Colletotrichum higginsianum: CH63R_01383
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Entry
CH63R_01383 CDS
T08176
Name
(RefSeq) Tetratricopeptide
KO
K12600
superkiller protein 3
Organism
chig
Colletotrichum higginsianum
Pathway
chig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH63R_01383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_01383
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
CH63R_01383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_22
TPR_16
TPR_2
TPR_CcmH_CycH
TPR_1
TPR_14
TPR_12
TPR_17
TPR_8
TPR_11
TPR_7
ARM_TT21_5th
ARM_TT21_N
TPR_9
ANAPC3
TPR_6
ARM_TT21_C
TPR_Slam
ARM_TT21
T7SS_EccA1_N
DUF3517
RPN6_N
Peptidase_A3B
TPR_COPA_B
Motif
Other DBs
NCBI-GeneID:
28860465
NCBI-ProteinID:
XP_018164720
UniProt:
A0A1B7YVZ7
LinkDB
All DBs
Position
1:4703652..4707955
Genome browser
AA seq
1413 aa
AA seq
DB search
MSGAKAALKAIGDSVKQQKWDDAIQKATEFLEREPKNYQATIFLAFALDKKNRVDDSERA
YKSASLLRPKDSQAWQGLIKLYEKQDRKRLGAYQQAAISLAELYRDSDDMYKCQDVIDKF
IDFARSQGDTSQYIEALSVILPGSPIYPALEGRVPHPAKTYETMAQIIEADEKKRINTLI
GERRTRIGARLNEVTLEVKREVMAQSKLEFVYQQLINWTNDDELRRKYEEKLLQYCYDRL
LVAPAGPEKGAALQAVLKLALDMVIIKHPFRLAWEIAIDWKDAKEIKDWDVNMLRDYCSF
FPETDLYKVITGFLTSSISPFPKASPAALEAEETEEESEDDEGGGVSMVPLTEQDRILMM
TEGITTSNSLFAHRLVGDYYQHLEEYEINMELMRKSMEYLKTERIKTGMTFQNTQDAYSL
YLATALVFYQSPRHHTEAKALFEGVLGHDPSSTAALIGVGLIYEEEEDYDDAIEFFERAL
KRDPSNLRVKTEAAWVQALKGDYETAKSQLEASLPLIEKVSPPAKELLAQTQYRLGSCVW
NIDTSKAARKSRTGAYVYFLDALRNNLNFAPAYTSLGVYYADYANDKKRARRCFQKAVEL
SSSEVEAAKRLAQSFADEGDWDRVELVAQRVVDSGKVRPPPGSKRKGISWPFAALGVAEL
NKQEFHKSIVSFQSALRIHPDDYHSWVGLGESYYSSGRYVAATKAILNAQRLEETIPSEV
LGDTWFTKYMLANVKRELAEFDEAIGLYQDVIDSRPHEDGVAIALIQTMVDNALDSVEKG
LFGKAIHLAIDTISFASKAAASVVGTFNFWKSLADACSVFSAVQNRAVDFPAESIMALID
GGDKEAYTIFADVDKVGTGVISAKGLFSDDERLGVDLTRCIHATILCHKRAIHVSAHDLH
AQAVAYYNLGWAEHRAHICLPSSIRKKSSVYLKTAMKCFKRAIELEAGNSDFWNSLGVVT
SEISPAVSQHSFVRSLHLNERSPATWTNLGTLALLQNDMQLANEAFNRAQSTDPDYAHAW
LGQGFVALLYGKTKEARGLFTHAMEIAEASSIITRRQYPLAVFDHILTTRSTNVASLIQP
IFALGQLNNLKPQDLAYGHLATQFLERTQDTVKAVQILEKICGILEADYEVTESPKALAQ
FALAKTDLARSYLASGAYEQAIECGEMAIQLSDDESDNELTKEERKKARLSAHLTVGLAQ
YYSKDVNEALLCFESALEESDNNPDAVCLLAQVLWATGAEESREKARGALFEVIEDQPDH
VQSVLLLGVIAVLDNDEESVEAVVSELQGLRTSHKVGDNEQSHIGEVLGAITKLGETSTD
EDVMTQIQTDIMLYPHLPHGWSNLAEFGGEQYAAEMALTVAKKGAPPRGTLEAEDLAKAY
AGTGVAADAQTAIFLSPWKTDGWNSLRDAVYGN
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtgccaaggctgccctcaaggccattggcgactctgtgaaacaacagaaatgg
gacgatgccattcaaaaggcaactgaattcctcgagcgagagccgaagaactatcaggca
accatcttcctcgcctttgcgcttgacaagaagaaccgcgtcgatgactccgagagggct
tacaagtctgcttcgttgctgcggcctaaagacagccaggcatggcaaggtctgatcaag
ctctacgagaagcaggaccgcaaacgcctaggcgcataccagcaagctgccatcagcttg
gccgagctctaccgggactccgacgatatgtacaagtgccaggatgttatcgataaattc
atcgactttgcgagatcccagggagacacttcgcaatacatcgaggctctcagcgtcatc
cttcccggtagccccatctatcccgctcttgagggacgggtaccacacccagccaagacc
tacgagacaatggcacaaatcatcgaggccgacgaaaagaagcgcatcaacaccctgatc
ggcgagcgccggacaagaattggcgcacgcctgaatgaggtgactcttgaggtcaagcgt
gaagtcatggcccagagcaagctcgaatttgtctatcagcagctgatcaactggacaaac
gatgacgaactacggcgaaagtatgaggagaagcttctgcaatactgttatgatcgtctg
ctggtagcacctgccggcccggagaagggggcagcccttcaagccgtcctcaaattggcc
ctcgacatggtcatcatcaagcaccccttccgactggcctgggagattgccatcgactgg
aaggacgcaaaagaaatcaaggactgggatgtcaacatgttgagagactactgctcattc
ttccccgagaccgatctttacaaagtcatcaccggcttcttgacgagcagcatctcaccc
tttccaaaggcatcgccagcggcactcgaggcggaagaaaccgaagaggagagcgaggac
gacgagggaggtggcgtgtcgatggtgcctctgacggagcaggatagaatcctgatgatg
acggagggtatcaccacatccaactcgctattcgctcaccgcttggtaggagactactat
cagcatctggaggaatacgagatcaacatggagttgatgcgcaagtcgatggaatatctc
aagacggaaagaatcaagactggcatgacgttccagaatacccaagacgcctactccttg
tatctggctacggcgctggtcttctaccagtctcctcgacaccacaccgaggcgaaggcg
ctcttcgagggagtcctcggtcacgacccatcttccactgcagctctgatcggagttgga
ctcatttatgaagaggaagaagattacgacgacgccatcgaattcttcgagcgtgccctc
aagagagacccctctaacctccgggtcaagactgaagctgcttgggtccaggctctgaag
ggggattacgagacggccaagtcacagttggaggcctcacttcctctcatcgaaaaggtg
tcgccgccagccaaggaacttcttgcgcaaacacagtaccgcctgggttcctgcgtctgg
aacatcgacacgtcgaaagcagcccgaaagagccgcacgggtgcttacgtgtacttcctg
gatgccttgaggaataaccttaacttcgcgccggcctacaccagcctcggcgtctactat
gccgactatgccaacgataagaagagagcacgacgatgctttcagaaggctgttgagctt
tcttcctccgaggtcgaagccgccaagcgtctcgcgcaatctttcgcggacgaaggcgat
tgggacagagtcgaacttgtggcccaacgtgtggttgactcaggcaaagttaggccacct
ccaggctccaaaaggaaaggcattagttggccttttgccgcgcttggtgtcgccgagttg
aacaagcaagaattccacaaatccattgtctcattccagtcagccttgagaattcatcca
gatgactaccactcctgggtcggcttgggcgagagctactactcttcaggacgatacgtt
gcagcaacaaaagccattctcaacgcgcaaaggttggaggaaaccatcccctccgaggta
ctcggcgacacatggtttaccaaatacatgcttgctaatgtcaagcgtgagctggctgaa
ttcgacgaagctatcggtctctatcaagacgttattgatagtcgaccccacgaggatgga
gttgcaattgctttaatccagaccatggttgacaatgcattggattctgtcgagaagggc
ctttttggtaaggcgatacaccttgccatcgatactatcagctttgcctcaaaggcagcc
gccagtgtcgtcgggaccttcaacttctggaagtcgctcgccgacgcttgctccgtcttc
tctgcagtccaaaatcgagctgttgacttcccagcagagtccatcatggccctcattgac
ggcggcgacaaggaagcctacaccatcttcgccgatgtcgacaaagtcggtactggagtc
atttctgcaaaggggttgttctccgatgatgagaggcttggtgtcgacttgacaagatgc
atccatgcgacaatcttgtgccacaagcgtgccatccatgtctcagcccacgacctccat
gctcaggctgttgcctactacaacctcggctgggccgaacaccgggcccacatatgcctg
ccttcaagtattaggaagaagtcgagcgtgtacctgaagactgccatgaagtgtttcaaa
cgggccatcgagcttgaggccggaaattcggacttttggaactcgctgggtgtcgtgaca
agcgagatcagtcctgctgtgtcgcaacactcgttcgtccgaagcctccacctgaacgag
aggagcccagcaacatggaccaaccttggaactttggcgcttctgcagaacgacatgcag
ctggccaacgaggccttcaaccgagcgcagtcaacggatcccgactacgctcatgcgtgg
ctcggtcagggtttcgtggctctcctctacggaaagacgaaggaagcaagaggcctgttc
acccatgccatggagatcgctgaggcttcttctatcatcaccagacgccagtacccgttg
gccgtgttcgaccatatcctgactacaaggtccaccaacgtggcgtccttgatccaacca
atcttcgctcttggccagcttaataacttgaagccacaagatttggcatacggacatctg
gcgacacaattcctcgagcgaactcaagatactgtcaaggcggttcaaatacttgaaaag
atttgcggcatcttggaagccgattacgaagtgacagaatctccaaaagctctggcccaa
ttcgcgctggctaagacagatctggcaagatcgtaccttgcctctggtgcttacgagcag
gctattgagtgcggcgagatggcaatccagctgagcgacgatgaatcggacaacgagctg
accaaggaagagcgcaagaaggcccgtctttccgcccacctgacggtgggattggcgcaa
tactacagcaaggatgtcaacgaggcgcttctgtgcttcgagtcagcgctcgaggaatcc
gacaacaaccctgacgcagtgtgcctccttgcacaggttctgtgggcgacgggcgcagag
gagtctcgcgagaaggctcgcggtgctctcttcgaggtgattgaggaccagcccgaccac
gtccagtccgtcctcctgctgggcgtcatagccgtcctcgacaacgacgaggaatctgtc
gaggcggttgtgtccgagcttcaaggcctccggaccagccacaaggttggagataatgaa
cagtctcacatcggcgaggtactcggggccatcacgaaactcggggagacgagcacagat
gaggatgtcatgacccaaatccagacagacatcatgctgtatccccacttgccgcacggc
tggtcgaacctggcggagtttggtggagagcaatatgctgccgagatggcgttgacagtg
gcgaagaagggagcgccgcccagaggaacgctcgaggccgaggatctagccaaggcatac
gcgggtaccggggtcgctgcagacgcgcagacggccattttcttgtcgccttggaagact
gatggatggaactcattgcgggatgccgtctacggcaactga
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