Carassius gibelio (silver crucian carp): 128022168
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Entry
128022168 CDS
T08819
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04518
Integrin signaling
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128022168
04518 Integrin signaling
128022168
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128022168
09142 Cell motility
04820 Cytoskeleton in muscle cells
128022168
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgib04147
]
128022168
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
128022168
Exosome [BR:
cgib04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128022168
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128022168
Hyaluronan
Extracellular matrix or blood plasma proteins
128022168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Sde182_NH-like
Motif
Other DBs
NCBI-GeneID:
128022168
NCBI-ProteinID:
XP_052465425
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All DBs
Position
A11:6744630..6767940
Genome browser
AA seq
1015 aa
AA seq
DB search
MRMMVLSILLLLFVGVHIQGQTLDIHETCNYTINCPIHLYFVIDTSETIALQENPPGSLV
NSVKNFVIEFAEKLKSVNQGLVHMSWSIGGLHFSQKQVFFSQITSADVFIENLRKIVYLG
KGTHIDCAITNMTQQLLNTPSEPKAKRFAVVITDGHVTANPCGGIKVAAERARDEFIKIF
AVASSQNLEEAGLREIANSPAGVYRNKYMAVDLSGGRPVIVKSTIDRIYDAMLHLAYQEC
YSVKCLETKGPVGPPGHRGQKGAKGDNGDAGLKGQRGRPGDPGIEGPIGHPGTKGELGLK
GEKGDIGAQGRKGVAGTPGRNGTDGQKGKIGRVGAPGCKGDPGDKGPDGYPGAAGEPGYP
GSPGEKGDPGRPGRPGQPGTVGDPGSKGERGSPGSPGEPGLKGSAGIAGGPGPKGDPGRR
GDFGLKGSTGPNGGKGEKGEPGSEGTRGLAGEPGNQGSKGENGLPGPRGSPGAPGESGRI
GSQGDPGDAGPRGEPGPPGPQGDPGRPGFSYPGPRGATGDKGDKGSPGPRGSRGDCGPKG
EPGSKGTSGEPGEPGPPGEPGRRGIKGGPGRDGGPGPSGDPGLSECDVMSYIRETCGCCD
CEKRCGALDIVFVIDSSESVGMTNFTLEKNFVINTINRLGSMAKDPSSETGTRVGVVQYS
HNGTFQAIRLNDSRIDSMSAFKQAVKNLEWIAGGTWTPSALKFAYDNLIRDSRRSKANVT
VVVITDGRYDPRDDDSLLGYLCTTNNIDVSAIGIGDMFDQPEENESLKSITCNKKGRVMG
MRRFADLVAEDFIDKIETVLCPDPVVVCPHLPCQMEPAVASCIQRPVDIIFMLDGSERLG
QENFHHAHDFVLKVAKRLTLAQGENDDHNARVALLQYSVENQHLLGFRLTNNISIITSGL
ANMRYLDSSSNVGSGIIYAVNNIVTSRGSRLARRNAELLFIFITDGFTDDTNLEEGISSM
RRVEGVPTVITIGKDDNKKILEKLSMGDQTAVFRDKDFASVNTASFFNRFIQWIC
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgatggtactatcgatcctcctcctgttgtttgtgggtgttcacatacagggc
cagactttggacatccatgaaacctgcaactacacaatcaattgcccaatccatttgtac
tttgtcatcgacacatctgagaccatagctctacaggagaacccacctggcagcttggtc
aatagcgtcaaaaactttgtcattgaatttgctgagaaactaaaaagcgttaaccaaggt
ttagttcacatgagctggtctataggaggccttcacttctcccagaagcaggtgttcttc
agccaaatcaccagtgcagatgtgttcattgagaatctaaggaaaatcgtgtacttggga
aagggcactcacattgactgcgccatcaccaacatgacccaacaactgctcaacacaccg
tccgaacccaaagccaagcgctttgcggtggtcatcaccgatggtcatgtgacagctaac
ccatgtggtgggatcaaagttgcggcagaacgagcacgtgatgaattcattaagatcttc
gctgtcgcatcgtcccagaacctagaggaggcaggactgagggagattgctaattcacct
gctggagtttatcgtaacaaatacatggctgttgatctatcgggagggaggccagtcata
gtgaaatcaacaatcgatcgcatttatgatgcaatgcttcatctggcttatcaagagtgc
tactctgtgaaatgtttggagactaaaggacctgtaggtccaccaggacacaggggacag
aaaggagctaaaggagataatggcgatgccggtcttaaaggtcaacggggacgtcctgga
gatccaggtattgagggacccattggacatcctggaacaaaaggagaactcggtctcaaa
ggtgaaaagggagatattggagcacaagggagaaagggtgttgctgggacacctggcaga
aatggaacagatgggcagaagggaaaaattggcagggttggcgctcctggctgcaaaggt
gaccctggtgacaagggtcctgatggctatcctggagctgctggagaacctggttatcca
gggagtccgggagaaaagggtgatccaggtcgtccaggaagaccaggacaacccgggaca
gttggagatcctggatccaaaggagagagaggaagtcccggatcacctggagagcctggc
ctgaaaggatctgctgggatagctggaggacctggacctaaaggcgaccctggaagacga
ggagactttggacttaaaggcagcactgggccaaatgggggaaaaggagaaaagggtgaa
ccaggttctgagggaacaaggggtcttgcaggcgagcctggcaaccaaggttccaagggt
gaaaacggacttccaggaccaagaggctcaccaggagctcctggagaatcaggcagaatt
ggttctcaaggtgacccaggtgatgctggccctagaggtgaacctggccctccaggacca
cagggtgatcctggcagacctggattcagctatcctggaccaaggggagctacgggtgac
aagggtgataaaggttcacctggacccaggggaagtagaggagactgcggaccaaagggc
gaaccgggttcaaagggaacttctggagagccgggagagcccgggcccccaggagaacct
ggaagaaggggcattaaaggaggtccaggaagagatggtggccctggaccaagcggagac
cctggccttagtgaatgtgatgtcatgagctacatcagagagacgtgtggatgctgtgat
tgtgaaaagagatgcggtgccctggatattgtgtttgtgattgacagctctgaaagtgtg
ggcatgaccaacttcaccctggagaagaactttgtgatcaacaccatcaacaggctgggc
tcaatggcaaaagatcccagttctgaaacaggaactcgagttggtgttgtccagtacagt
cacaatggaacattccaggctattcgcctcaacgactccaggatcgactccatgtccgcc
ttcaaacaagccgtgaagaacctcgagtggatcgctggaggaacctggacgccttcagcc
ctgaagtttgcctacgataacttgattcgcgatagccgtcgttctaaggctaatgtgaca
gtggttgtgatcacagacggccggtatgacccccgtgatgatgactcactgctcggttac
ctctgcacaaccaataacattgatgtgagtgccatcggtattggtgacatgtttgaccag
ccggaggagaatgaaagcctgaagtccatcacttgcaacaaaaaaggaagagtcatggga
atgaggcgtttcgctgatctggttgcagaggatttcattgataagattgagactgtactc
tgcccagatccagtggttgtttgcccacatcttccatgtcaaatggagccagctgtagcc
agctgcatccagcgccctgttgatatcatcttcatgctggatggctcggagcgcttgggt
caggagaatttccaccatgcacatgatttcgtgttgaaagttgctaagcgcttgaccctc
gcccagggagaaaatgatgaccataatgccagggtggctcttctgcagtatagtgttgaa
aaccaacatctgttgggcttcagacttaccaacaatatcagcatcatcacttctggcctt
gccaacatgaggtacctggattcttcttccaatgtgggaagtggtattatctacgccgtc
aacaacattgtcacaagtagaggctctcgattggctagacgaaatgctgagctgttgttc
atcttcataaccgatgggttcaccgacgacacgaacctggaggaaggcattagctcaatg
cgcagagtagagggcgttcccactgtgattaccataggcaaagatgataacaagaagatc
ctagaaaagctttctatgggagaccagacggccgttttcagggataaggattttgccagt
gtgaacacagccagcttttttaaccgtttcattcagtggatctgctga
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