KEGG   Clupea harengus (Atlantic herring): 105891741
Entry
105891741         CDS       T09045                                 
Symbol
phf1
Name
(RefSeq) PHD finger protein 1 isoform X1
  KO
K11467  PHD finger protein 1
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    105891741 (phf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:char03000]
    105891741 (phf1)
   03036 Chromosome and associated proteins [BR:char03036]
    105891741 (phf1)
Transcription factors [BR:char03000]
 Eukaryotic type
  Zinc finger
   Other zinc fingers
    105891741 (phf1)
Chromosome and associated proteins [BR:char03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     105891741 (phf1)
SSDB
Motif
Pfam: Tudor_2 PHD Mtf2_C PHD_ash2p_like PHD_2 Chromo ASH2L-like_WH DUF4537 zf-RING_Vps41 PHDvar_NSD
Other DBs
NCBI-GeneID: 105891741
NCBI-ProteinID: XP_012673376
Ensembl: ENSCHAG00000006133
UniProt: A0A6P3VJS7
LinkDB
Position
11:complement(6516835..6528582)
AA seq 506 aa
MGVVNEGDDVLARWSDGLLYLGNVKRVDGVKQCCLVRFEDNSEFWVLRKDIHSFSVGVEE
LCCICDGPPLKEPLINCLKCRHGYHSQCHTPEIEAEADSDSWICRQCVFAVATRRGGALK
RGRFARLMQFMKLRLPYQLSSLDWDPQHLTNQQQCYCYCAGPGEWNLKMLQCGSCGQWFH
EACTQCLTKPLLYGDRFYRFQCSVCTNGPETIQRLPMSWVDLAHLVLYHLSLCCKRKYFD
FDHEILSFTNENWESLLLGELSDTPRQDRCHNLLNALNSHKDRFVSGKEIKKKKCLFGLQ
VRAPPPLLSDASPLIAEPPINITHRKSPLSLPCQRRVAGQESRKSKRRIMETQPCPQGAA
ASPIDLVPCCHGYVGGTNLYNSRKSEEELTLGSPPKRMFALYHPSYNGSQPLSRALHHYS
AEDPCRHPPPCLPYNLSPSHHQPGQRLDPCPSRFLRDVTSFSGGVTGEGPAPRGWGGGEA
VRILARRITPDGKVQYLVEWGNVSVY
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgggggtagtgaatgaaggagatgatgttttagcaagatggagtgatggactactttac
ttgggcaatgttaaaagagtggatggagtcaaacagtgctgtttggtccgatttgaggac
aattctgagttctgggtcttaagaaaagacatccactcattctctgttggagtagaggaa
ctttgttgtatctgtgatggtccacctctaaaagaacctctcataaactgtctcaagtgt
cgccatggttaccattcacagtgccatactccggagattgaggcagaagctgacagcgac
tcctggatctgtcgccagtgtgtttttgcagttgccacaaggagagggggtgccttgaag
cggggacgcttcgcccgactcatgcagttcatgaagctccggctgccctatcagctgtcg
tctctcgactgggacccccagcacctgaccaatcagcagcagtgttactgctactgcgcc
ggtcctggagagtggaacctgaagatgctgcaatgtggcagttgtggtcagtggttccat
gaagcgtgcacacagtgcttgaccaaacccttgctctatggagacaggttctatcggttt
cagtgttcagtctgcacaaatggacccgagacaatccagaggctaccaatgagctgggta
gacttggcccatttggtcctttatcacctgtctctgtgctgcaagaggaagtactttgat
tttgaccatgaaatcctgtcttttaccaacgagaactgggagtctcttctactgggagag
ctctctgacacgccgaggcaagatcgatgccacaatctgctcaatgctctaaactcccac
aaagacaggtttgtctctggtaaggagatcaaaaagaagaagtgtctgttcgggcttcag
gtgcgggcgcctcctcctctcttgtccgacgcgtctccgctcatcgccgagccccccatc
aacatcacacacaggaaaagccccttgtcactgccatgccagcggagggtggcgggtcag
gagtctcgcaagtcaaagcgccgcatcatggagacacagccttgtccacaaggagcagca
gccagccccatagatctggtgccatgttgccatggttatgtaggtgggacgaacctctac
aactccagaaaatccgaggaggagttgacgttgggttcccctccgaagagaatgtttgcc
ctctaccacccctcctacaatggctctcagcccctgtccagagccctgcatcattacagt
gcggaggacccttgcagacacccgcctccctgccttccgtacaacctctcaccatcccat
caccagcccgggcagcggttggacccgtgtccctcacgcttcctgcgtgatgtcacttcc
ttctccggtggggtgacaggggaagggccggcgcccaggggttggggagggggggaggcc
gtgaggatcctcgccagacggataactcccgatggaaaggtccagtacctcgtggagtgg
ggcaatgtgagcgtgtactga

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