Carassius gibelio (silver crucian carp): 128014512
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Entry
128014512 CDS
T08819
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128014512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgib03019
]
128014512
Messenger RNA biogenesis [BR:
cgib03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128014512
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128014512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
128014512
NCBI-ProteinID:
XP_052454091
LinkDB
All DBs
Position
B25:11611933..11633005
Genome browser
AA seq
2382 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNVDLRGFAAQFVKQKLPDLLRSYVDADLGGSQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASLEECRNIIMQYGMREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVCGIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHAVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAISS
LSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPVISPLSSQLQGS
LSTSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNVKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQTP
KPPQPGQTCTLVTTATTTTTAPKTTTITRPTAVGPKKDVPPSINTTNIDTLLVATDQTER
IVEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPEFVKMVLSETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKETKPPE
EMLPIVTTVDSVPFTATPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHINININI
PLLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDL
EQHVHAIPPALAMNPQTQAMRSLLEAIVMARNSRDGIAALGLLQKAVEGLLDATSGADPD
LLLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVDAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSGSHITEADLFHTIETLMRTNAHSR
ANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
PTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVGMLTMVLGIVVGVL
IQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGF
VYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKG
TLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDM
LSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQL
INALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQL
RYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPA
FKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7149 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcaccagacacagtttctgatccaggagtgcgtgtct
cttattacaaaaccaaattttatttcaacgctttgttacgccattgacaatcctctgcac
tatcaaaagagtttgaaaccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtgatttttggccttgctctgctgaactccagtaacgtagac
ctccgagggtttgctgctcaatttgtgaagcagaagctccctgacctcctccgctcatac
gtggacgcagacctcggagggagtcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcggtcagaagggctccagcggagtcggtcaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctggagaattaaacaagaccatgatggagagttcacttgccgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgaagagtgcaggaacataatcatgcagtat
gggatgcgagaggtgacagccagtcaggtggccagagtgctgggcatgatggcccgcact
cactctgggctgtccgatggcatcggcctgcagtccatctcaaatccagttggtggtggg
atctggagtgatgggaaggacaagagtgacggctctcaggcccacacctggaatgttgaa
gttctaattgatgtggtcaaagaagtgaaccccaatctgaatttcaaggaggtgacctat
gagctggatcaccctggcttcctgatccgggacagtaaggggcttcagatagtggtctgt
gggatccagaggggtctgggattggaggtgttcccagtggacctcatctacagaccatgg
aagcatgcagaaggacagctgtcattcattcaacactcactgatgagtcctgaagtcttc
tgctttgctgattacccctgtcatgctgttgccattgacatcctgaaggccccacctgag
gatgacaaccgagaaatagccacatggaagagcttggacctagtggagagcctcttgcgc
ctctctgaagttgggcattatgaacaggtgaagcagctcttcagcttccccatcaagcac
tgcccggacatgctagtgctggcgctgctacagatcagtacatcctggcacaccctgcgt
catgagctcatctccaccctcatgcccatcttcctgggcaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccatccatccgccagctgatcatg
cactctatggctgagtggtacatgagaggagagcagtacgaccaggccaagctatcccgc
atcctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccgttt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaattcgagagcacggggaacctttcatccaggcgtgtgtcacattc
ctgaagagacgttgtccctctatcttgggtggtttggctccagagaaagaccagccgaaa
agtgctcaacttcctcctgaaactctggctaccatgcttgcatgtctgcagtcttgtgct
gggagtgtgtctcaagagctgtcagagacaatcttgaccatggtggccaactgtagcaat
gtgatgaacaaggcccggcagccgccaccaggagtcttgccaaagggacgagctcccagc
accagcagcttagatgctatttcacctgtgcagatggaccctctctctgcgattagctct
ctgagtctaggtgtctcgtccacctctcacaccccgagcatgcaaggattccccagcctg
cagggctctgccttcagtaacccccagtccccagccaaagccttctcgaacctgcccaac
ccgaaccccagcacagctttcccagttatcagccccctctcttctcagctccaaggttct
ctgagcacaagcttgactgggattggctcaggtttgggcatgcccgctgtcagcagtgac
cccttcggcaccaggaagatgagcacaccggggctgaacccacccaccttccagcagact
gatctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagatagacgatgag
gcaaacagctacttccagcgcatctacaaccatcctccacaccccacaatgtccgtagat
gaggtgctggaaatgctgcagagatttaaggactcgaacgtcaagcgggaacgggaagtt
tttaactgcatgctgaggaatctgtttgaggagtacagattcttccctcagtatccggac
aaagagctacacatcaccgcttgtctctttggggggatcattgagaaaggcctggtcacg
tacatggcgctgggcttggccttacgatatgtcctggaagccttacgcaaacctttcgga
tcaaagatgtattactttgggatcgctgcactagatcgatttaaaaatagactgaaggac
tatccccagtactgtcagcacttggcatcaatagcccatttcctgcagtttccgcaccat
ttacaagagtatattgagtatggccagcagtccagagaccctcctgtgaagatgcaaggc
tccattaccaccccaggtagcctagctttagcccaggctcaagctcagtctcagaccccc
aaaccccctcaacctggccagacctgcaccttagtgaccacagccaccacaacaaccact
gctcccaaaaccaccaccatcacgagacctacagctgttggaccgaagaaggacgtccca
ccttcgatcaacaccacaaacattgacaccttgttggtggccacagaccaaactgaaagg
atcgttgagcccccagagaatgttcaggagaagattgcattcatcttcaacaacttgtcc
caatcaaacatgtcccaaaaggtggaggagctgaaagagactgtgaaagaagaattcatg
ccctgggtttctcagtacctggttatgaaacgtgtcagcattgagcccaacttccacagc
ctgtattcaaacttcctggacacactgaaaaacccagagtttgtcaagatggttctcagt
gagacttacagaaacatcaaggtcctccttacctctgataaggcagctgctaacttctca
gatcgatccctgctgaagaatttgggtcactggcttggaatgatcaccttagctaaaaac
aaacccatactgtacacagacctggagctgaaatctctcttgctggaggcttatgtgaaa
ggccaacaggagttactgtatgtcgtcccctttgtggccaaagtcttggaatcaagtcta
cggagtgtgatcttcagaccgcagaacccttggaccatgggtatcatgaatgtactggct
gagctccaccaggaacatgacttaaagcttaacctcaagttcgagattgaggtgctctgc
aaaaatctgtctttggacatcagtgagctgaaaccaggaaacctactgagagacaaagag
aagctgaagaacttggaggagcagctctctgcaccaaagaaagagaccaagcctcctgaa
gagatgctgcctatagttacaacagtagattctgttccatttacagccactccgtcaact
ccagccaccaccacgacctgtacggccacgggaccacccacaccacagttcagctaccat
gacatcaatgtgtatgccttggctggcctggccccgcacatcaacatcaatattaacatc
ccattactacaggcccaccctcagctgaagcagtgtgtgagaccagcaattgagcgtgct
gtacaggaacttgttcacccagtggtggaccgatccatcaagatcgccatgaccacttgt
gagcagatagtcaggaaggacttcgcgctagactctgaggagtctcacatgcgtgtggcc
gcccaccacatgatgcgtaacctgactgccggcatggccatgatcacctgcagggagcct
ctgctcatgagcatcgccaccaacctgaagaacagctttgctgcagctcttagggctccc
acaccccagcagagagagatgatggaagaggcggctgctcgcatcgcacaggacaactgt
gagcttgcttgttgctttatccagaagacagccgtggagaaagctggaccagagatggac
aagaggctggcaactgaattcgagctgaggaagcacgctcgccaagaaggtcgacgctac
tgtgaccctatggtgctcacctatcaggctgagcgcatgccagagcagatcagactgaag
gtcggtggagtggatcctaaacagctggctgtttatgaagagtttgcccgtaatgtccca
ggtttcctacccagtaatgacctgtctcaaccaactggtttccttgcccagccaatgaag
caacaggcatggcccacagatgatgtggctcacatctatgataagtgcatttcagacctg
gagcagcacgtgcatgcaattccacctgccctggccatgaacccacagacccaggccatg
cgcagccttctggaggccattgtcatggctagaaactcccgtgatggcatagctgccctg
ggccttttgcagaaggctgtggagggtcttctggatgccaccagtggcgctgatcctgat
cttttgctgagctacagagagtgccacctgctggtgctgaaagccctacaggacggtcgt
gcctacggtccacagtggtgcaacaaacaaatcaccagatgcctgattgagtgcagagat
gaatacaagtacaacgttgatgctgtggagctcctcattagaaaccacctggtcaacatg
cagcagtatgacttacacctggctcagtccatggagaacgggctcaactacatggccgtg
gcattcgccatgcagctggtgaagctcctactggttgatgagcgtagcgggagtcacatc
actgaagcggatctcttccacaccattgagacgctgatgaggaccaacgcccactccaga
gctaatgctcctgaaggtttgccccagctgatggatgttgtccgctccaactatgaggcc
atgatcgatcgtcaccatggtgggccgaacttcatgatgcactctgggatttctcaagcc
tccgagtacgatgacccaccaggccttagagagaaggcagagtacctgctgagagaatgg
gtcaacctataccactcagcagctgcaggaagagacagcaccaaggccttctctgcattc
gttggccagatgcaccagcagggcatcctgaagactgatgacctgatcactcgcttcttc
cggctgtgcacagaaatgtgtgtggagatcagttatcgtgctcaagccgaacagcagcac
ccaaccaccagccctgccatcatcagagccaagtgctaccacaacctggatgcttttgtt
cggctcattgcgcttcttgtcaaacactccggagaggccaccaacacggtcaccaaaatc
aaccttctcaacaaggttggaatgcttacaatggttctaggcattgtggtgggtgtgttg
atccaggatcacgatgtgaggcagacggagttccagcagcttccgtaccacagaatcttc
atcatgctcctgctggagctaaacgcaccagagcatgtgctggagaccatcaacttccag
accctcactgccttctgcaataccttccacatcctgaggccaactaaagcacctggtttc
gtctatgcttggctggagctcatctcacaccgcatcttcattgccaggatgcttgcacat
accccacaacagaagggttggccaatgtatgcccagctgctgatagacttgttcaagtat
cttgcacccttcctaaggaatgttgaactcaacaaacctatgcaaattctctacaaggga
acacttcgtgtgctgcttgtcctgctacatgacttcccagaattcctgtgtgactaccat
tatggtttctgcgacgtcatcccgcccaactgcatccagctgaggaacctgatcctgagt
gccttcccccgcaatatgaggcttccagaccccttcacccctaatctgaaggtggatatg
ctgagtgagatcaacatcgctccccgcatcctcactaacttcaccggtgtgatgccgtcc
cagtttaagaaggatcttgactcctacctcaagacccgttctcctgtcaccttcctttct
gagctgcgcagcaacctgcaggtgtccaacgagccaggcaaccgttacaacattcagctg
atcaatgctctggtgctatacgttggaacccaggccattgcccacatccacaacaagggt
agcactccctccatgagcaccatcactcactcggctcacatggacatcttccagaacctc
gcagtcgatctagacactgagggccgctatctgttcctgaatgcgatagccaatcagctg
cgttatccaaacagccacacgcactactttagctgtaccatgctgtatttgtttgccgag
gccaatgctgaagccattcaagagcagatcaccagggtcctgctggagaggctgattgtg
aacaggccgcacccgtggggtctgctcatcaccttcattgagctgatcaagaaccctgcc
tttaagttctggagccatgattttgtgcactgtgccccagagatcgagaagttgttccag
tcggtggctcagtgctgcatggggcagaagcaagcccagcaggtgatggagggaacgggt
gccagttag
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integrated database retrieval system
