Clupea harengus (Atlantic herring): 105888969
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Entry
105888969 CDS
T09045
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-3 isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
char00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
105888969 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105888969 (cngb1a)
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
105888969 (cngb1a)
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GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
105888969
NCBI-ProteinID:
XP_031425347
UniProt:
A0A6P8FQC6
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Position
6:23465884..23486361
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AA seq
1245 aa
AA seq
DB search
MFSWVVKVVPQPPDPPGKLGEEDKPIPPPDKKVSFKEEAPKEGPKPVKPKEEEVSQETGN
QSGVLTWLSHGFSSALPQPAGSPRLSRANSEVKDDASGTSKADEAEGSGVMGWFVQGLGK
VVPQPDDKYKETAEAEESTEVHEMKDVPDAEPLIPVVELVSDDEEDNKAAPPSVINWIKQ
GLEKVVPQPVDGHSEVTVKKESVISPPPEISKAEEESISSNMVGWIVSGFGRIMPQPVLK
TGENCESMQNVCLLQDPEDMVLEEVESDWETEQKEQGTAQPAEEATQPKTLGMSLLQALP
QMMPHVLAMEDQEDAETQTERLTPRIVNIRKEAEQIAMASLEESRLQKQRLEAARAAEDL
ARQAAQQAVRQLEKDQGTPIAPLAEPDDGEQLPDIQEEENEEDPELQGLLEESEEESVQN
KTTEAEMKSCLLEIVAAEEEELPEVPSPEPPKVTAKKASIPDKAPVTTQPQPASKEPTPP
ANQEEDKTEGGCGDVILEVVVNVENLDVKAPSIPQIIIPDDPELMGISVPMLAANGKTVD
PEDGELKTKSLLGLDDEMKERPHSSASHTGIDVNERLQELVKLFKERSERARDRLIDPDE
SDEESPSSSPVKKAAPGDPPPPPPPEETKDAPAEQAVEEEEKEQFFEFMGHQIKLPKLKL
PPLPGWARTIVDYRFPDSIDPVTNLVYVLWLFFVTCAWNWNVWLIPVRWAFPYQTSDNLH
WWLLIDYSCDLIYILDILIFQPRLQFVRAGDIVCVKKDMRENYMSTLRFKMDVISLFPMD
LLYFKTGVNSLLRFPRMLKYMAFFEFNDRLEAVMSKAYIYRVIRTTAYLLYSLHINACLF
YWGSDYQGLGSTKWVYNGKGNKYIRCYYFAVKTLITIGGLPDPTSVFEITFQGVNYFVGV
FIFSIMIGQMRDVIGAATAGQTYYRSCMDSTIKYMTTYRIPSEVQNRVKTWYDYTYTAQG
MLDEQELLIELPDKMRLDMAVDVNYSIVSKVALFQGCDRQLIFDMLTRLKSVVYLPGDFV
CKKGEIGREMYIIKAGEVQVVGGPDLKTVFVTLRAGSVFGEISLLAGGGGNRRTANVKAH
GFANLMILDKKDLTDIMVHYPESQKLLRKKAKVMLTKDKKPEAGGAGKKGEEVIPTRPET
PKLFKAALVVTEHAGIKGTFAKLKETYKEPGLEPSSLTSMPPSTPVRRRSPIPKIMAQDV
DDTVSETADSSVVIRMTPRQGGEEVLSVEQGAGEKEGGDAKGKGK
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctgggtggtgaaagtggttccccagcctcctgatcctccaggaaaacttggg
gaggaagacaagcccataccacctccagacaagaaagtgtcatttaaagaggaagctcca
aaggaaggccccaaaccagtcaagcctaaagaggaagaagtctcacaggaaactggtaac
cagagtggagtgttgacctggctctctcatggcttctctagtgctctgccccagccagca
ggaagcccgaggctgtccagagcaaattcagaggtgaaggatgatgcatcgggcaccagt
aaggcagatgaagctgaaggcagcggagtcatgggctggttcgtgcagggactgggaaaa
gtggttcctcaaccagatgacaagtataaagaaacagcggaagcggaagagagcacagag
gtgcatgaaatgaaagatgtccctgacgctgagcctctcatccctgttgtggagcttgtg
tcagatgacgaggaggataacaaagctgcccctccaagtgtcattaattggataaagcaa
ggcttagagaaggtggtcccacagccagttgatggtcactcagaggtcacagtaaagaag
gaatcagtgatatcccctcctcctgaaatctccaaggctgaggaggaatctattagctcg
aatatggtcggctggattgtgtcgggctttggccgcatcatgcctcaacctgtgctgaaa
actggggagaactgtgaatcaatgcaaaatgtctgtctgctgcaggacccagaggacatg
gtcctggaggaggtagagtctgattgggagactgaacagaaggagcagggcactgcccag
ccggctgaggaggccacacagcccaagaccctgggcatgtccctgctgcaagccctgcct
cagatgatgccacatgtgctggccatggaggatcaggaggatgctgagacccagacggag
agattgacaccccgcatagtcaacatcaggaaagaggcagagcagattgcaatggccagt
ctggaggagagcaggctgcagaaacagcgtctggaggcggcccgcgcggctgaggatctg
gcccggcaggcggcacagcaggctgtcagacagctggagaaggaccagggcaccccgata
gccccgctagcagagcctgacgatggagagcaactgcccgatatccaggaggaagagaat
gaggaagacccagagctgcaggggctgcttgaggagagtgaggaggagagtgtgcagaat
aagaccactgaagcagaaatgaagagttgcttactagaaatagttgctgctgaggaagaa
gaacttcctgaggttccatccccagagccacccaaggtcacggcaaagaaagcctcaatt
cctgataaggcaccagtgaccactcagcctcagccagctagcaaagagcccactccacct
gctaaccaggaagaagacaagacagaggggggctgtggagatgtcatccttgaggttgtg
gtaaatgtggaaaatctggatgtaaaagctccgtccattccccagatcatcatccccgat
gaccctgagctaatgggcatcagtgtgcctatgctggcagccaatggaaagacagtcgac
ccagaagatggagagctaaagaccaagagtctcctcggcttggatgacgaaatgaaggag
cggccgcactcatcggctagccacaccggcatcgatgtgaacgaacggctgcaggagctg
gttaagctgttcaaggagcgttcagaacgcgcccgagatagactcatagacccagatgag
tctgacgaagagagtccatcctcctctcctgtgaagaaggccgcaccaggggatcctcct
cctcctccaccccccgaggagacaaaagatgcccctgctgaacaggcggtggaggaagag
gagaaagagcaattctttgaattcatgggccatcaaattaaattacccaaactcaaactt
cctccactgccaggctgggctagaaccatcgtcgactaccgcttccctgacagtattgac
cctgttaccaacttggtctacgtgttgtggctgttctttgtgacatgcgcttggaactgg
aatgtttggcttatccccgttcgctgggccttcccgtatcagacctcagacaatcttcac
tggtggctactcattgactactcttgcgacctcatctacattctggatattcttatcttc
cagcccagactccagtttgtccgtgctggagacatagtgtgtgtcaaaaaggacatgaga
gagaactacatgtcaactttgagattcaagatggatgtgatcagtctgttccctatggac
ctgctgtacttcaaaacaggtgttaactcccttctgcgcttccctcgcatgcttaagtac
atggcattcttcgagtttaatgaccgcttggaggcggtcatgagtaaagcctacatttac
agagtaatcaggactaccgcctacctgctgtactccttgcatatcaatgcatgtctgttt
tattggggctcagactatcaaggcctgggctccactaagtgggtttataatggcaaaggg
aacaagtacatacgttgttactacttcgcagtgaagaccctgatcactatcggtggttta
ccagatcccacctcagtttttgaaattacctttcaaggggtcaattactttgtgggtgtg
ttcatcttttctatcatgattggtcagatgagagatgtcatcggagcagctacagcagga
cagacatactatagatcttgtatggacagcaccatcaagtacatgacaacctatcgcatt
cctagtgaagttcagaaccgggtcaaaacctggtatgactacacctacacagctcaaggc
atgctggatgagcaggaattgcttatagagctgccagataagatgaggcttgatatggca
gtggatgtgaactattccattgtcagcaaagttgccctctttcagggttgtgacagacag
ttgatatttgacatgctcacaaggcttaagtctgtagtctatctaccaggagattttgtc
tgtaaaaagggagagattggtcgtgaaatgtatatcataaaagcaggagaggtgcaagtg
gtgggtggtcctgatttgaagactgtgtttgtgacactgagggcaggttctgtgtttgga
gaaatcagcctcttggcagggggtggaggtaacagacgtaccgcgaatgtcaaggctcac
gggtttgctaacctaatgatcctggataaaaaggacctgactgatatcatggtgcactat
cctgagtcccagaagctgcttcgcaagaaggccaaggtaatgttgacaaaggataagaag
cctgaagctggaggtgcaggcaaaaaaggtgaagaagtgatcccaacacgcccagagacg
cccaagctcttcaaagctgccctggtcgtaacggagcacgctggcatcaaaggcaccttc
gccaagctaaaggaaacatacaaagaacctgggctggagccatcctctttaacttccatg
ccaccctccacgcctgtgcgtcggcgctctcctatcccaaagattatggcccaggacgtg
gatgacacagtatctgagacagccgacagcagtgtggtcatccgtatgaccccgcgacaa
ggaggagaggaggtcctctctgtggagcagggagcaggagagaaggagggtggcgatgca
aaagggaaggggaaataa
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