KEGG   Cottoperca gobio: 115020907
Entry
115020907         CDS       T07513                                 
Symbol
lig4
Name
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
cgob  Cottoperca gobio
Pathway
cgob03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cgob00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    115020907 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cgob03400]
    115020907 (lig4)
Enzymes [BR:cgob01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     115020907 (lig4)
DNA repair and recombination proteins [BR:cgob03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     115020907 (lig4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV BRCT BRCT_2 DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme GatB_Yqey
Other DBs
NCBI-GeneID: 115020907
NCBI-ProteinID: XP_029306833
Ensembl: ENSCGOG00000000420
UniProt: A0A6J2R7T5
LinkDB
Position
2:4418197..4445587
AA seq 929 aa
MSKKEMVNVRRSDLSGGGHEDFTMEGTSKSEPSVAAQVPFLHLCTTLEKIQKSKPRPDKC
KILGDFIESWRKFHSALHKENSKATDSFYSAMRLIVPSFERERIAYGIKESMLAKLYIDV
LGLPKNGPEANKLLNYRAPTTSQGEAGDFACMAYFVLKKRCTSQGNLSIKEVNDFLDSVA
TNNGSKQKDLVKKSLLHLITQSSALEQKWLIRMILKDMKLGISRESVLQVFHPDASELYN
VNTDLNKVCQQLHNPSMCLSDVSVGLFSAFKPMLAAVANIRHVEKQMGNSPFYIQTKLDG
ERMQLHKDGDVYKYFSRNAFEYTKQFGESPLAGSLTPYIHNIFKSHVVNCILDGEMMAYN
PTTETFMQKGSKFDIKKLMDDSELQTCFCVFDVLLVNDQKLGKETLKKRHETLQTVFTPV
QGRIHLVPKVDARTMQEVVNALNDAIDGREEGIMVKDPSSIYKPDKRGEGWLKIKPEYVD
GLMDELDVIIVGGYWGKGRRGGMVSHFLCAVAEAPKPGEKPSVFHTICRIGSGYTMKELY
DLGLKLAKHWKVYRKNDPPASILCGTEKPEVYIEPCNSVILQVRAAEVVGSDMYKTNCTL
RFPRIEKIRDDKEWHQCMTLAELDQLRGKASGKLASRHLHIDGNEAQKKKRKLTIKPRKV
VGIIDHFKPQDLSGVTKETDMFEDVEFCILNGTEEQPKAELEKGVARCGGIVVQNPGRDT
YCVIAGMENMRVKNLVSSDQHDVVWADWLLECLGQKEVVPWQPRHMIHMSPSTKEHFAKE
YDSYGDSYFVDTDEQQLKEVFGRISNEDASVAVNICQVEQRYGWEDLPSSMFRPFEVYMD
SYTDIGDPETATPASSLDIRALEFCYHGGTVVQKLEEGVSHVIITEETRLLHLRTQRRCF
RKKFKIVRESWVTDSIKAGHVMNDTDYLV
NT seq 2790 nt   +upstreamnt  +downstreamnt
atgtcaaaaaaagaaatggttaatgtgagaagatccgatttatccggagggggacatgaa
gatttcaccatggagggaacttccaaaagtgagccttctgttgctgctcaggttcctttc
cttcatctttgtaccactttagagaaaatccaaaagtctaaaccccgtccagataaatgc
aagatccttggggatttcattgagtcatggaggaagtttcattctgccctccacaaagag
aactccaaagcaacagactctttctactcagctatgcgcctcatagtcccctccttcgaa
agagagcgtatagcttatggcatcaaagaaagcatgttagccaaactgtatatcgacgta
ttaggcctcccaaagaatggcccagaagccaataaacttttaaactaccgtgctccgact
acatcccaaggagaagctggagactttgcatgcatggcgtactttgtgctgaagaaaagg
tgcaccagccaaggaaatctcagcatcaaagaagtcaatgactttctggactctgtagct
accaacaacggtagcaaacagaaggatcttgtgaagaagagtctgctgcatctcatcacc
cagagctcggctctcgagcaaaagtggctcatcagaatgatcctgaaagacatgaagctc
ggaatcagcagagaaagtgttctccaagtcttccacccagatgctagtgagctctataat
gtcaatacggacttaaacaaggtctgccagcagctccacaacccctccatgtgtctaagc
gatgtctctgtcggactcttctctgctttcaagcctatgttggcagctgtggcaaacatc
cgccatgtggagaaacagatgggaaacagccctttttacattcagaccaagctcgatgga
gagcgtatgcaactgcacaaagacggggatgtgtacaagtacttcagccgaaatgctttt
gaatacaccaagcagtttggagaatccccgctggcaggctcactgacaccttacatccac
aacatttttaaaagccacgttgtgaactgtatcctcgacggtgagatgatggcgtacaac
cccaccacagaaaccttcatgcagaaagggagcaaatttgacatcaagaaactcatggac
gactctgagttacagacgtgcttctgcgtcttcgacgtgttgttagtcaatgaccagaag
cttggcaaggaaacactgaagaagcgccacgagacccttcagacagttttcactccagtc
caaggaaggatacacctggtgccaaaggtcgatgccagaaccatgcaagaggtggtgaat
gccctcaatgacgctattgacggccgagaagaggggatcatggtgaaggatccttcatcc
atctacaaacctgacaagcggggggagggatggttgaaaataaagccagaatatgttgat
ggtttgatggatgagcttgatgtgataattgttggtggctactgggggaaagggagacgg
ggtgggatggtgtcccatttcttatgtgccgttgccgaagctccaaagcctggcgagaaa
ccctccgttttccacactatctgccgcatcggctctggctacaccatgaaggagttgtat
gaccttggtttaaagctagcgaagcattggaaagtctatcggaaaaatgacccaccagca
tccatcttgtgtggaacagagaaaccagaagtttacatcgaaccctgcaactcggtcatc
ctccaagtcagggcggctgaagtagtcggaagcgacatgtataaaaccaactgcaccctg
cgcttccccaggatcgagaagatccgcgacgacaaggagtggcaccagtgcatgaccctg
gcagagctggatcagttacgcggtaaggcgtctgggaaactcgcctcgcggcaccttcac
atcgatggcaacgaagcgcaaaagaagaagcgcaagctgacaatcaaacccaggaaagtg
gtcgggatcatcgaccacttcaagccccaggacctctccggggttaccaaggagacagat
atgtttgaggatgtggagttctgtatcctgaacggcacagaggagcaacccaaggcagag
ctggaaaagggcgtggccagatgtggtggtatcgtggttcaaaacccaggacgggacacc
tactgcgtgattgctggcatggagaacatgcgtgtgaagaacctggtttcgtccgaccag
catgacgtggtgtgggccgactggctgctggagtgcctgggccagaaggaagtggtccca
tggcaaccacgtcacatgatccacatgtctccctccactaaggagcactttgccaaggag
tatgacagctacggcgacagctacttcgtggacacagacgagcagcagctgaaggaggtg
tttggccggatcagcaacgaggacgcgtctgtggcggtgaacatctgccaggtggagcag
cgctatggctgggaggaccttcccagcagcatgttcagacccttcgaggtttacatggac
agctacaccgacataggagaccctgaaaccgccacacccgcctcctctttggacatcagg
gcgctggagttttgttaccatggagggacggtggtgcagaagttggaggaaggagtctct
cacgtcattatcacagaggaaacaagacttctgcatttaaggactcagagacgctgcttt
aggaagaagtttaagattgtaagagaatcatgggtgactgattcaatcaaagcagggcat
gtgatgaatgacactgactacttagtttga

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