Carassius gibelio (silver crucian carp): 127998904
Help
Entry
127998904 CDS
T08819
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127998904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
127998904
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
127998904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_14
TPR_16
TPR_8
TPR_17
TPR_11
TPR_12
TPR_CcmH_CycH
TPR_9
ANAPC3
Fis1_TPR_C
ARM_TT21_C
PknG_TPR
TPR_MalT
SHPRH_helical-1st
TPR_15
TPR-S
TPR_21
HAT_PRP39_N
COG4_N
DUF6894
Motif
Other DBs
NCBI-GeneID:
127998904
NCBI-ProteinID:
XP_052448105
LinkDB
All DBs
Position
A5:17314888..17335591
Genome browser
AA seq
1568 aa
AA seq
DB search
MSSKEVKAELKSAREAIKNKEYKEALKHCKAVLKLEKNNYNAWVFIGVAATELQQPDQAQ
SAYRKATELEPEQLLAWQGLSNLYEKSDQADFKAELPKIYQKLITLYESSDKAKCYEVSK
KLVEVYQSEKNYLQVARVWRRLIEVRAAEEGVECSELHELWKEMVRLLQDTVEDQDNETQ
QHLVLAFERAFQVMVDVPSDAHSSLSLDYIKCLSKLPHEEFKLKEACDATMSLYPNLSYP
LEAMSEHYIRTGDCSERAVRCFSRLLKLDPNNSQAHFGLGIKACQERKYEDAIKKISLGL
KCMRSSIIGWYNLALAHLKMHKYSDSATASSQGLKSSVGNSDDWTQKLQKLKLEALVRTG
RDQDADEALQILTQISDAKNDPVLLALKGRAHLQKGQTEEAFQVSVELLSSHPGSVEGLT
LKGLAHVAKEQHTQAEESFLEALSGSPDNGELFFLLGRLYWNMGEEMRRDRSKAHTHLLK
AAKLDPCLGSVFRFLGHYYREVAKDQGRARGCYKRAFELDSSDAEAGAATVDLSMEQGDM
DSALTVLQSVTERATPGSAKWAWMRRGLYHLKIGQHQQATADLQAALRADPQDWVCWECL
GEAYLNRRSFTAALKAFDKAHTLQPTSIYSLYQTAAIKQILGRFKEAAAEYRQILEQEDY
VPALKGLGECLLALARNALDDYLDGRAVDLIQDAIHYLFRAVKQRPDLSCLWKLLGDACT
ASRTVSPNRARVLVPGALCGMDPPDQSHTLDQRQLLTLGERCFGRALKLMPEAPSLWCDL
GLNYYHQSRLLNCLYPEHDAQSLLEKAMQCVKKAIMLDSANHTYWNTLGVVAMAKGIENF
ALAQHCFIKSVKAESNNVVAWTNLGALYLKKGNLELSHEAFKIAQSLEPLYVNCWIGQAI
IAETVGSFDTMDLFRHTTELSTHTEGVKGYAYCVCSTLLDKSNRDSELYLYNIVQMNAIS
AAQVALSKYTERIQTDPDAFIMLGYLNTHLQLKKQATEAYRRAVELLQLSPHKDKLSFAL
RGYGRALSDDGQWEEAVRIYSSTPLEELHDLIGLALACFRIGRLPESVQAYEKALVVASS
EKEKACILTALALIQHRLGSMDHAKTLLFKCSMLKEPVPESLQCLCALGLVHGDVTLASA
TLTELLKLGEPIGGAVEERCLLTCTLLALQGNFSGVHREAARAIHRNPGNPSLWALLSRL
VPQYCPNKADGGAVAGSVACHASLTLGKRALLYSGVNQLASGRHSGEDRRRNALKTIQRA
VLLCPDDPAGWAGLMAACHTENTACLLTGSAPCREDLERAHMTLVSEKVKSLQAEDGLLA
QALEGWVLQQAVTGLKQSSQYDQAETLCSQVLSVSPEHPVVFLMLRQVQCERLMLSKAGN
CVPPAVLDQLSAVVMANHTSVSAWHWLAEVYRSQGLLAQASVAYRQSLQLASQLGDHFGK
MSSLLRLALLALMPCLAGVCVPEWKDLVLEASAEVLKMGSSPVALLFQALLQFSLKMGAR
ETRRLLEKIVYSSASGNSETIVSVARWYLLRHLHAKDDLELIDTLLVKATAEGDSRLVDF
HRRLYPSN
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaagaagtaaaagctgagctaaaaagtgccagagaagccataaaaaataaa
gagtataaagaagctttgaaacattgtaaggctgttctcaaacttgagaagaataactac
aatgcctgggtgtttattggagtggcagccacagagctgcagcagccggatcaggctcag
agcgcctacagaaaggccactgaactggagccagagcagctgcttgcatggcagggttta
tcaaatctgtacgaaaaaagtgaccaagcagatttcaaagctgagctgccaaagatttac
cagaaacttattacactgtatgaaagctcagacaaagcgaaatgttatgaagtgagcaag
aagttggtggaagtctatcagtcggagaagaactatttacaggtggccagagtgtggagg
aggttaatcgaggtgagggcggcagaggaaggggtggagtgctcggagctgcacgagctg
tggaaggagatggtcagactcctgcaggacactgttgaggatcaggacaacgagacccaa
cagcacctggtattagcatttgaaagagcttttcaagtgatggtagatgtgcccagtgat
gcccacagcagcctttcactggattacattaaatgtctttctaagcttcctcatgaggag
ttcaagctaaaggaagcttgtgatgccacgatgtccctctatccgaatctctcctaccct
ttagaggccatgagtgagcactacatcagaacaggcgattgcagtgagagagccgtccgc
tgtttcagccgtctcttaaaactggatccaaacaactcgcaagctcactttggtctgggt
attaaagcttgccaggaaagaaaatatgaggatgccatcaaaaagattagtttgggactg
aagtgtatgcgctcctccatcattggctggtataatcttgctctggctcacctaaaaatg
cacaaatactctgacagtgccacagcttccagccaagggctgaagtcgagtgtggggaac
tctgatgattggactcaaaagctgcagaagttgaaactagaggctctggtgaggacagga
agagaccaggatgctgatgaagctctgcagatccttacacagatttcagatgccaaaaat
gaccccgtgcttctagcgttgaaaggaagagctcacttgcaaaagggccaaactgaggaa
gcatttcaggtttcagtggagctgctgagctctcacccaggatccgtggagggtctcact
ctgaagggactggcacatgttgctaaagaacagcacacacaagctgaagagagctttctg
gaggctttatccggaagcccagataatggggagttgttcttccttctggggcgcctgtac
tggaacatgggagaggaaatgcgaagggaccgcagcaaagcccacacacatctactcaag
gctgctaagctggacccgtgtcttggttcagtgtttcgtttcctgggtcattactataga
gaggtagcaaaagatcagggcagagccagaggctgctataagagagcgtttgagctggat
tcctctgatgccgaggctggagcggccactgtagacctcagcatggagcagggggacatg
gactcagctctgactgttctgcagtccgtaactgagagagccactccaggctctgccaaa
tgggcctggatgaggagaggtctgtaccacctcaagattggccagcatcaacaggccact
gcagatctgcaggcggcgttgagggctgatcctcaggactgggtgtgctgggaatgttta
ggtgaggcttacctgaaccgcaggagtttcacagctgccctgaaagccttcgataaagca
catacactgcagcctacttccatctacagtctctatcagaccgccgccatcaaacagatc
ctgggccggtttaaagaggccgctgcagagtacaggcagatcttagagcaggaggactac
gtgccggcactgaaaggtctgggtgaatgtttgctagccttggctagaaatgcactggat
gactatcttgatggaagagctgtagatttgatacaggacgccatccattacctcttcaga
gctgtaaagcaaaggccagacctgtcatgtctgtggaagttactaggtgatgcctgcacc
gcctccagaacggtgtccccaaatcgagccagagtgctggtgcctggagctctatgtgga
atggatccacctgatcagagccatacactggaccagagacagctcctcactcttggagaa
aggtgctttggtcgtgctttaaaactgatgccggaggcccccagtctgtggtgtgacctc
ggcctcaactactaccaccaatccagactactcaactgcctgtatcctgagcacgacgca
cagtctctgctggagaaagccatgcagtgtgtgaagaaggcgatcatgcttgacagtgca
aatcacacatattggaacaccctcggggtggtcgccatggcaaagggaatagaaaacttt
gcacttgcacaacactgcttcatcaaatccgtaaaagctgagtcaaataatgtggttgca
tggaccaaccttggcgctttgtatctgaagaagggaaatctagagctctctcatgaagct
ttcaagattgctcagtctctagagcctctctatgtgaactgctggatcggacaggccatc
attgctgagacagtgggcagttttgacaccatggatcttttcaggcacaccacagaactg
agcacacatacggagggagtgaagggctatgcatactgtgtttgctccacactgctggac
aagagcaacagggattcggagctctacctctacaacatagtccagatgaacgccatctct
gcagcccaggtggctctgagcaagtacactgagaggattcagacagacccagacgccttc
atcatgctcggatacctgaacacacacctgcagctgaagaaacaggccaccgaggcatat
cgcagagctgtcgagttgcttcagttgtcccctcacaaagacaagctcagctttgctctg
aggggttatggacgtgccctcagtgatgatggacagtgggaagaagcagtgcgtatttat
tcctccacaccactagaggagctccatgatctcatcgggcttgcactcgcttgtttcaga
atcggtcgcctgccagagagcgttcaggcctatgagaaagcccttgtagttgcctctagc
gagaaggaaaaagcctgtattctcactgcacttgccttgatacagcacaggctgggcagc
atggatcatgccaaaacgcttctcttcaagtgttccatgctgaaagagccagtaccagag
agtctgcagtgtctgtgtgctctgggtttggttcatggtgatgttaccctggcaagtgct
acgcttaccgagctgctaaaactgggggaacctataggaggcgctgtggaggagcgctgt
cttctcacttgcaccctgctggccctgcagggcaactttagcggcgtacacagggaggct
gctagggctatacacaggaacccaggaaatccatctctctgggctcttctctccagactg
gtcccacagtactgccccaacaaagccgatggaggggctgtggccggcagtgtggcatgt
catgccagcttgacgcttggaaagagggcgttgctgtacagtggagtgaatcaactggcc
tcaggccggcactctggtgaggacagaagacgcaatgctctgaaaacaatccagagagct
gtactgctgtgtccagatgatcctgctgggtgggcggggctaatggccgcctgtcacaca
gagaacacagcatgcttactcacaggctccgccccttgcagagaagatctggaaagggcg
cacatgaccctggtgtctgaaaaagtgaagagcctacaggcagaggatgggctcttggct
caggccctggagggatgggtgctgcagcaggccgtaactggactcaaacagagcagccaa
tatgaccaggcagagactctctgctctcaggttctgagtgtttctccagagcatcctgtg
gtgttcttgatgttaaggcaggttcagtgtgagcgcctcatgttgtctaaagctggtaac
tgtgttcctcctgcggtgctggatcagctcagtgctgtggtcatggccaaccacacatct
gtgtccgcctggcattggttggcagaagtgtaccgctctcagggtctgctggctcaggcc
tctgtggcatatagacagagtcttcagctggcctctcagctcggtgaccacttcggcaag
atgagcagcctgctccgactagccctgctagcacttatgccatgtttggctggtgtttgt
gtccctgagtggaaggatctggttttggaggccagcgctgaagtcttaaagatgggcagc
tcaccagtagctctgctcttccaagccttactgcagttctctttaaagatgggtgccagg
gaaacccgtcgcctgttggagaagattgtttattcttccgcctcagggaactctgaaaca
atagtgtcagtggcacgttggtacctcctgcgccacctgcacgccaaagatgacctggag
ctgatagataccctgttggtgaaagcgacagcagaaggagacagcagactggtggatttc
cacagacgcctttatccatccaactga
DBGET
integrated database retrieval system
