Carassius gibelio (silver crucian carp): 128022815
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Entry
128022815 CDS
T08819
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Pathway
cgib04510
Focal adhesion
cgib04512
ECM-receptor interaction
cgib04518
Integrin signaling
cgib04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128022815
04518 Integrin signaling
128022815
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128022815
09142 Cell motility
04820 Cytoskeleton in muscle cells
128022815
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgib04147
]
128022815
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
128022815
Exosome [BR:
cgib04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128022815
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128022815
Hyaluronan
Extracellular matrix or blood plasma proteins
128022815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_CoxE
VWA_3
IgGFc_binding
Motif
Other DBs
NCBI-GeneID:
128022815
NCBI-ProteinID:
XP_052466560
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All DBs
Position
A11:6695632..6727668
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AA seq
1006 aa
AA seq
DB search
MAFNGYIVTMLCALWAAIFALDEKKLSFKECPVDLFFVLDTSESVALRSKPPDFYIDQIK
RFTNRFIDQLKDISQPCSRFLTWNSGALHYSDDTELVMGLVDVKTHRSELKAAIDRISYI
GKGTYTDCAIKEGIAELVKAGSHYHQNKYIVVVTDGHPLTGYKEPCGGIQEATNEAHQHG
IKVFAVAISPDQEDTRLSIIATDKNYRQNFTAADPYRSLQSTTINTIIEMITNETTDVCC
SIDCHAPEGPPGLPGDPGHTGESGRPGMPGEKGDVGPPGNPGDPGPVGYQGMKGDQGIKG
EKGDRGHKGFKGEKGRHGIDGLDGRKGEPGFSGLPGCKGSPGPNGLQGDTGPKGDPGPYG
SKGERGDPGRDGPPGRPGNYGFPGTKGERGPRGANGDKGERGDDGSPGPDGPRGERGIPG
EKGEQGSRGNRGPRGDPGEPGPRGEQGREGSAGPNGEPGEPGRTGAPGYRGDEGPAGPEG
PKGSRGIKGSPGDRGLMGERGVDGPPGNGTEGCHGFQGYPGPRGDPGSPGGKGTPGPKGD
DGEPGDPGRDNDSPGPDGPRGPKGHRGLEGKEGPPGPPGPPGVDECEILDIIMKMCSCCE
CKCGPLDILFVVDSSESIGATNFAISKDFIVTLIDRLKIRQFGANESRVGVLQYSGAGAQ
ESVQLGDPNVTTLTDLKQAVKNFRWLAEATYTGEALSVMLNRLIRRVATDRTVVIVLTDG
RSNTERDRVPLDVLCGKGLKVGGIGVMDYAERRPNREQINQVACESDRTNSFSFILDNYG
VLLEDSFLQNMTKKICEDTKCPSYTCPISFNGDTDILIMMDSSASVGKENFEMTKDFTKM
LAERFLKAEGRYLVHVGVGQYSSNTNMEAEFSSDYNEVIAQIAEAKYQGAGTRVTNALTF
AIERFKGGGIRKKKLLLFSDGRSQGVDNNQIKNVVRQVTTAGIELYVLAIHNHLHEINLL
TLVSQGLPYNYTYVHKHLFKRADYHSLLTGVFYQSVSRKISLDXRG
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttaatggatacattgtgaccatgctgtgtgcactttgggcagcgatcttcgct
ctggatgaaaaaaaactgtctttcaaagagtgtcccgtggacttgttctttgtgttggac
acatctgaaagtgtggccctcagatccaaacctccagatttttacatcgaccagatcaag
agatttaccaaccggttcatcgatcagctgaaagacatatcacaaccatgtagtcgtttt
ttgacttggaactctggagcgctgcactacagtgacgacaccgagctggtgatggggtta
gttgacgtgaaaacacaccgttcggagctgaaggctgccatagatagaatcagttacatc
ggcaaaggaacgtacaccgactgtgccatcaaggagggtattgctgagctagtcaaagcg
ggctcccattatcatcagaataagtacattgtggtggtcacggatggtcatcctttgact
ggctacaaggagccatgtggtgggatccaggaggctaccaatgaggcacatcagcatggt
atcaaagtgttcgctgtggccatctcacctgaccaggaggacaccagactctctatcatt
gccacagacaaaaactacagacagaacttcaccgctgcagacccctaccgctccttgcaa
tcgaccactataaacaccatcattgagatgattacaaatgaaacaacggatgtgtgctgc
tccattgactgccacgcccctgaaggccctccaggactacctggtgacccaggacataca
ggagagtctggaagaccaggcatgccaggagagaaaggagatgttggacctccgggaaac
cccggtgatcccggtccagtcggttaccaaggaatgaagggcgaccaaggaataaaaggt
gaaaagggtgacagaggtcataaaggcttcaagggagaaaaaggtcgtcatggtattgat
ggcctcgatggacgtaagggtgagccaggattctcaggccttccaggctgcaaagggtca
ccagggccaaatggcttgcaaggagatacgggtcctaaaggagatcccgggccatatgga
tccaaaggagaaagaggagatcctggcagagacggtccaccaggaagacctgggaactat
gggtttccaggaacaaagggagaaaggggtcctagaggcgccaatggtgataaaggggag
agaggagatgacggatcaccaggaccagatggcccaagaggagaaagaggcatacctggt
gagaaaggtgaacaaggttcccgtggtaacagagggcccagaggcgaccctggtgaacct
ggaccccggggtgaacaaggacgtgagggatcagcagggccaaacggagagccgggcgag
ccaggaaggacaggggcaccaggttaccgtggcgatgagggtcctgctgggccagaggga
cctaaagggtccagaggaatcaaagggtccccaggagacagaggcctgatgggagagagg
ggtgtagatggaccaccaggaaatggaaccgagggttgccatggcttccagggttatcct
gggcccaggggagatccaggatcacctggtggaaaaggaacccctggacccaagggagat
gatggagagccaggtgaccccggaagagataatgacagtccgggaccagatgggcctaga
ggacccaaaggtcacagaggtttagaaggaaaagagggaccaccaggaccacctgggcct
ccaggagttgatgaatgtgaaattctggatatcatcatgaagatgtgctcttgctgtgaa
tgcaaatgcggacccctggacattctcttcgttgtggacagctctgagagtattggagct
actaactttgccatctctaaagacttcattgtgacgttaatagacaggctcaagataaga
cagtttggtgccaatgagtctcgtgttggcgtgttgcagtacagtggtgcaggtgctcag
gagagcgtacagcttggtgaccccaacgttacgaccctgacggacctaaaacaagctgtg
aaaaacttccgctggctggctgaagccacatacactggagaagctttgagtgtcatgcta
aacaggttgattagaagggttgcgacggacaggactgtggtcattgtccttactgatgga
cgctccaacaccgaaagggatagagtgcccctggacgtgctgtgtggaaagggactgaag
gttggaggcattggagtgatggattatgcagaaaggaggcccaatagagagcagattaat
caggttgcatgtgaatctgatcgcacaaatagcttctcctttatcttagacaactatggt
gttcttttggaggacagtttcctgcaaaatatgactaagaaaatctgtgaagacacgaag
tgtcccagctatacttgtccaatttcatttaatggcgacactgatatcctcatcatgatg
gacagctcagccagcgtgggcaaagagaactttgagatgaccaaggacttcacaaaaatg
ctggctgagcgctttttgaaagcagaaggaagatacctggtccatgttggtgttggccag
tacagcagcaataccaacatggaggccgaatttagctcagattacaatgaggtgattgct
caaatcgcagaagccaagtaccagggtgcaggtactcgggtaacaaatgctttaaccttc
gcaattgagcgcttcaaaggtggtggaattaggaagaagaagctgctgttgttttcggat
ggtcgttcccaaggcgtagacaacaaccagattaaaaatgttgtgaggcaggtgaccact
gctggcattgagctgtatgtgttggccattcacaaccatctacatgagataaacctgctc
accttggtgagccaaggccttccctataactacacgtatgtccacaaacaccttttcaaa
agagccgactaccactcattgcttactggggtgttttaccaatctgtatcccgcaagatt
tccctggattagagggggtga
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