Chitinibacter bivalviorum: HQ393_01585
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Entry
HQ393_01585 CDS
T06696
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
chiz
Chitinibacter bivalviorum
Pathway
chiz02020
Two-component system
chiz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
chiz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HQ393_01585
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HQ393_01585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chiz03021
]
HQ393_01585
Transcription machinery [BR:
chiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HQ393_01585
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
HTH_38
Motif
Other DBs
NCBI-ProteinID:
QLG87037
UniProt:
A0A7H9BEQ4
LinkDB
All DBs
Position
347791..349179
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AA seq
462 aa
AA seq
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MKQSLQLRMSQQLNLTPQLQQSIKLLQLSTLEFNQELDQYLADNPLLERDEPEGDAGEVI
ESVTESNDTASEELDGLRWDDVKSGASFDDDDEHDPTLRVPIELSLRDHLLAQARLLGIS
ERDHALLSLLIEALDEDGLLTQSLEEIFEQLPADLIADLELEPEELLTAHQYLMQLEPLG
VGARTLSECLLLQLKVYPESEVLNLAKRLIESSLELLALRDYTKLKKLLHCDEEQLRQAQ
QLIRTLNPRPAANWGGETTRYVVPDVLVQKLRGRWTVKLNQAAQPKLKVNEIYAKLLQGD
AGDSLAGQLQEARWLIKSIEQRGSTILRVAQAIVARQQAFFEYGEVAMKPLVLRDIAEEL
DLHESTISRVTTQKFMLTPRGVLEYKYFFGSHVENESGGENSATSIKALIKQLVQQENPK
KPLSDSAITEELARQGVAVARRTVAKYREALNIAPASQRKSL
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatccctgcagctgcgcatgtcgcagcagctcaatttaacgccccaattacag
cagtcgattaagctgctgcaactctccacgcttgaatttaatcaggaattagatcagtac
ttagccgacaatccattactcgagcgtgacgagcctgagggcgatgcgggcgaagtgatc
gagtctgttaccgagtccaatgataccgcttccgaagaactggatggattgcgctgggac
gatgtaaaaagcggcgcatcatttgatgatgatgacgagcatgaccctacgctgcgagtg
cccatcgagctatcgttgcgcgatcatctgctggcccaggctcgcctgctgggtattagc
gagcgcgaccatgccttgctttcgcttttaatcgaggcacttgatgaagacggtttactg
acccaaagcttggaagaaattttcgagcaactacctgccgatttaattgccgatttggaa
ttggaacccgaggagttactcactgcacatcagtatttaatgcagttagaaccattaggt
gtcggagctcgaacgctttcggaatgcttattgcttcagctcaaggtttaccctgagtca
gaggtgctaaatttagctaaacgcttgattgaatctagtcttgaattgctggcgctacgc
gattacaccaagctcaaaaagttattgcattgtgacgaagagcaattacgtcaggcgcag
caattgatacggacactcaatccacgtcccgccgccaattgggggggcgaaacgacccgt
tatgtcgtgcctgatgtgttagtgcaaaaattacgtggtcgttggactgtgaaattgaat
caggcggcccaacctaaattaaaagtcaatgaaatctacgccaaattgttgcaaggggat
gctggtgatagtttggctgggcaattgcaagaagctaggtggttgattaaaagcatagaa
cagcggggtagtacgattttacgagtggctcaagccattgtcgcgcggcagcaagcattt
tttgaatatggtgaagtggcgatgaagccactcgtgttacgcgacattgctgaagaacta
gatttacatgagtcgacaatttcacgtgtgacaacgcaaaaatttatgctgacaccacgt
ggggttttggagtacaaatacttcttcggcagtcatgttgaaaacgaaagtggtggtgaa
aactcggccacttcgatcaaagctttgatcaaacaactggtgcagcaagaaaatccgaag
aaaccattatcggatagtgctataacagaagaactcgcaaggcaaggtgtcgcagtagcg
cggcgcaccgtggccaagtatcgggaggcgttaaatatagcgcctgccagtcagcgcaaa
agcctgtaa
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