XP_003193135
UniProt:
E6R233
LinkDB
All DBs
Position
C:complement(join(1576357..1576688,1576742..1578296,1578345..1581263,1581330..1581539,1581596..1582135,1582192..1583163,1583239..1583508))
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AA seq
2265 aa
AA seq
DB search
MSIPPPGLGGGVSRTGPPPGFGGGAAHSPVSDASATTMASSAGVAGSVGGGAVRRDGQGG
TAVIVRAQIVFLLTTFTEDSFEKASTEIRTLASTNGPEMYHHFLRRAVVVANPIIQTLIQ
HSNQYKDDPAAPPPQIPTTGQAALVWRLLVTEAARAARDVQLAPHFSFIMLSSSPSTPLP
LPSLRLFNLPPALLFSLSAYTLASPHVFPQNHASYPVFHAILAQTFQPTMELLRSPGVPF
WMMNIPGREPFTDDLTLQEARTLILALFPRAQSPASGTASRPATPTNPTSPHSSPLNSLQ
RATLLTSLTVKFSSPAIILQTLSALSPGGPPRSPGSIPLEDILFELGESLTQDEGTVEAV
VQRWWMSWLFEGSPEDVRRRVTEEACHVVHGLCEGLPLGRVVDLHGVIKGLSAVDAISWP
DVVKSFDTPMTIAAYPSSIPLLVSLVCLPSQTPVPPMAGLLPAHLDAPMWENISSLLSVL
THLTSLAPDAMPIFTMPSAPPPSVYSRIVDPPPSEQVWSKAARQQARDLQGAGLWNTLGL
IQVLVHACALAEMDHHSDREREERADIGRRATEILEKAAKLAPELVLIALEKLPKPLPSP
VVVQQTRLLAIYLSTKPSDITSSALVFHQMWEINPENLLSVLLEFYGEDENNLGRIVEIG
SELKDNLHFVLDVAALASNRELLNLERWLADGIEVKGEEFLEAIFDFVEHKIRLEFEHQH
QPENAPPLLFTLGPTVYSIFIRVVRNAPNLAREDIARFKNLRTDILILHPRLLNLRPHSK
QEQGFSEAKFSKDVVEKVDEIYQRMYSGQLKLDDVVEELKAFQKSDDSKEQDIFAHALHS
LFDEYKFVKSYPPKELTMTGLLFGAIIDYRLVKDTPAFVATRYVLDACKTPPHEPLYQFG
ITALSVLRNSLVDFPGLCRSLLEIPALHESHPVLINDIQQALIEREELDLQGGVKLAFPA
LKLPVLIEEGDDEFREPETAKKDAIMFHVNQIAPTNYEDKAKALLELFEDQYSRWFAHYF
IDVRVSLEQNRHEIYLQLLQKLGSPLLDRHILWETYRKARELLNSEATINSASERAILKT
VAMWLGRITLAQNKPIRMKELSVKDILIQGYDTKRLIVAIPFVCNLLASCRDSAVFHPPN
PWLVAILRLLSEFYHFGELRLNMKFEIEVLFSKLGVELDSFEPSNLLRMHVPPPPAQPEI
PNRLDLELQRATTELVNGSQRLGDLPGNEAYARIQQLQTEQAVQAAQDALARRVDELIAQ
LPEYLVFNQDYPIFTAPTLKRIVHHSIDRAIREIITPVIERSVTIAGISSRDLIQKDFGT
EPDAIKMRQAAHMMVQNLAGSLALVTCKEPLRSSMIANVKSMLEQNGYTDETMPDAMIAG
VVNQNLDVACAVLKKAAMEKAAKDIDVNLAPQYAARKAHQSSRSTAPFWDGASFGVAISH
TALPDPLKLRPGGLTPQQFRVYEDFGEPTRMLSSHPAANGDYLSASYQNLTLNDGLVPAE
IKTGPSPRHGFVQDVAEAPEVVASPHAIPPQTSIDKFHEVAAEIQKIVSQTPVPSISTLP
ADHELRDLIRAIVIIANQSVHRENTTLAIAQKVVQLLYRSTVQLGREVYVYLLQQLCDLS
AKVDKEVKQWLIYAEDVRKLNVPVTVTLLRAQSIGVQELDVALSHIVIRSYPSEILDFVT
QLIRECSVSDIAFLPRQAFSHSLASLLKAQEAGHATAQVDSLLEELRGPREPQSSIEGDR
SKTVIDSKLQERLAHYFLEWVRVCSSSKDPEVPFVPYITFLQKEGILSGEDVSSAFYRTA
INTAVDLDTAKLNPDGSSRFYGVDALAKLILLIVKNYGDKSGASSVGRAVYYYNKIITIM
SYSLVQRQLAMGDAFNQRPWARFFTSMLSELATIEYNLPETYIGCLKHLANNLGITQPTY
APRFAFGWVSIISHRLFMPKLLSTQRDEGWPEFHRCVMWLLRFLAPFLQSDDMAPSSRSI
FRATIRLLMLLLHDFPEFLVEFYHTLSTVIPPHCTQMRNIVLSAFPHSEAPLPDYYKRLD
QLVVEMQRFPTVRSDYIGALADGNVKAAIDQYVRTGVPTLPSIVAELKNRIAVKSLGPQG
STAVTWNHTLMHASVFYLGTTAVARTFQQTGVVSFDPKAPEVAVLAGLAHAFDGEGQYYM
LNVVADQLRYPSAHTLFFIHFMLFLFGTSVQPELSSTIPERIARILLERTIVKRPHPWGL
LVTFIELLDNEAYGFWKQPFVRAQDEVFRLFGQVRQSVAARRELQ
NT seq
6798 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatccctcctcccggcctgggaggcggggtcagcagaacaggaccgcctccggga
tttggtggtggtgcggcccattccccagttagcgatgcaagtgcgaccactatggcaagc
agtgccggagttgcgggaagtgttggcggtggtgctgttagaagagacggtcagggcggg
accgcggtgattgtcagagcacagattgtattcttgttaaccacttttacggaagatagc
tttgaaaaggcttcaactgagatcagaacgcttgcgtctaccaatgggccggaaatgtac
caccactttttacggcgagcggtcgtggttgccaacccaattatccagactttaatccaa
cattccaaccagtacaaggatgaccctgccgcgccgcctcctcagattcctaccacgggt
caagctgcgcttgtttggagattgctggttactgaagcagctagagcggctagggatgtg
cagctcgcgccccatttctcctttatcatgctttcctcctccccatcaactcctcttcct
ttgccctccctacgattgtttaacctccctcctgcgcttcttttctctctctcagcatac
acactcgcgtcaccccacgtttttccgcaaaaccacgcgtcttatcccgttttccatgcc
atcctcgcacaaaccttccaacctacgatggagcttctacgatcgccaggtgttccattt
tggatgatgaacattcctggaagagagccgtttaccgacgatttaactttgcaggaagcc
aggactttgatccttgcactcttcccgagggcccagagccctgctagtggcaccgcttct
cgacctgctacgcctaccaacccgacttcgccacattcttctcctctcaactctcttcaa
cgtgcgacccttctcacttctcttactgtcaagttttcgtctcccgctatcatccttcaa
actttatccgcgttgtctccaggtggaccgccccggtcgccaggcagcattccccttgaa
gacattttattcgagctgggtgagagccttacccaagacgagggcactgttgaggctgtt
gtgcagagatggtggatgtcttggttgtttgagggctcgccagaagatgtcaggcgaaga
gtcactgaagaagcgtgccatgtggtccatggtctgtgtgagggattgcccttaggacgt
gtcgtagatctgcatggcgtgatcaaaggattgtcggcggtcgatgctatctcctggccc
gacgttgtcaagtcatttgacactccgatgaccattgcggcatatccttcatctattcct
ctcctcgtttccctcgtatgtcttccatcacagacgcccgttccaccaatggctggtctg
ttgccagcacaccttgacgcgccgatgtgggaaaacatttcttcacttctctctgtgttg
acgcaccttacgagccttgcgcccgacgcgatgcccatattcactatgccatccgcgcct
ccaccttcagtctactctcgtatcgtcgatcctccaccttccgagcaagtgtggagcaag
gctgctcgtcagcaggcgagagatttacagggcgctggattgtggaatactctgggttta
atccaagtactggtgcatgcgtgcgctttggcagagatggatcatcattcagacagagaa
cgggaagagagggcggatattggcaggagagctacagaaattttggagaaggcagccaaa
ttggcgccagagttggttttgattgctctagagaagcttccaaaacctcttccctcacct
gtggtcgttcaacagactcgtctgttggcgatttacttgtcaactaaacctagcgatatc
acttcatccgccttagtatttcatcagatgtgggaaataaaccctgaaaaccttttatcg
gtcttgttagagttctatggggaagacgagaacaatttgggaagaattgtggagatcggc
tcagaattgaaggataaccttcactttgtcctcgatgtggctgctttggcatccaacaga
gagttgctcaacttggagcgctggttggcggatgggattgaagttaagggagaagagttc
ctcgaggcaatctttgactttgttgagcacaagatccgtctcgagtttgagcatcagcat
cagcctgaaaacgcgcctcctctgttgttcaccctcggtcccactgtctattctatattc
atccgtgtggttcgcaatgcccccaacctcgctcgtgaggacattgctcgtttcaaaaac
cttcgtacggatatactcatccttcacccccgtcttctcaatctccgaccccatagcaag
caggagcaaggcttctctgaagccaaattctcgaaggacgttgttgaaaaggtggacgaa
atctatcaacgaatgtacagtggacagctcaagttggatgacgtggtggaggagctcaaa
gctttccaaaagtctgatgacagcaaggaacaagatatttttgcgcacgcacttcactcg
ctctttgacgagtacaagtttgtcaagtcgtatcctcccaaggaattgactatgactggt
cttctcttcggtgccatcattgactatcgacttgtcaaggacaccccggcgtttgtggcg
acacgatacgtcttggatgcttgcaagactcctccccatgagcccttgtaccaatttggt
atcaccgctttgagtgtactccgtaattcgcttgttgactttcccggtctctgtcgatct
ctcttagagattcctgctcttcatgagtctcatcctgttttaatcaatgacatccagcaa
gcattgatcgagagggaagagttggaccttcaaggtggtgtcaagttggctttccctgct
ctcaaattgcctgtgcttattgaagagggagatgacgagtttagagagccagaaactgcg
aagaaagacgccatcatgttccacgtcaatcagatcgctcccaccaactacgaggataag
gctaaggctttgctcgaactattcgaagaccagtattcccgttggttcgcccactatttc
atcgacgtccgagtcagtcttgagcagaataggcatgagatctacttgcaattgcttcaa
aagctcggctcacctcttcttgatcgacacatcctctgggagacgtacaggaaagcaagg
gagttgctcaactcggaggcaacaattaactctgcttcggagcgtgcgattctcaaaaca
gtagccatgtggttgggccgtatcactcttgctcaaaacaagccaatcaggatgaaagaa
ctctccgtaaaggatatcttgatccaaggttacgacaccaaacgacttatcgtcgccatt
cccttcgtctgtaatttgctcgcctcttgcagagactcggctgtcttccacccgcccaac
ccttggttggtcgccatccttagacttctttctgagttttaccacttcggtgagcttaga
ctcaacatgaagtttgagatcgaagttcttttcagcaagctcggtgtcgaacttgactcc
ttcgagccatccaatctcctgcgcatgcatgttccaccaccccccgctcagcccgagatc
cccaaccgactcgacctcgagcttcaacgtgccacaaccgaacttgtgaatggttctcaa
cggcttggagacttgccgggcaacgaggcgtatgctcgcatccagcagttgcaaactgag
caagctgtacaagccgctcaggatgcgttggcacgtcgcgtcgacgagcttattgctcaa
cttcccgagtacctcgtcttcaaccaagattaccccatctttaccgctccaaccctcaag
cgtattgtgcaccactcaatcgatcgcgccattcgcgagatcattactcctgttatcgag
cgttctgtcaccattgccggcatctcttctcgcgatttgattcaaaaagactttggcacc
gagcctgatgccattaaaatgcgccaagctgcacacatgatggtgcagaaccttgccggt
agcttggccctggtgacgtgcaaagagccattgcgttctagcatgattgccaatgtcaag
tctatgctcgaacagaatggctacacggatgagaccatgccggatgcgatgattgcgggt
gtagtaaatcagaacttggatgttgcgtgtgcggtgttgaagaaagcggccatggagaaa
gcagccaaggatattgatgtcaatcttgcacctcaatatgcagcgcgaaaggcccaccag
agttcgaggtctactgctccattctgggacggtgcttctttcggtgttgccatctctcac
actgctcttcctgaccctctcaagcttcgtcctggtggtctcaccccacagcagtttagg
gtctatgaagactttggcgagcctacaaggatgctgtcctctcaccctgcagccaacggc
gattatctatccgccagctatcagaaccttactctcaacgacgggctcgttcctgcggaa
atcaagactggcccttcgcctcgtcacggctttgttcaagacgttgctgaggctcccgaa
gttgtcgcatcgccccatgctatcccacctcagactagcattgacaaattccacgaagtt
gcggctgagatacagaagatcgtctctcagacccctgtacctagcatttcgacccttccg
gccgaccatgagctccgagatcttattcgagccatcgtcattatagcgaaccagtctgtg
cacagggagaacacgactttggcgattgcccaaaaagttgtgcagctgttgtacaggtcc
acggtacaattgggtagggaagtatatgtgtacttgttacagcagctgtgcgatttgtcg
gcaaaggtggacaaggaagtgaagcagtggttgatctatgcggaggatgtgaggaagctg
aatgtccctgtcactgtaactctacttcgcgctcagtccattggcgtgcaagagcttgat
gtcgcactttcccacatcgtcatccgatcctatccttccgaaatcctcgacttcgtcact
caactcatccgtgaatgctcggtgtcagatatcgcattccttcctcggcaggccttctct
catagcctggcttcgctcctcaaggctcaggaagctggccatgctactgctcaagttgac
tcattactcgaggagcttcgtggcccacgagagcctcagagtagcatcgagggtgaccgg
tccaagactgtcattgacagcaagcttcaggagaggttggcacactacttcttggagtgg
gttcgggtctgcagctctagcaaggatcctgaagttccatttgtgccctacattactttc
ttgcaaaaggagggtatcctcagcggtgaggatgtctcatctgcattttaccgtactgct
atcaatactgccgtcgatctcgacactgctaagcttaaccccgatggctcgtcaaggttc
tacggcgtggatgctttggccaaactcattctactcatcgttaaaaactacggtgacaag
agcggagccagcagtgttggcagagctgtctactattacaacaagatcattacgatcatg
tcgtactccctcgtgcaaaggcaacttgccatgggtgatgctttcaaccagcgaccttgg
gccagattctttacaagtatgttgagcgagttggccactattgagtataaccttcctgag
acatatatcggctgcttgaagcaccttgccaacaatctcggcattactcagcccacctac
gcgcctcgcttcgcgttcggttgggtctcaatcatttcccaccgtcttttcatgcctaaa
ctcctctccacccaaagggacgaagggtggcccgagttccaccgatgtgtcatgtggctc
cttcgcttccttgcgcccttccttcaatcagatgacatggctccctcgtcaaggtcaatc
ttcagagccactattcgacttctcatgcttcttttgcatgacttccccgagttcctcgtt
gagttctaccatactctctcgaccgtcattcctccccactgcactcaaatgcgaaacatc
gtcctttctgctttccctcattccgaggctcctcttcccgattactacaagcggcttgat
cagcttgttgtggagatgcaacgattccccaccgttcgctcagactacattggtgcgttg
gccgacggcaacgtcaaggccgccatcgaccagtatgtccgaactggcgtccccactctt
ccttcaattgtggcggagctcaagaacaggatcgcggtcaagtctttaggtcctcaaggc
agcactgctgtcacatggaaccacacattaatgcacgcgtcagtcttctatcttggtacc
actgcggttgccaggacctttcagcaaacgggtgttgtgagctttgatccgaaggctcct
gaggtggccgtgttggctggtttggcacatgcgtttgacggcgaaggccaatactatatg
ctcaacgtggttgctgatcagcttcgatacccatccgctcatacccttttcttcatccac
ttcatgctcttccttttcggtaccagcgtgcaacccgagctttcatctaccattcccgag
cgtatcgctcgtatccttctcgaacgaaccatcgtcaaacgccctcatccttggggtcta
cttgtcactttcatcgagttgctcgacaatgaggcttatgggttctggaaacagccgttt
gtcagggcgcaggatgaggtgtttaggctcttcggccaggtgcgacagtctgtcgcggcg
cgtagggaattgcagtag
DBGET
integrated database retrieval system
