Colletes gigas: 122395108
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Entry
122395108 CDS
T07492
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cgig
Colletes gigas
Pathway
cgig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122395108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgig03019
]
122395108
Messenger RNA biogenesis [BR:
cgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122395108
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122395108
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
HTH_upst_double_PIN
Motif
Other DBs
NCBI-GeneID:
122395108
NCBI-ProteinID:
XP_043248374
LinkDB
All DBs
Position
Unknown
AA seq
2402 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRDSCQEISVLVQWKGLEADRHLLRSLLSCIDFSTG
EPPELSAKDYFQVQLLKQECTNLLSKPSFISNLCFAIDHPLHQQKTLNPSPKFFLRLKKV
LGLTLVQEVAFAIGLLHSENTEICTLALEHVQKQLPELIKNYINSETSNKHHEEGLHDSL
PEVLHLILSQAFHSANQFGLSSEAKEKFLKNLRRDFPRELVPVVLAPLLYPDNGETPQAK
IELNMAVNQMDGNSLVELIMELGYGFTSSVEECRSALAGLGAREISPACAARVLAHMARS
CNNLDDAGGLQSFWGNSGAAQDANKEKSADNAAPGTWNVEIFIQALKEIQSTLSWNDVII
KLDHAEFVIKDRQGLSLLITGLRMGLQHQGYPPDMFPVELFYRHWDNVEGQFSIVQQILK
CPDIFCFADYPYHSVTVDVLKAAPESDSKEAQTWRSLNVVELLLHMAERGLYGPVQEIFK
WPIQHCPDVLVLALLQINAPITILRQELLSTLMPIFLGNHPNSAVILHHAWHGNTVKIKS
IIMHAMAEWYIRGDHDQTRLSRILDVAQDLKALTHLLTAQSYPFVIDLACLASRREYLKL
EKWLTDKIREQGEVFVTACVKFLQRRCPQVMGPGIKEDLTVPKASQLPQETLTTMLACLQ
VCAGSVSQECSEAIMGMVQNCSLMLSKTTMSRPPPPGVLRHRGLEPFNPATLSGQLFSSK
QVDPLGNLSSSLASMGLGSSLGPPSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPSSTTIGGLGRLGPPTGIEKARIPETSNLFPDMTQNVSKEIE
DEANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGSKREREVFNCMLRNLFEEYRFFPQY
PDKELQITAQLFGGIIEKGLVNSYMTLGLALRFVLDALRKPEGSKMYYFGITALDRFKSR
LKDYQTYCEHVRAIQHFSEFPPHLIEYIEYGLQGQEPPTRPQGPVLPKTLAAMLAPVTTP
YKTITTTTITTSTTQTKSSTTPTTSLSARPSIANATNIDTLLVATDKEEKITTPPEALQD
KTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCLK
LPEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNRPILQIDIDL
KSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKL
NLKFEIEVLCKNLSIDVGELKPALYLKDPEKLRNLEYQLSHPNKKAEAKNNQQQTQGPIE
ELVGPTTTGTIVSQAPPANTTPSLPTGPPEPRFNYMDISVTSIANISQHITINNQLPLFQ
THPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHM
VRNLTAGMAMITCRDQVLASISTNLKQAFLSAMMGTTPQQKELAEQAANVVATDNMELAC
AFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDSLAKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQALLMPKPVTEPAVTAFAANPAVAVATAQQVAAYA
AAVSNDEVGAMLEKLAAEVEVLLAAMGPAVPPPQHGALHSLLESIILTRRSRDAGAAMTL
LKKAVEGLLDGPTISSGVIDSEIILRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLTEC
REEFRYNFEAVDYLIRSHLISLPQYDLALAQAIDSGNAMATAFAMQLVQLYLIDERQTTH
VTESDLFHTIEILARMAHHRAPPEGILLFRLTSLIDSLRANHDPGVLADRAPAGPTAHIH
SGILQVRARDFDDPPGLMEKTEYLLREWVTMHHNPTHARDPTKAFGMFVHQMNIHGILKT
DDLITRFFKLSTQMCVDLCYRALAETNVAPSVVRAKCFHSLDAFVRLVALLVKHSGDSTN
THTKINLLNKVLGIVAGVLLQDHEIRGTDFQQLPYHRIFIMLFLELCAPEPVLEAVNYQV
LTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLFKYL
APYLRNAELAKPVTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSA
FPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASMIQPLSFKKELDSYLKARAPVTFLS
ELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAIAFIRSKGHTPNMSTIAHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPTYKFWTHEFVHCAPEIEKLFESVARSCMVQKQVQPTPEPEI
PE
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaattta
aataagaaaaattttcgggacagctgccaagaaatatcagttctggtgcagtggaagggt
ctggaggcagacagacacttgctgcgctctttgctctcgtgcatcgatttttcaacaggc
gagccaccagaattaagtgcgaaagattattttcaagtgcaacttctaaagcaagagtgt
actaatcttcttagcaaaccctcttttatttctaatctgtgttttgctatagaccaccca
cttcatcaacaaaagactttgaatccatcgccaaagttttttttacgtttgaaaaaggta
cttggtttaactttggtacaagaagttgcattcgcaattggattgctgcattctgagaat
actgaaatttgtacattagctctagagcacgtacaaaagcagttacctgaattgataaaa
aattatattaactctgagacgagcaataaacatcacgaggaaggtttgcacgattcactg
cctgaagttctacatcttatattatcacaggcttttcactcagccaatcaatttggcctt
tcatcggaagcaaaagaaaaatttctcaagaatttaaggcgcgattttccccgtgagctg
gtaccagtggtgctagcaccactcttgtatccagacaacggggaaactccgcaagccaaa
attgaattaaacatggctgttaatcaaatggatgggaattctctagtagaattgattatg
gaattaggatatggatttactagcagtgttgaagaatgtcgatcagccttagctggccta
ggtgctcgagaaatatctccagcatgtgctgcaagagttttagctcacatggcacgtagc
tgcaataaccttgacgatgctggaggtttacaatcattttggggtaattcaggagctgca
caagatgcaaataaagaaaagtctgctgacaatgctgctcctggtacatggaatgttgaa
atctttattcaagctttaaaagaaattcaatctacactgtcttggaatgatgtgataatt
aaattggaccatgcagagtttgttattaaagataggcagggattgagtttacttatcaca
ggcttgaggatgggattacaacatcaaggatatccaccagatatgtttcctgtagaactt
ttttatcgtcattgggacaatgtagaaggacaattctctatagtacaacaaattctgaag
tgtcccgatatattttgcttcgctgattatccatatcactcagtgacagttgatgtgtta
aaagcggcaccggaaagtgacagtaaggaagcacaaacttggagatccttaaatgtagtt
gagttgctcctacacatggcagaaagaggactgtacggaccagttcaagaaatattcaaa
tggcccattcagcactgtcctgatgtccttgtattggcattattacagattaatgctcct
atcactatattgagacaagaattacttagtacattaatgcctatttttcttggaaatcat
ccaaactctgctgtcattttgcatcacgcatggcatggcaatactgttaaaataaaatct
attatcatgcatgctatggcagagtggtacatacgcggagatcacgaccaaacaagattg
tctcgtattcttgatgttgctcaagaccttaaagcattgactcatttgctcactgctcag
tcatatccatttgttattgacttagcttgtttagcttcaagaagagaatatttaaaatta
gaaaagtggttaacagataaaatcagagaacaaggagaggtttttgttactgcttgtgta
aaatttttacaacggcggtgtcctcaagtaatgggacctggaataaaagaagatcttaca
gttccaaaagcaagtcaacttccacaagaaacattaacaactatgcttgcttgcttacaa
gtgtgcgccgggagtgtttctcaagaatgttccgaggcaataatgggtatggtacaaaac
tgcagtttaatgttgagtaaaactacaatgagtaggcccccaccaccaggagttttaaga
catcggggattagagccatttaatccagctacattaagcggacagctattttcttctaaa
caagtggatccacttgggaacttgagttcaagtcttgcatctatgggtctaggatccagt
cttggaccaccaagcagttccgcgttcaatttacccggtgctcttggacctttggtatca
gcgcctggttcaccttcgcgccttatggggccttctccaagtccatttccaatgttgcca
ttatcttctcagttgcattcagggccagttggtacacaagggccatctgttctccctagt
agtacaacgattggaggattaggtcgtcttggtccaccaacgggcattgagaaagcaaga
atacccgaaacttcaaatttatttcctgatatgacacaaaatgtttccaaagaaattgag
gatgaagcgaatagctatttccaacgtatatacaatcatccaccacatcctactttatca
attgacgaagttcttgatatgttaaaaaaattccaagattctggtagtaaaagagaaaga
gaggtatttaattgcatgttacggaatttattcgaggaatatcgttttttccctcaatat
cccgataaagaattgcaaatcacggcacagttatttggtggaatcattgaaaaaggctta
gttaatagctacatgacacttggactggctttgagatttgttttggatgctcttaggaaa
ccagaaggcagcaagatgtattattttggcataacagctttggatcgtttcaagagtcgt
ttaaaagactaccaaacatattgtgagcacgtcagggcaattcagcatttcagtgagttc
ccacctcatttaattgagtacatagaatatggattacaggggcaggagcctcctacaaga
cctcaaggtccagttctcccaaaaactttagcagctatgttagcacctgttacaacacca
tataaaactatcacaacaacaactataacgacgagtaccactcaaacaaaatcgtccacg
acacccactacatctctctcagctagaccttcaattgccaatgcaacaaatattgataca
ttattagtagcaacagataaagaggaaaagattactacaccaccagaggctttacaagat
aaaacagcattcattttcaacaatcttagccagcttaatttacagcaaaaatgtgatgaa
attcgggaaattgtcactgaagagtattggccttggatggctcagtatctagtaatgaaa
cgtgcaagcatagaactaaacttccatgccttgtattcaaattttttggactgtttaaag
ttacctgaagtaaataaaatggttactagggaaacatttagaaacataaaggttttgtta
cgaagtgacaaaggaatagcgaatttttctgatcgatcgcttctaaaaaatttaggtcac
tggttaggaatgttaactttaggccgaaataggccaattttacaaattgatatagatcta
aaaagtttgcttgttgaagcatatcataaaggtcaacaagaacttctttatgtagttccc
tttgttgctaaagtgcttgaaagttgcgcaaaaagtcgggtgtttcgtccacctaatcct
tggacaatggcaataatgaatgtattggcagaacttcatcaagaacctgatttaaaatta
aatttaaaatttgaaattgaagtactttgcaagaatttaagcatcgatgttggtgaattg
aagcccgcgctttatttgaaggatccagaaaaattacggaatttagaatatcaattatca
catcctaataagaaagctgaagcaaagaacaatcagcaacaaacacaaggtcctattgaa
gaattagttggtcctactacaactggaacaattgtttcacaagcacctcctgcaaataca
acgccatctttgcctactggtccaccagaaccgcgcttcaactatatggatatatccgta
acaagcattgctaacatttctcagcatatcaccattaataatcagcttccattgttccaa
actcacccgcatttaaagcaattcgttcgcccagctgttgaaagggcaattcaagaatgg
atacatcctgttgttgaccgttcgattaaaatagctctaactactagtgagcaaattgta
agaaaagattttgcattagatccagaggaagttcgaatgagaacagcggcaagacacatg
gttcgtaacttaactgctggaatggctatgatcacttgccgtgatcaggttctggcgtca
attagtacaaatttaaaacaagcctttctatccgcaatgatgggcacaactccgcagcaa
aaagaactcgcggaacaagcagctaatgtagtagccactgacaacatggagcttgcttgt
gcatttgtacagaagactgctatcgaaaaggctattccagaaatggataagcgtttactg
aatgagattgaattacggaaaattgcacgtcaggaagggagaagatactgtgattcttta
gctaaatatcaagcagagagaatgcctgagcaaattagattaaaagtaggaggtgtgaca
cctcaacaaatggctgtttatgaagaatttgcaagaaatattccaggatttttgccactt
tcagaacgcgatacgcaagctctgttaatgccaaaacccgtcacagaacctgctgtaact
gcatttgccgctaatccggcagttgcggtagcaactgcacaacaggtagctgcatacgcg
gcagcagtaagtaacgatgaagttggagctatgttagaaaagcttgcagccgaagttgaa
gtattacttgctgcgatgggcccagctgtacctcctccgcaacatggcgcccttcatagt
ttgctagaatctattatccttacacgaagatcaagagatgcaggcgctgctatgacatta
cttaagaaagctgtagaaggactattagatggtcctacaatttcaagcggtgtgatagat
tctgaaattatactgcgatatagagaacttcatttacgtattttgaagtgtcttcaagat
ccacgtgcttatggtatgcagtggacaaacaaacacgtcactcgttgtttaacagaatgt
agagaagaatttcgatacaattttgaggctgtcgattatcttataagatctcatttaatt
agtcttccacaatatgacttagctttggctcaagctatagattctggaaatgctatggca
acagcatttgctatgcagttggtgcagctttatttaattgacgaaagacaaactacacac
gtcactgaatcggatttgttccacactattgagatattagctagaatggcgcatcataga
gcaccgcccgaagggattttattgttcagattaacaagtttgatagattcgttgcgcgcc
aatcatgatccaggtgtattagcggacagagcacccgctggaccgacggcgcatatccac
tctggaattctgcaggtgagagcgcgtgatttcgatgatccacccggattgatggaaaaa
acggagtatttattacgcgaatgggttacaatgcatcataacccgacacacgcgcgtgat
cctacaaaagctttcggaatgtttgtccatcaaatgaacattcatggaattctaaaaacc
gatgatctcataacaagattctttaaattgagcactcaaatgtgtgttgatctatgttat
cgtgctttggccgaaacaaatgtagctccatcggttgttcgtgcaaagtgtttccattca
ttggatgcttttgtccgtttggtcgcgcttttagtgaaacattctggggacagtacaaat
actcatacaaagattaatttgctaaacaaggttctgggaattgtagccggtgtactactg
caggatcatgagatacgtggaacagatttccagcaactaccttatcacagaatcttcatt
atgctctttttggagctctgtgctcccgagcctgtattagaagcagtgaattatcaagta
ttgactgctttctgtcatacattgcatatacttagaccagccaaagcttccgggttttgt
tacgcttggttagaactagtttcacatagagttttcattggacgtatgctcgcgattacg
ccgcaacagaaatgttggggaatgtacgcgcagcttttaattgacctgttcaaatacctt
gccccttatcttcgaaatgccgaacttgcaaagcctgttactttattgtataaaggaaca
cttagagtattactggtattattacacgattttccggaattcctttgtgattatcattat
ggattttgcgatgtaattccacccaattgtatacagatgaggaatcttattttaagtgcg
tttccaagaaatatgcgcttgccagatccatttacaccaaacctgaaagttgatatgtta
caagaaatagcacacgctccgcgagtgttgaccaattttgcgtcgatgatacaacctctc
agtttcaaaaaggaacttgattcgtatctaaaagcacgtgctccagtcacttttctttcc
gaacttcgcagtaatttacaagtatcacaagaagctggcgtacgctataatattcaatta
atgaatgctctagtactttatgttggaacacaagctatagcttttattcgtagcaaagga
cacacaccgaatatgtctactatcgcacattctgcacatatggatatattccagaattta
gcagtcgatcttgatacagaagggcgttatttattcttaaatgcaattgcgaatcaactt
cgatatcccaatagtcatacacattatttcagttgcacacttttgtacttgtttgctgaa
gctaataccgaagcgatacaagaacaaatcacgagagttcttcttgaaagacttatcgtg
aacagacctcatccatggggtcttcttattaccttcattgaactgattaaaaatccaacc
tacaaattctggacgcacgagtttgttcactgtgcaccagaaattgaaaaattattcgag
tcagtagctcgatcgtgtatggttcaaaaacaagtgcagcccactccggaaccagaaatc
ccagagtga
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