Clupea harengus (Atlantic herring): 105898950
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Entry
105898950 CDS
T09045
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04510
Focal adhesion
char04512
ECM-receptor interaction
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105898950 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105898950 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105898950 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
char00535
]
105898950 (col9a3)
Proteoglycans [BR:
char00535
]
Extracellular matrix (ECM) proteoglycans
Others
105898950 (col9a3)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
105898950
NCBI-ProteinID:
XP_031422258
UniProt:
A0A6P8F157
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Position
4:complement(15380620..15402023)
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AA seq
678 aa
AA seq
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MAMFSALGLFLLCQLLTSSLAQRPGPRGPVGPPGPLGPAGTDGTDGKPGPAGLAGKPGPK
GQPGKPGTAGSPGLPGLPGVDGLTGSDGLAGIDGPPGLLGEAGPPGPAGPPGRGRSGAPG
LPGANGLPGGVGPQGSTGPEGLPGLPGAEGLDGPPGLPGALPDGSGDLLCPAICPHGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGDSGPPGPPGIPGTVGLQGPRGLRGLQGPVGAVG
DRGMPGFRGKHGPPGIIGKTGDAGERGPQGFKGPKGEIGKIGPKGGPGPSGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRHGVPGEKGPNGLPGLQGRAGGKGAKGGLGDSGEMGEAGPSG
EPGIPGDIGIPGARGEPGPRGVVGGLGPVGNMGHDGTKGYQGVKGALGDPGLPGPTGIRG
GFGERGPVGASGPKGDMGVAGSDGLPGENGEPGPFGPVGQKGESGKRGELGPKGVSGPQG
EMGARGGPGKTGLMGLQGEQGRPGIAGKTGVPGKLASEQLIRELCGSMVDDQIAQLAANL
RRPLAPGAVGRPGPAGQAGTPGELGSVGHPGARGPPGYRGLPGDLGDPGPRGAVGEQGDK
GTIGKAIDGPPGDQGEQGLTGVHGIVKDGRDGAPGDAGEPGEAGRTGRTGHQGPPGICDT
SACHGASVAGKTGSSKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctatgttctcagctctaggactatttttactatgccagcttttgacatcatccctt
gcccagagacctggacctcgtggaccagtaggacctccaggccccctaggacccgcaggg
acagatggcacagacggaaaacctggtccagctggacttgctggaaagcctgggcctaaa
ggtcaacctggaaagccagggacagccggaagcccaggactgcctggtctgcctggagtt
gacggattgaccggttctgatggccttgctgggattgatggacctcctggactattaggg
gaagccggacctccaggaccagccggaccacctggcagggggagatcaggagctccaggg
ctaccaggagctaatggactgccaggcggagtaggacctcagggttcaacaggaccagag
ggtcttccaggacttcccggcgcagaaggccttgatggacccccaggtcttccaggggca
cttcccgatggcagcggtgatcttttgtgtccagccatttgtccacatggcccatctggt
cctcctggaatgccagggttcaagggtcacaccggacacaaaggagacaagggagagctt
ggaaaagacggagagaagggtgactcaggtccccctggtcctccaggtattccaggcaca
gtgggtctccagggtcctagaggtctaagaggactgcagggcccagtgggggcagttggg
gacaggggaatgcctggcttcaggggcaaacatggccctcctggaatcattggcaaaaca
ggagatgctggtgagagaggaccacagggtttcaaaggaccaaaaggagagattggaaag
atcgggcctaagggaggcccagggccatcaggacccaagggggagcccggcattcctggc
agagacggcaaggatggcactcagggattagatggagagaagggagatgctggaagacat
ggagtgcccggtgagaaagggcccaacggcctgcctggtttacaaggaagggctggagga
aaaggagccaaaggaggacttggtgactctggagagatgggagaagcaggaccgtctgga
gagccaggtattcctggtgacattggaattccaggagcgaggggagagcctggacccaga
ggtgtggtgggtggccttggaccagtgggaaatatgggacatgacggcacaaaaggctac
cagggagtcaagggagcccttggagaccctggccttcctgggccaacgggaatcagagga
ggatttggtgaacggggtcctgttggagcatctggccctaaaggagatatgggtgtggcc
ggaagtgatggtttgccaggagaaaatggcgagcctggtccatttggccctgttggacaa
aaaggagagtctgggaagcgtggtgagctggggcctaaaggcgtgtcagggccccaggga
gagatgggagccagaggaggcccaggaaagacaggcctgatgggactgcaaggagagcag
ggccggcccggcatcgctggaaagacaggcgtgcctgggaaactggccagtgagcagctc
atcagggagctctgtggatcaatggttgatgatcagattgcgcagttggccgccaacctg
aggaggccccttgctccaggagcagttggccgccctggcccagctggccaagcaggaaca
ccaggagagcttgggtccgtcggacaccccggagctcgtggacctccaggatacagaggc
cttcccggagacctgggtgaccccggccccagaggtgctgttggagagcaaggagacaag
ggaacaattggcaaggcaattgatgggccacctggagaccaaggagagcagggtctgaca
ggagtgcatggaattgttaaagacgggcgtgatggtgcccccggagatgcgggagagcca
ggagaagcaggccgaacgggccgcaccggacaccagggcccgcctgggatctgcgacacg
tccgcctgccatggggcgtctgtggccgggaagaccggcagttccaagaaccattag
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