Carassius gibelio (silver crucian carp): 127963409
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Entry
127963409 CDS
T08819
Name
(RefSeq) nephrocystin-4 isoform X1
KO
K16478
nephrocystin-4
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cgib03037
]
127963409
Cilium and associated proteins [BR:
cgib03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
127963409
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DPCD
Motif
Other DBs
NCBI-GeneID:
127963409
NCBI-ProteinID:
XP_052419266
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Position
B8:complement(11935222..12085709)
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AA seq
1427 aa
AA seq
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MSDWNTAFLSSRVIPPHSQTARQAPGASRGLQLLFRHIDGLHLKQSESPASLQYQLRVTL
FDSGHQHFFGRTWRSGSYSVSGMQGQSGRVLFNEVVYFHTSLCLSSVVAVVELVSLSTRA
DGSQDAVGSGFGLLQLFTGHADTSISQGEGRLSLFNGTPRALLHPELKDPLQLNAVLSVM
EGSQLLYSIQPHPALTPIMHLLPPNILVSGHDSIPGVVPSTDTGTADVLRKPRLLKSFSC
VLDGLRVALLPSVEVFESNLLQLLNRDCQNTNRGVEGRSVVVQERRLLVGVHNGWGWVEK
PHVLVLECEAGGSGASRAHGASASGSFRQTSTDKLSDGLSLRGSVELKMMRDVAFSIVFQ
LQYVFSCPLAGDGQMTSTAVPRAAFMQCVRWCAWSLFSDPEGPGENVCLHLQGGALPNPW
GVMVYSASTQQTNSGKCVIKFKFSSSVEGASCGTALNVSHRETSPPKKLLSAPQDERILE
PMASTQQSPRGPALSLSQLVATSRYPTMSHTVGSPWQQQLPSLLSPSPMASAHQLSHVER
PVAGSIAHLELSVQEREGNRSEEEDEMQELTFTPVHAPVITLGTHTAGSSRSTSRRSLAQ
LFSSGFPQILDTQNQVAEVLDASEPVNFNPQREEADPLQANTLILQFLAFTRVPQAGVIS
DWPRTVHFTFQLYRFPPVTTERLKLLDPERNSKLKSGSDYPCVLSVINKDGTFSSGCPGL
QLQYRVDPQFLKPGERGWFLRYLALHSLQIDVWDSESLMLIGSAAVELKHMLRQGRAAVQ
VNHELEVITTEYLQDASFASRHDNKHSATPAISVYTTVKGILHLRLGNVGGSVKNSQSSL
DLPPSLSHVVQPSDAPQGFAGGGVPALTVLQLNASNARRARRLPEIDSELARLLQSTMRE
VGGATLHQQAEAKEVRQRKIDRMAAVRQLEEQKATPPFQDSSNITSHRAERVQHSRDLRV
IEAYRERCKAQEITNMLSQAITTKHTLYASLGTAEFFEFVLKNPFNVPQTVTIECDDPEL
CVMVKTEEWRYFKELTKTLTPLEEEMFHVKESTQTPQVYLRPKESVHVPFKYQTFICGHT
FPLQDMKGLKTSRSPQMAQKHLSNTINAKSIKVLFRGEDRKPLAICQVDVEPMPHVVDQT
FRFYQPELTFLKKAIRLPAAWDDTADGSATLHVRCSDHNVICHTTNLTPGEPQDVYLKVP
GSPSPQIRKFFITIFTDPWLASPAQIWQVYVHYLQRMDLSCVCGTLSWHSLVLHGTQTIR
RVKCYTSHPLELQVDPGEVFALPAHGVQDVCVGLRTLRPGSRFFYLNVVDVDTRQLVASW
LLCITCRQPVISKAFEISVPVDGGKGSNKKISFTNPYSSSRVFNLRTDRPDLLQFKEEQF
QIGGGELYTIGLRFAPSQNPGMEEILIFINDKQDKNEDTYCVRVQYR
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactggaacaccgctttcctgagcagccgcgtgatcccgcctcacagtcagaca
gccagacaagctccaggagcttctcgaggtctacagctgctcttcagacacatcgatgga
cttcacctaaaacagtcagagtcaccggcatcgctccagtatcagctgcgcgtgaccctg
tttgactcgggtcaccagcacttcttcgggcgcacatggaggagcggctcatactctgtc
agtggcatgcagggtcagagcggtcgagtgctcttcaatgaggttgtgtacttccacact
tcattgtgtttgagttctgtggtggcagtggtggagttggtgtctctgtcaaccagagca
gacggttcccaggatgcagtggggtcagggtttggactgctccagctcttcacaggtcac
gcagacaccagcatctctcagggggagggcaggttgagtctgttcaatgggacccccaga
gccctcctgcacccagagctgaaagaccctctgcagttgaatgctgtattatcagtgatg
gagggctctcagctgctctactccatacagccacacccagctctcactcccatcatgcac
ctgctcccgcccaacattctggtgtctggacatgacagcatccccggtgtggtgccgtcc
acggacacaggcacagcagatgtgctgcggaaacctcgtctattgaagagcttctcgtgt
gtgttggatggcctacgtgtggcactcttgccctccgtggaggtcttcgaatctaaccta
ctccagctgctcaacagagactgccagaatacaaacaggggtgtggagggacgctctgtc
gtggtgcaggagcgcagactgctggttggggttcataacggctggggttgggtggagaag
cctcatgtgttggtgctggaatgtgaggccggagggagcggagcatccagggctcatgga
gccagtgcaagcggcagcttcagacagacctccacggacaaactcagtgatggactgtct
cttcgtggcagtgtggagctgaagatgatgagggacgtggctttcagcatcgtcttccag
ctccagtatgttttctcttgtcctctggctggagatgggcagatgacatccacagctgtg
cccagagcagcgtttatgcagtgtgtgcgttggtgtgcttggagtctgttttcggatcct
gagggccctggagagaatgtgtgcctccacttgcagggcggtgctctccccaacccttgg
ggtgtcatggtctattctgcaagcacacagcagactaattcggggaaatgtgtcatcaag
ttcaagttttcgtctagtgtggaaggagcttcttgcggcacggcattgaatgtgagccac
cgggaaacatcgccacctaagaagttactttcagcaccccaagacgaacgcatcttggag
ccgatggcttcgacgcagcagtctccacgcggcccagcgctgtctctctctcagctggtt
gcgacttcacgctacccaaccatgagccacacggtggggtctccatggcaacaacagctc
ccctctctgctttctccctccccgatggcatcggcccaccagctgtcacatgtcgagcgt
ccagttgccggcagcatagctcatctggagctgagtgtgcaggagagagagggaaacaga
agtgaggaagaggatgagatgcaggagctgaccttcactccagtgcacgcccctgtcatc
accctcggaacacacactgctggctcctccagatcgacctcccggagatctttggcccag
cttttctcctctggttttccacagatcctggacactcagaaccaggttgctgaggttctg
gatgcttctgagcctgtgaactttaacccccagagagaagaagcagatcctctgcaggcc
aacactctcatccttcagttccttgcttttaccagggtcccacaagctggtgtaatttca
gactggcccagaactgtccatttcaccttccagctttaccgatttccccctgtcaccacc
gagcgtctgaagctgcttgacccggagaggaacagcaagctgaaatccggctctgattac
ccctgtgttctctctgttatcaacaaggacggcacattcagctctggttgtcctggtctg
cagctgcagtacagagttgacccgcagttcctcaagccaggcgaacgtggctggttcctg
cgatacctggcactccactccctgcagattgatgtctgggacagtgaatccttaatgctt
attggctcagctgctgtggagctgaagcatatgctccgtcaaggccgtgcagccgtccag
gtgaaccatgagctggaagtgatcactactgagtacctgcaggatgccagctttgccagc
aggcatgacaacaagcacagcgccactccagccatcagtgtctacactaccgtaaaagga
attctgcatctgcggcttggcaacgtcggtggcagtgtgaaaaattcccagagttctttg
gatcttcctccatcgctctcccatgtggtccagcccagcgatgcccctcagggttttgca
ggaggaggtgtccccgctttaacggtcctccagcttaacgcaagcaatgccagacgagcc
cgccgattgccagaaattgacagtgagctggccagactgctacaaagcaccatgagggaa
gtaggcggagccacactgcatcagcaggccgaagcaaaggaagtgcgccagaggaagatt
gacagaatggcagctgtccgtcaacttgaggagcagaaagccacgcccccttttcaggac
agctcaaacatcacgagtcatcgggcagagcgtgtgcaacattcccgtgacctgcgtgtg
attgaggcctatcgtgagcgctgtaaagcacaggagatcaccaacatgctctctcaggcc
atcactaccaaacacactctctacgcctcgctaggaacggcagagttcttcgaatttgtg
ctcaagaatccattcaatgttcctcagactgtcactattgaatgtgatgacccagagctc
tgtgtaatggtgaaaactgaggagtggagatatttcaaggagttgacgaagactctgact
cctctagaggaggagatgtttcacgtgaaggagagtacacagactccacaggtttacctg
cggcccaaagaaagcgtccatgtccccttcaagtaccagaccttcatctgtggtcacacc
ttccctcttcaggatatgaaaggcttaaagacttcaagaagtccacagatggctcagaaa
catctgtccaatacaattaatgccaaatccatcaaggtgctgttccgcggggaagacaga
aagcctctggcgatctgccaggtggatgttgaacccatgccacatgtggtggaccagacc
ttccgattctaccagcctgaactcacctttctaaagaaggccattcgcctgcctgcagcc
tgggacgacacagcagatggttctgccaccctccatgtgcgctgcagcgaccacaatgtc
atctgccacaccaccaacctgactccaggagaaccacaggatgtttacctgaaagtacct
ggtagcccaagtccacagattaggaaattcttcatcacaattttcactgacccttggctg
gcctcccctgcgcagatctggcaggtatacgtgcattacctgcaaaggatggacctgagc
tgtgtgtgtggcactctgagctggcattccctggttctgcacggcacacaaaccattcgc
agggtcaagtgctacacgtcgcatcccctcgagcttcaggtggatccaggtgaagttttt
gctcttcctgctcatggagttcaggatgtctgtgtgggcctgaggactctgcgccctgga
agccgtttcttttacctcaatgtggtcgacgtggacactcggcagctggttgcctcctgg
ctgctgtgcatcacatgtcgacagcctgtaatctccaaggcgtttgaaatcagcgttcct
gtagatggagggaagggcagcaataagaaaatcagtttcacaaacccctactcgtcctcc
agagtattcaatctgcgcacggatcgcccagacctgcttcagtttaaagaggagcaattt
cagattgggggaggggagctgtacaccatcgggctgcgctttgctccaagtcagaaccct
ggcatggaagagattctcatctttatcaatgacaaacaggataagaacgaggacacttac
tgtgttagggttcagtaccgataa
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