Carassius gibelio (silver crucian carp): 127947440
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Entry
127947440 CDS
T08819
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127947440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127947440
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127947440
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127947440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
127947440
NCBI-ProteinID:
XP_052400519
LinkDB
All DBs
Position
A25:7683030..7700444
Genome browser
AA seq
2381 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLVTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFAKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASPDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDCSQAHTWNVEVLIDVVKELNPNLNFKEVTY
ELDHQGFLIRDSKGLQIVVCGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGS
LSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLPGS
LSTSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQTP
KAPQPGQAITLVTTATTTTTAAKTTTISRPTAVGPKKDVPPSINTTNIDTLLVATDQTER
IVEPPENVQEKIAFIFNNLSQSNMTQKVEELKDTVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDISDLKPGNLLRDKEKLKNLEEQLSAPKKETKPPE
EMLPIITTDSVPFTVAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHINININIP
LLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARLAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDLE
QHLHAIPPALAMNPQTQAIRSLLEAVVLARNSRDGIAALGLLQKAVEGLLDATSGADTDL
LLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGINYMAVAFAMQLVKILLVDERSVSHITEADLFHTIETLMRTNAHSRA
NAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQLP
TTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVGMLTMVLGIVVGVLI
QDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFV
YAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGT
LRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDML
SEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLI
NALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLR
YPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAF
KFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7146 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacaatttctgatccaggagtgtgtgtct
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcagaagagtttgaaaccatcacctcatttagttactcagctgagtaaagttctcaag
ctaagcaaggtccaggaggtgatttttggccttgctctgctgaactccagcaacgcagac
cttcgagggtttgctgctcaatttgcgaagcagaagcttcctgatctcctccgctcatac
gtggacgcggacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctgctttcccatcttctgttcggtcagaagggctcgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgcttgcaccactgttgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggagaattaaataagaccatgatggagagttcacttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcctgacgaatgcaggaacataatcctgcagtat
ggcgtgcgagaggtgaccgccagtcaggtggccagagtgttgggcatgatggcccggact
cactcggggctgtccgatggcatcggcctacaatccatctcaaatccagtgggcggtggg
atctggagtgatgggaaggataagagtgactgctctcaggctcacacctggaatgttgaa
gttctaattgatgtggtcaaagaactgaaccccaatctgaatttcaaagaggtgacctat
gagctggaccaccaaggcttcctaatccgggacagtaaggggcttcagatagtggtctgt
gggatccagaggggtctgggaatggaggtgttcccggtggatctcatctatagaccatgg
aagcatgcagaaggccagctgtctttcattcagcactcgctgatgagtcctgaagtgttc
tgcttcgctgactatccctgtcatactgttgccattgacatcctgaaggccccacctgag
gatgacaacagagaaatagccacatggaagagcttggacctagtggagagcctcttgcgc
ctctctgaagttgggcattacgaacaggtgaagcagctcttcagcttccccatcaagcac
tgcccggatatgctagtgctggcacttctgcagatcagcacctcctggcacaccctgcgt
catgagctcatctctactctcatgcccatcttcttgggtaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtcgccctccatccgccagttgatcatg
cactctatggccgagtggtacatgagaggagagcaatacgaccaggccaagctatctcgc
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccattt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaatacgagagcatggggaaccatttatccaggcatgcgtcacgttc
ctgaagagacgatgtccctctatcatgggtggtttggccccagagaaagaccagccaaaa
agtgctcaacttcctccagaaacactggctaccatgctagcatgtctgcagtcttgtgct
gggagtgtgtctcaagagctgtcagagacaatcttgactatggtggccaactgtagcaat
gtaatgaacaaggctcggcagccgccaccaggagtcttaccaaagggacgagctcccagc
accagcagcttagatgctatttcacctgtgcagatggaccctctctctgcgatgggctct
ttgagtctaggtgtctcgtccacctcccacaccccgagcatgcaaggattccccagcctg
cagggctctgccttcagtaacccccagtccccagccaaagccttctcaaacctgcccaac
ccaaaccccagcacagccttcccaggaattaaccccctctcttctcaactcccaggttct
ctgagcacaagcttgactgggattggctcaggtttgggcatgcccgccgtcagcagcgac
cctttcggcactaggaagatgagcacaccggggctgaacccacccaccttccagcagact
gacctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagatagacgatgag
gcaaatagctacttccagcgcatctacaaccatccgccgcaccccacaatgtctgtggat
gaggtgctggaaatgctgcagagatttaaggactcaaacatcaagcgagaacgggaagtg
tttaactgcatgctgaggaatctgttcgaggagtaccgtttcttccctcagtatccagat
aaagagctgcacatcactgcttgcctcttcggggggatcattgagaagggcctggtcacg
tacatggcgctgggcttggctttacgatacgtgctggaagccttacgcaaacctttcgga
tcgaagatgtattactttggaatcgctgcactagatagatttaaaaacagactgaaggac
tatccccagtactgtcagcacttggcgtcaatagcccatttcctgcagtttccgcaccat
ttacaagagtatatagagtatggccagcagtccagagaccctcctgtgaagatgcaaggc
tccattactacacctggcagcctggctttagcccaggctcaagctcagtctcagaccccc
aaagccccacaaccaggccaggctatcaccttagtgaccacagccaccacaaccaccacc
gctgccaaaaccacaaccatcagtagacctacagctgttggaccgaagaaagacgtgcca
ccttcaatcaacaccacaaacattgacaccttgttagtggctacagaccagactgaaagg
atcgttgagcccccagagaatgttcaggagaagattgcgttcatcttcaacaacttgtcc
caatcaaacatgacccagaaggtggaggagctgaaagacactgtgaaagaagaattcatg
ccctgggtctctcagtacctggttatgaagcgtgtcagcattgagccgaacttccacagc
ctgtattccaatttcttggacacgctgaaaaacccagagtttgtcaagatggttctcaat
gagacctacagaaacatcaaggtccttcttacctctgataaggcagctgctaacttctca
gatcgatccctgctgaagaatttgggtcactggcttggaatgatcaccctagctaaaaac
aaacccatcctatacacagacctggagctgaaatctctcttgctagaggcttatgtgaaa
ggccaacaggagttactgtacgtagtcccctttgtggccaaagtcttggaatcaagtctg
cggagtgtgatctttagaccgcagaacccttggaccatgggcatcatgaacgtactggct
gagcttcaccaggaacatgacttaaagcttaacctcaagtttgagattgaggtgctctgc
aagaatctgtctttggacatcagtgacctgaaaccaggaaaccttctgagagacaaagag
aagctgaagaacttggaggagcagctatctgcaccaaagaaggagaccaagcctcctgaa
gagatgcttcctataattacaacagattctgttccttttacagttgctccttcaactccg
gccaccaccacgacctgtacggccactgggccgcccacaccacagttcagctaccatgac
ataaatgtgtatgccctggctggcctggccccacacatcaacatcaatattaacatccca
ctactgcaggcccaccctcagctgaaacagtgtgtaagaccagcaattgagcgtgctgta
caggaactggtgcacccagtggtggaccgatccatcaagatcgctatgaccacctgtgag
caaatagtcaggaaggactttgcacttgactctgaggagtctcacatgcgtgtggcggcc
caccacatgatgcgtaacctgactgctggcatggccatgatcacctgcagagagccgctg
ctcatgagcatcgccaccaacctgaagaacagctttgctgcagctttaagggctcccaca
cctcagcagagagagatgatggaagaggcggctgctcgcctcgcacaagacaactgtgag
cttgcttgttgctttatccagaagacagcagtggagaaagctggacctgagatggacaag
agactagcaactgaattcgagctgaggaagcacgctcgccaagaaggccgtcgctactgt
gatcccatggtgctcacctatcaggctgagcgcatgccagagcagatcagactgaaggtt
ggtggagtagatcctaaacagctggctgtttatgaggagttcgcccgaaatgttccaggc
ttcctacccagtaatgacctgtcccagcccactggtttccttgcccaaccaatgaagcaa
caggcatggcccactgacgatgtggctcacatctacgataagtgcatttcagacctggag
cagcacctgcatgcaattccacctgcgctggctatgaacccacagacccaagccatacgc
agccttttggaggcagttgtcttggctaggaactcccgtgatggcatcgctgccctgggc
cttttgcaaaaggctgtggagggtctgcttgatgccaccagtggtgctgatactgatctg
ctgctgagctacagggagtgccatctgctggtgctaaaagccctacaggatggtcgcgcc
tacggcccacagtggtgcaacaaacaaatcaccagatgcctgattgagtgcagagatgaa
tacaagtacaacgttgaggccgtggagctcctcatcagaaaccacttggtcaacatgcag
cagtatgacttacacctggctcagtccatggagaacgggatcaactacatggccgtggca
tttgccatgcagctggtgaagatcctgctggttgacgaacgcagcgtgagtcacatcact
gaagcagatctcttccacaccattgagacactgatgaggaccaacgctcactccagagcc
aatgctccagaaggtttgccccagctgatggatgttgtccgctccaactacgaggccatg
atcgatcgtcaccatggtgggccgaacttcatgatgcactctgggatttctcaagcctct
gaatacgatgacccaccaggccttagagagaaggcagagtacctgcttcgagaatgggtc
aacttgtaccattcggcagctgcaggaagagacagcacaaaggctttctctgcatttgtt
ggccagatgcaccagcagggcatcctgaagaccgatgacctgatcactcgcttcttccga
ctgtgcaccgaaatgtgtgtggagatcagttaccgtgctcaagctgaacagcagcttcca
accaccagccccgctattatcagggccaagtgctaccataacctggatgcttttgttcgg
ctcattgcgcttcttgtcaaacactccggagaggccaccaacacagtcactaaaatcaac
ctgctcaacaaggttggaatgcttacaatggttctcggcattgtggtgggtgtactgatt
caggatcacgatgtgaggcagacagagttccagcagcttccgtaccacagaatcttcatc
atgctcctgctggagcttaacgcaccagagcatgtgctggagaccatcaactttcagacg
ctcactgctttctgcaataccttccacatcctgaggccaactaaagcacctggttttgtc
tatgcttggctggagctcatctcgcaccgtatcttcattgccaggatgcttgcacatacc
ccacaacagaagggttggccaatgtatgcccagctgctgatagacttgttcaaatatctt
gcacccttcctaaggaatgttgaactcaacaaacctatgcaaattctctacaagggaaca
cttcgtgtgctgcttgtcctgcttcatgactttcccgaattcctgtgtgactaccattat
ggcttctgcgacgtcatcccgcctaactgcatccagctgaggaacctgatcctgagtgcc
ttcccccgcaacatgaggcttccagaccccttcacccctaatctgaaggtggatatgctg
agtgagatcaacattgctccccgcatcctcacaaacttcaccggtgtgatgccgtcccag
tttaagaaggatcttgactcttacctcaagacccgttctccagtcacttttctttctgag
ctgcgcagcaacctgcaggtatccaacgagccaggcaaccgctacaacattcagctaatt
aatgctctggtgctatacgttggaacccaggccattgcccacatccacaacaagggcagc
actccctccatgagcaccatcactcactcggctcacatggacatcttccagaacctcgca
gtcgatctagacactgagggccgctatctgttcctgaacgcgatagccaatcagctgcgt
tatccaaacagccacacacactactttagctgtaccatgctgtatctgtttgccgaggct
aacgctgaagccattcaagagcagatcaccagggtcctgctggagaggctgattgtgaac
aggccgcacccgtggggtctgctcatcaccttcattgagctgatcaagaaccctgccttt
aagttctggagccatgattttgtgcactgtgcgccagaaatcgagaagttgttccagtcg
gtggctcagtgctgcatggggcagaagcaagcccagcaggtgatggagggaaccggtgcc
agttag
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integrated database retrieval system
