Clupea harengus (Atlantic herring): 105891741
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Entry
105891741 CDS
T09045
Symbol
phf1
Name
(RefSeq) PHD finger protein 1 isoform X1
KO
K11467
PHD finger protein 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
105891741 (phf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
char03000
]
105891741 (phf1)
03036 Chromosome and associated proteins [BR:
char03036
]
105891741 (phf1)
Transcription factors [BR:
char03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
105891741 (phf1)
Chromosome and associated proteins [BR:
char03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
105891741 (phf1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_2
PHD
Mtf2_C
PHD_ash2p_like
PHD_2
Chromo
ASH2L-like_WH
DUF4537
zf-RING_Vps41
PHDvar_NSD
Motif
Other DBs
NCBI-GeneID:
105891741
NCBI-ProteinID:
XP_012673376
Ensembl:
ENSCHAG00000006133
UniProt:
A0A6P3VJS7
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All DBs
Position
11:complement(6516835..6528582)
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AA seq
506 aa
AA seq
DB search
MGVVNEGDDVLARWSDGLLYLGNVKRVDGVKQCCLVRFEDNSEFWVLRKDIHSFSVGVEE
LCCICDGPPLKEPLINCLKCRHGYHSQCHTPEIEAEADSDSWICRQCVFAVATRRGGALK
RGRFARLMQFMKLRLPYQLSSLDWDPQHLTNQQQCYCYCAGPGEWNLKMLQCGSCGQWFH
EACTQCLTKPLLYGDRFYRFQCSVCTNGPETIQRLPMSWVDLAHLVLYHLSLCCKRKYFD
FDHEILSFTNENWESLLLGELSDTPRQDRCHNLLNALNSHKDRFVSGKEIKKKKCLFGLQ
VRAPPPLLSDASPLIAEPPINITHRKSPLSLPCQRRVAGQESRKSKRRIMETQPCPQGAA
ASPIDLVPCCHGYVGGTNLYNSRKSEEELTLGSPPKRMFALYHPSYNGSQPLSRALHHYS
AEDPCRHPPPCLPYNLSPSHHQPGQRLDPCPSRFLRDVTSFSGGVTGEGPAPRGWGGGEA
VRILARRITPDGKVQYLVEWGNVSVY
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgggggtagtgaatgaaggagatgatgttttagcaagatggagtgatggactactttac
ttgggcaatgttaaaagagtggatggagtcaaacagtgctgtttggtccgatttgaggac
aattctgagttctgggtcttaagaaaagacatccactcattctctgttggagtagaggaa
ctttgttgtatctgtgatggtccacctctaaaagaacctctcataaactgtctcaagtgt
cgccatggttaccattcacagtgccatactccggagattgaggcagaagctgacagcgac
tcctggatctgtcgccagtgtgtttttgcagttgccacaaggagagggggtgccttgaag
cggggacgcttcgcccgactcatgcagttcatgaagctccggctgccctatcagctgtcg
tctctcgactgggacccccagcacctgaccaatcagcagcagtgttactgctactgcgcc
ggtcctggagagtggaacctgaagatgctgcaatgtggcagttgtggtcagtggttccat
gaagcgtgcacacagtgcttgaccaaacccttgctctatggagacaggttctatcggttt
cagtgttcagtctgcacaaatggacccgagacaatccagaggctaccaatgagctgggta
gacttggcccatttggtcctttatcacctgtctctgtgctgcaagaggaagtactttgat
tttgaccatgaaatcctgtcttttaccaacgagaactgggagtctcttctactgggagag
ctctctgacacgccgaggcaagatcgatgccacaatctgctcaatgctctaaactcccac
aaagacaggtttgtctctggtaaggagatcaaaaagaagaagtgtctgttcgggcttcag
gtgcgggcgcctcctcctctcttgtccgacgcgtctccgctcatcgccgagccccccatc
aacatcacacacaggaaaagccccttgtcactgccatgccagcggagggtggcgggtcag
gagtctcgcaagtcaaagcgccgcatcatggagacacagccttgtccacaaggagcagca
gccagccccatagatctggtgccatgttgccatggttatgtaggtgggacgaacctctac
aactccagaaaatccgaggaggagttgacgttgggttcccctccgaagagaatgtttgcc
ctctaccacccctcctacaatggctctcagcccctgtccagagccctgcatcattacagt
gcggaggacccttgcagacacccgcctccctgccttccgtacaacctctcaccatcccat
caccagcccgggcagcggttggacccgtgtccctcacgcttcctgcgtgatgtcacttcc
ttctccggtggggtgacaggggaagggccggcgcccaggggttggggagggggggaggcc
gtgaggatcctcgccagacggataactcccgatggaaaggtccagtacctcgtggagtgg
ggcaatgtgagcgtgtactga
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