Clupea harengus (Atlantic herring): 105909413
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Entry
105909413 CDS
T09045
Name
(RefSeq) calpain-1 catalytic subunit-like isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04141
Protein processing in endoplasmic reticulum
char04210
Apoptosis
char04217
Necroptosis
char04218
Cellular senescence
char04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105909413
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
105909413
04217 Necroptosis
105909413
04218 Cellular senescence
105909413
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105909413
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
char01002
]
105909413
Enzymes [BR:
char01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
105909413
Peptidases and inhibitors [BR:
char01002
]
Cysteine peptidases
Family C2: calpain family
105909413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
CAPN13-like_C_EFh
EF-hand_6
EF-hand_7
EF-hand_8
Motif
Other DBs
NCBI-GeneID:
105909413
NCBI-ProteinID:
XP_031436655
UniProt:
A0A6P8GPB1
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Position
14:26655098..26664525
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AA seq
713 aa
AA seq
DB search
MPPPGVCLSIRNERNRRSGRGSATNPDKFLDQDFDQLHQGYYLKNDLFIDRMFPPEWRSI
GDGLLHPNDLARIVWRRPGTMVKDPYFILDGVSRFDVRQGGIIGNCWFLASIGALTFQED
IKKQIIPEGQSFKKDYAGIFHFRFWRFGKWVDVVIDDTLPTIDGRLIFVYSKTPNEFWAA
LMEKAYAKVCGSYADMNAGSVSEALMDLSGGIHMTFKLDEAPPDLWDIMDRAAKSASLMA
CGTPPGLSPANTVLPNGIVHGHAYTITGLMQVMSNSHLVRLVRLLNPWGHGEWKEDWSDK
SSKWKTVSLEDRTTCLTIADDGEFWMSMEDFCKNYSDMDICSLSHDFLDGSTDCHWPYQF
HKGRWVTGATAGGCSNYKESFWTNPQYHIQVETIKGECAKDKGLKNLLVSLMQKSDKRNR
RLASNFHIGFSVFSVPPEYKGREGKFPAEFFMRNPVASTKKYLNAREVMEFFRLVPGEYI
IVPSTFKPNETASFILAIHSKTDSHLLDENSIDSLKITEPIPTENMNDNDSRVTIFQKYT
DQYEEVDAEQLQRLLNENLLQGKSPGFGLDTCRSMVTLMDLSVTGHLNHNEFLRLWDRVV
RYREIFYRTDTSRTGDLSLSELRNAVIAAGIQMSDDLLNLMALRYGGSTGSLTLESFVSL
ILRLECMSKIFRNLSDGKGIYLQEKEVTNVVKQMLLSLYLLFIARNIYQNNEQ
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcctggtgtgtgtttgagtattaggaatgaacgcaataggcgaagtggccga
ggatctgcaaccaaccctgacaagttcctggaccaggacttcgatcaattgcatcaagga
tactacctcaagaatgatttgtttatagacaggatgtttcctcccgaatggaggtccatt
ggtgatggacttctccatccaaatgacttggcaagaattgtgtggcgaagaccagggaca
atggtgaaagatccttattttattcttgatggagtctcacggtttgacgtaaggcaaggt
ggaattattggaaactgttggtttcttgcgtctattggagcactgacatttcaagaggac
atcaagaaacaaattataccagaaggacaatctttcaaaaaagactatgcaggaatcttt
cactttaggttctggagatttgggaagtgggtagatgtggtgattgacgacacgcttcca
acaattgatgggaggctgatatttgtgtactcaaaaacccccaatgagttttgggctgca
ctgatggagaaggcctatgccaaggtatgtggctcctatgctgacatgaatgctggcagt
gtgtcagaggccctgatggacttgtcaggggggatccacatgacattcaagctggatgaa
gccccccctgacctgtgggacatcatggacagagctgccaagtccgcgtccctcatggct
tgtggcactccaccagggctgtcaccagccaacactgttctgcctaatgggattgttcat
ggccatgcctacacgattacaggattaatgcaggtcatgagcaatagtcaccttgttaga
ctagtgaggttgttaaatccttgggggcatggagaatggaaggaagactggagtgataaa
tcatccaaatggaaaactgtcagtctagaggaccgaacaacttgcctcaccattgctgat
gatggtgaattttggatgtcgatggaggatttctgcaagaactattctgacatggatatc
tgctctttgagccatgatttccttgatggatccacagattgtcactggccataccagttc
cataaaggaagatgggtcactggtgctactgctggtggttgcagtaattataaagagagt
ttttggacaaaccctcagtatcacatccaggtggaaaccattaagggtgaatgtgctaag
gacaaggggctaaagaaccttctggtgtccctgatgcagaagtctgacaagaggaacagg
cgcttggcctccaacttccacattggtttctcagttttcagtgtgccacctgagtacaaa
ggaagagaggggaaattccctgcagagttcttcatgaggaaccctgtggcttcaaccaaa
aagtacctcaatgctcgagaagtcatggagttcttcagactggtcccgggcgagtacatc
attgtcccctctactttcaagcccaatgagacggcttccttcatcctggccatacactcc
aagacagacagccacctccttgatgaaaattccatcgacagtttgaagattacagagccc
atccctactgaaaacatgaatgacaatgactccagagttaccatatttcagaagtacact
gaccagtatgaagaggtggatgcggagcagctacagaggcttctgaatgagaaccttctc
caaggaaagtcaccgggctttggcttagatacctgccgtagtatggttaccttgatggat
ctctctgtcacgggccatctcaatcacaatgaatttcttcgactctgggaccgagttgtc
agatacagggaaatcttttaccgcactgacacctcgaggactggcgatctgtcccttagt
gaactacggaatgctgtgattgccgcaggtatacagatgagcgatgacttgcttaacctc
atggctctccgctacggtggctcaacgggaagcctgacgctggagagctttgtgtcactc
atcctgcgcttggagtgcatgtccaagatcttcagaaatctgtcagatgggaaaggaatc
tatctccaggagaaggaggtaactaatgttgtaaaacagatgttattatctctttattta
ctttttattgccagaaatatttatcaaaataatgaacaatga
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