Carassius gibelio (silver crucian carp): 127962477
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Entry
127962477 CDS
T08819
Name
(RefSeq) DIS3-like exonuclease 1
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127962477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127962477
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
127962477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
CSD2
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
127962477
NCBI-ProteinID:
XP_052418017
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All DBs
Position
B7:complement(16227623..16236614)
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AA seq
1062 aa
AA seq
DB search
MEGPIMIKTEKVLHLNSSKGRKVRVVREHYVREQVPCGSSLCQADCLNDGKVLSEDVTHY
VVPDVGVVRDFLEILEFRELQGIVFTQTAYQTVQHTRGRRHYNRLRALLKDPRHDCVLFA
NEFQQYCHCPRDKGESQDKWHTRNVYNAAVWYYNHLAGLQPVVMITEDNDAISEFSALNS
GVYVISTQDYLLSFWPDLQAAHDLYSSIAQTLQERESEAVEKVYTEHLPAEVLEAGIKSG
RYIQGILSVNKHRAQNEAFVRYEGSASKNTDLNSDVLINGAKLRNRAVHGDMVVIELLPR
NEWKGRTMALTEGQGEEQPLEETQSQPMPSGRVVGILQRNWRDYVVTFPPLEEVQSQSRN
SQKILVIPWDYRIPKIRISTQQAEALQDQRVIVRLDSWESTSVYPSGHCVRVLGKAGELE
TEIQTILLENSIHVPPFSEAQLREMPVNTEENRWQMDSSEVSSRRDLRDTHLVFSIDPKG
CEDVDDTLSVRTLPGGKRLELGVHIADVTYFVREGSLTDLEARSRATTYYLADRRYDMLP
AVLSADLCSLLGGVDRYAMSVLWELDAETLDVCTVWYGRTLIRSSYQLHYELAQSLLNGE
EVEVPELSRLKGSQRDQKLVELLQALETLTRVARHLRAQRDKGGALELEGVEVRAQLDEE
KNITALVPKQPLEVHETVAECMIYANHWVARKIQESFPHQALLRHHPPPKQEFFSQLIDC
AKARGFSIDTRSNRALADSLEQAVDRQDPLVNRLLRMMATQAMSNALYFSTGACPEEQYY
HYGLALDRYTHFTSPIRRYADVLVHRLLMAAIQLEKEGSLAKPLASNKELEELAQHINNK
NRAAQHAQKQSTELFQCLYFRDKDSKTDERCVADAVIYAIRANGFLAFIPQYGVKGAVYL
KDREGQVVSVDGDGRCEWKAGTLQRYPDRISSCTSTGTHTFYLFSHVTVRISVEPSRCHA
DSLCLELIRNKPHCPVQPESQPAGGGRSELVQEVVRRAEEASLQAVEERGRKPKLSREER
QFRQSRTPNLYVLLQEISELALLDLSVCQIRNTEEQTSTASS
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtccgatcatgattaagaccgagaaagtgttacatttgaacagctcgaagggt
agaaaggtccgtgtggttcgggagcactatgtgagggagcaggtgccctgtgggagctcc
ctctgtcaagcggactgccttaacgatgggaaggtgctgtctgaagatgtgacccactat
gtggttcccgatgtgggggtggttcgggatttcctggagatcctggagttcagggagctg
caggggatcgtatttacccagacagcctaccagactgttcagcacacccggggacgcagg
cactataacagactgcgtgctttgctgaaggaccctcgccatgattgtgtgctgtttgcc
aatgagtttcagcagtactgccactgccccagagacaagggcgagtctcaggacaaatgg
catacaagaaatgtgtacaatgcagcagtttggtactataatcatctagctggactccag
ccggtggtcatgattacagaagataatgatgctatttcagaattcagtgccttaaacagt
ggagtgtatgtcatctcaactcaggattacctgttaagtttctggccggacctgcaggcc
gcccatgatctgtacagctccattgctcagaccctgcaggagcgagagagtgaggcagta
gagaaggtgtacactgaacacctgcctgcagaggtgctggaggctggaataaaatctggc
aggtacatccagggcatcctcagtgtgaacaaacatcgagcacagaatgaggcttttgtc
cgttacgagggttcagccagcaaaaatacagatctaaatagtgatgtgctgatcaatgga
gcaaagcttcgtaaccgggcagtgcatggagacatggttgtcatagagctgttgccccgt
aatgagtggaaaggcaggactatggcactaacagagggtcaaggggaggagcagccactg
gaggaaacacagagtcagcccatgccctcaggcagggtggtgggtattctgcagaggaac
tggagagactacgttgtgacttttcctcctcttgaggaggtgcagtcacagagtcgaaat
tcacaaaagattctggttattccatgggactaccgcatccctaaaatccggatcagcaca
cagcaggctgaggctttgcaggatcaaagagtgattgtgcgtctggattcgtgggaaagt
acttctgtgtaccccagtggccactgtgtgagggtcctggggaaagcaggcgagctggag
actgagattcagaccatcctgttggagaactctatccatgtcccaccattctcagaggca
cagttgcgagagatgccggttaacactgaggagaaccggtggcagatggacagcagtgaa
gtgtcgtctcggcgggacctgagagacacacacctggttttcagtatcgatcccaagggc
tgtgaggatgtggatgataccttgtctgtgcggactctgcctgggggaaagcggttagag
ctgggcgtccacattgccgatgtcacttactttgtcagggagggctctcttacagatcta
gaggcacggtcaagggcgaccacttactacctggctgaccgcaggtatgacatgctgcca
gcagttctgagtgctgacctgtgctccctccttggaggagtggaccgctatgccatgagt
gtgctgtgggagctggatgctgagactctggatgtgtgtacagtttggtacggtcgtact
ctgatccgctcctcctatcagcttcactatgagctggcccagagtctgctgaatggcgag
gaggttgaggtacctgagctaagccggctcaagggttcacagcgagaccagaaacttgtt
gaactcttgcaggccctagagaccctgacgagggtggccagacacctccgtgcacagaga
gataagggtggtgctctggagttggagggggtggaggtgagggctcagctggatgaggag
aagaacattacagcacttgttcccaaacaacctctggaagttcatgagactgtggcagag
tgtatgatctatgccaaccactgggtggcacgcaagatacaggagagctttccacaccag
gctctcctgcgtcatcacccaccacccaaacaggagttcttcagtcagctcatcgactgt
gccaaggcccgtggcttcagtattgatacaaggtcaaacagagctcttgctgattctctg
gaacaagctgtggatcgtcaggaccccctggtgaacaggttattgagaatgatggccacc
caggcaatgtctaatgccctttacttctccacaggagcctgcccagaagaacagtactat
cactatggtcttgctctggatcgatacactcactttacctctccaatcagacgctatgct
gatgtattagttcaccggctgctcatggctgctattcagctggagaaggaaggatcgcta
gccaaacccttggccagtaacaaagaactcgaggaactagctcaacatatcaacaataaa
aacagagcagcacagcacgcacagaagcagtccacggagctcttccagtgcctctacttc
agagacaaagactccaaaacagatgagcgctgtgtggctgatgctgtcatctatgctatc
cgagctaacggctttcttgccttcataccacagtatggtgtgaagggagctgtgtacctt
aaggatcgagagggtcaggtggtcagtgtcgatggagatggaaggtgcgagtggaaagct
gggacattgcagagataccctgacaggatcagcagctgcactagcactggaactcatacc
ttttacctcttcagccacgttacagttcgtatctctgtagaaccgtcgcgctgtcatgcc
gacagcttgtgcctggagcttatcagaaacaagccccattgccctgtgcagcccgagtcc
cagccagctggtggcggtcggtctgagctggttcaggaagtagtgcgcagggcagaagag
gcttccctccaggcggtggaagagagggggaggaagcccaaactgagcagggaggagagg
cagttcagacagagcagaacaccaaacctctatgtcctgttacaggagatcagtgaactt
gctctactggatctgtctgtctgtcaaatcagaaatacagaggaacagaccagcactgca
tcttcttag
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