Colletotrichum higginsianum: CH63R_03886
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Entry
CH63R_03886 CDS
T08176
Name
(RefSeq) tRNA intron endonuclease
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
chig
Colletotrichum higginsianum
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chig03016
]
CH63R_03886
Enzymes [BR:
chig01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
CH63R_03886
Transfer RNA biogenesis [BR:
chig03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
CH63R_03886
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
Motif
Other DBs
NCBI-GeneID:
28862968
NCBI-ProteinID:
XP_018160107
UniProt:
H1V3L4
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All DBs
Position
3:1093425..1095845
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AA seq
806 aa
AA seq
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MSQTKNTASQPLQASAPAAAAAASESASGVSTTPRPKGLPLYKIYELPAPIRTFPLPSFY
PNNPISLFHVIFAWAKQSLFPPPAEPSIVHEGVWSPTSKSINIIDEKSMRALWEQGFYGK
GNLSRSEPNWLKREHVRRGLVPGQVSELVTASRREERRQMKWERAKSEQEAIRQLRIREA
QLAANQTAADDTVKPSSPSVETEESPAKTQSTHVPAREASTDTEPLPESTSSLSKSDVAV
NDTKTGVPEVSRDSEVAVFTEPEALELSLEDDAPTVDEPAIELTNGTSSQAVASTITAAH
PSLPLKPEAHIHSGKIAKPSDFLQSREEASGVVVDSKTVVKSEDALPTPLSLSLAPVGPT
ELLSLPNSHGFVAATTEQIAEASMNGDSQKVVVQHLEPADSDPESTNDTSQHSLTNGHSV
PVVATIFPVGPLELLSLPNTNTPLVNGTSIDDANDVDSGSTANFPTVVEKLSTIHENAAF
ADSENKSRTVTGHLINDLVNGVNGERAAHLNGLNGVAKSAVASADIPSTPKSTKRRKSVR
FSPKVESATYELSDPPSPSLALFNVTNGKGMVPANGTALGPSVLEAESKDITKSDDSKSL
ETLTEVEAESTETIEIVNKEHLQLTSEEAFFLAFGMGALRVVDHVTKAPIPTVELFNLFR
SYSYFPSRKVEELQPDDGFLVNYAVYHHFRSLGWVPRAGIKFGVDWMLYARGPVFDHAEF
GAIILPSYSDQWWKDSDRQLPRKTWHWLHGVVRVLSHVQKSLVLVYVDVPAPPQFDEAMK
KGPTEVFKLYKIREVMVKRWSSNRNR
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagactaagaatacggcttcgcagccgctgcaggcttctgcgcctgctgctgct
gctgctgcttcggagagcgcctcgggcgtttcgacaacgcctcggccgaaaggcttgccg
ttgtacaagatctacgagctgcctgctcccatacggacctttccgcttcctagcttctac
ccgaataatccaatttctcttttccatgtcatattcgcatgggcgaaacaatccttgttc
ccaccgcctgctgagccgtccattgtgcacgagggtgtctggtccccaacatccaaatct
atcaacatcatcgacgagaagtccatgcgcgcgctgtgggaacaagggttctacggcaag
ggcaacttaagtcgtagtgagcctaattggctgaagcgcgagcatgtcaggcgcggactg
gtgccaggtcaggtcagcgagttggtgacggccagcagacgtgaagagcggaggcagatg
aagtgggagagagccaaatccgaacaagaggccatcagacagttacgcatacgagaagca
caactagccgccaatcagaccgcggccgatgatacagtaaaaccgtcaagcccgtctgtc
gagactgaagaatccccagcaaaaacccaatccacccatgttcctgcacgagaagcctcg
acggacacggaacccttgcctgaatcaacatcttctctgtctaaatccgatgttgcggtc
aacgacaccaagacaggtgtacctgaagtgtcccgagacagcgaagtggctgtcttcacc
gagcctgaggcgcttgagctttctcttgaagacgatgcacctaccgtcgacgagccagcc
attgagctgaccaacgggacctcgtcacaagctgtagcttcgactatcaccgccgcccat
ccgtcacttccgctaaagccagaagcacacattcactctggcaagatcgcgaagcccagc
gatttcctacagtcgagagaggaagcatcgggggttgttgtcgattcaaagaccgtcgtc
aagtcagaagatgcactgcccacgcctttatcgttaagcttggcccctgttgggccgacc
gaacttctttctcttcccaactcccacggcttcgtcgcagcaacgaccgagcagattgct
gaagcgtctatgaatggcgactctcaaaaggtcgttgtccagcaccttgagccggcggat
tccgaccccgagagcacgaacgatacatctcaacactctctcaccaacggtcattctgtg
ccggttgtcgccaccatattccccgtggggccgttggaacttctctcgttacccaacacc
aacacgcctcttgtcaacgggacatctattgacgatgccaacgatgttgacagtggctcg
actgcaaacttcccgacggtggtggagaagctctcgacgatccacgagaacgctgccttt
gccgactctgaaaacaaaagccggacagtgacgggacacctgatcaatgatctggtcaac
ggtgtgaacggcgagagggccgcccatctgaatgggttgaatggcgtggccaagtcagca
gttgcctcggcggacatcccatcgacgcccaagtctaccaagcgccgtaagagcgttcgc
ttctcgcccaaggtcgagtcggctacttatgagctgtccgatcctcccagtcccagtctg
gctctgttcaacgtaaccaacggaaagggcatggtgcctgccaacggtactgcgctcggg
cccagtgtccttgaggcagagtccaaggacataaccaagtccgacgacagcaaatctctt
gagacgttgaccgaagtcgaggcggagtcaaccgagactatcgagatcgtgaacaaggag
caccttcaactcacatcggaggaagcatttttcctcgcttttggaatgggcgcccttcgg
gttgtcgaccatgtgaccaaggccccgattcccactgttgagctcttcaacttgttccga
tcgtattcttacttcccctcccgaaaggtggaagagcttcagcccgacgacggtttcttg
gtcaactacgctgtctaccaccacttccgctcgctcggctgggttccccgggcaggcatc
aaattcggcgtggactggatgctctacgccagaggccccgtgttcgaccatgccgagttc
ggcgccatcattctgccgtcctactcggaccaatggtggaaggacagcgaccgccagctg
ccgcgcaagacgtggcactggctccacggcgtcgtgcgtgtgctgtctcacgtccagaag
agtctggtcctggtctacgtcgacgtcccggcgccgccccagttcgacgaggcgatgaag
aagggcccgacggaggttttcaagctatacaagatccgcgaggtgatggttaagcgatgg
tcgagcaaccgcaacagatga
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